Epigenetic nucleosomes: Alu sequences and cg as nucleosome positioning element

Journal of Biomolecular Structure and Dynamics

Volumn 26, Issue 1, 2008, Pages 9-16

  Salih, F ^a   Salih, B ^a   Kogan, S ^a   Trifonov, E N ^a  

^a UNIVERSITY OF HAIFA   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

CURVED DNA; DINUCLEOTIDE;

ALU SEQUENCE; ARTICLE; CPG ISLAND; DNA PROBE; DNA SEQUENCE; EPIGENETICS; GENETIC STABILITY; METHYLATION; NUCLEOSOME; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ALU ELEMENTS; ANIMALS; BASE SEQUENCE; CHICKENS; DINUCLEOTIDE REPEATS; EPIGENESIS, GENETIC; GLOBINS; MOLECULAR SEQUENCE DATA; NUCLEOSOMES; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 47849088254     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2008.10507219     Document Type: Article

References (32)

1. Batzer, M. A., and Deininger, P. L., 2002. Nature Reviews, 3:370–380.
2. Jurka, J., and Milosavljevic, A., 1991. J Mol Evol, 32:105–21.
3. Englander, E. W., Wolffe, A. P., and Howard, B. H., 1993. J Biol Chem, 268:19565–19573.
4. Englander, E. W., and Howard, B. H., 1995. J Biol Chem, 270:10091–10096.
5. Kato, M., Onishi, Y., Wada-Kiyama, Y., Abe, T., Ikemura, T., Kogan, S., Bolshoy, A., Tri-fonov, E. N., and Kiyama, R., 2003. J Molec Biol, 332:111–125.
6. Cohanim, A. B., Kashi, Y., and Trifonov, E. N., 2005. J Biomol Str Dyn, 22:687–694.
7. Cohanim, A. B., Kashi, Y., and Trifonov, E. N., 2006. J Biomol Str Dyn, 23:559–566.
8. Luger, K., Maeder, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J., 1997. Nature, 389:251–260.
9. Richmond, T. J., and Davey, C. A., 2003. Nature, 423:145–150.
10. Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D., and Klug, A., 1984. Nature, 311:532–537.
11. Hogan, M. E., Rooney, T. F., and Austin, R. H., 1987. Nature, 328:554–557.
12. Olson, W. K., Gorin, A. A., Lu, X.-J., Hock, L. M., and Zhurkin, V. B., 1998. Proc Natl Acad Sci USA, 95:11163–11168.
13. Davey, C., Pennings, S., and Allan, J., 1997. J Mol Biol, 267:276–288.
14. Davey, C. S., Pennings, S., Reilly, C., Meehan, R. R., and Allan, J., 2004. Nucl Acids Res, 32:4322–4331.
15. Pennings, S., Allan, J., and Davey, C. S., 2005. Briefings Funct Genomics Proteomics, 3:351–361.
16. Fernandez, A. G., and Anderson, J. N., 2007. J Molec Biol, 371:649–668.
17. Clay, O., Schaffner, W., and Matsuo, K., 1995. Somatic Cell Mol Genet, 21:91–98.
18. Salih, F., Salih, B., and Trifonov, E. N., 2007. J Biomol Str Dyn, 24:489–493.
19. Mengeritsky, G., and Trifonov, E. N., 1983. Nucl Acids Res, 11:3833–3851.
20. Kogan, S. B., Kato, M., Kiyama, R., and Trifonov, E. N., 2006. J Biomol Str Dyn, 24:43–48.
21. Davey, C., Pennings, S., Meersseman, G., Wess, T. J., and Allan, J., 1995. Proc Natl Acad Sci USA, 92:11210–11214.
22. Kochanek, S., Renz, D., and Doerfler, W., 1993. EMBO Journal, 12:1141–1151.
23. Rubin, C. M., VandeVoort, C. A., Teplitz, R. L., and Schmid, C. W., 1994. Nucl Acids Res, 22:5121–5127.
24. Kiyama, R., and Trifonov, E. N., 2002. FEBS Let, 523:7–11.
25. Batzer, M. A., Deininger, P. L., Hellmann-Blumberg, U., Jurka, J., Labuda, D., Rubin, C. M., Schmid, C. W., Zietkiewicz, E., and Zuckerkandl, E., 1996. J Mol Evol, 42:3–6.
26. Park, E.-S., Huh, J.-W., Kim, T.-H., Kwak, K.-D., Kim, W., and Kim, H.-S., 2005. Genes Genet Syst, 80:415–422.
27. Gorin, A. A., Zhurkin, V. B., and Olson, W. K., 1995. J Mol Biol, 247:34–48.
28. Broyles, S. S., and Pettijohn, D. E., 1986. J Mol Biol, 187:47–60.
29. Crick, F. H. C., 1976. Proc Natl Acad Sci USA, 73:2639–2643.
30. Kogan, S., and Trifonov, E. N., 2005. Gene, 352:57–62.
31. Ioshikhes, I., Bolshoy, A., Derenshteyn, K., Borodovsky, M., and Trifonov, E. N., 1996. J Molec Biol, 262:129–139.
32. Trifonov, E. N., 1980. Nucl Acids Res, 8:4041–4053.