Sequence-directed mapping of nucleosome positions

Journal of Biomolecular Structure and Dynamics

Volumn 24, Issue 5, 2007, Pages 489-493

  Salih, F ^a   Salih, B ^a   Trifonov, E N ^a  

^a UNIVERSITY OF HAIFA   (Israel)

Author keywords

Alternative nucleosome positions; Nucleosome mapping; Nucleosome positioning; Nucleosome sequence patterns; Sequence periodicity

Indexed keywords

ARTICLE; CHROMATIN; DNA PROBE; DNA SEQUENCE; DNA STRUCTURE; NUCLEOSOME; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

EID: 33947514987     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.2007.10507137     Document Type: Article

References (25)

1. Trifonov, E. N., and Sussman, J. L., 1980. Proc Natl Acad Sci USA, 77:3816–3820.
2. Trifonov, E. N., 1980. Nucl Acids Res, 8:4041–4053.
3. Mengeritsky, G., and Trifonov, E. N., 1983. Nucl Acids Res, 11:3833–3851.
4. Satchwell, S. C., Drew, H. R., and Travers, A. A., 1986. J Mol Biol, 191:659–675.
5. Ioshikhes, I., Bolshoy, A., Derenshteyn, K., Borodovsky, M., and Trifonov, E. N., 1996. J Molec Biol, 262:129–139.
6. Kato, M., Onishi, Y., Wada-Kiyama, Y., Abe, T., Ikemura, T., Kogan, S., Bolshoy, A., Trifonov, E. N., and Kiyama, R., 2003. J Molec Biol, 332:111–125.
7. Cohanim, A. B., Kashi, Y., and Trifonov, E. N., 2005. J Biomol Str Dyn, 22:687–694.
8. Kogan, S., Kato, M., Kiyama, R., and Trifonov, E. N., 2006. J Biomol Str Dyn, 24:43–48.
9. Segal, E., Fondufe-Mittendorf, Y., Chen, L., Thastrom, A., Field, Y., Moore, I. K., Wang, J.-P. Z., and Widom, J., 2006. Nature, 442:772–778.
10. Cohanim, A. B., Kashi, Y., and Trifonov, E. N., 2006. J Biomol Str Dyn, 23:559–566.
11. Kiyama, R., and Trifonov, E. N., 2002. FEBS Let, 523:7–11.
12. Trifonov, E. N., Kogan, S., and Cohanim, A. B., 2006. Gene Expression and Chromatin Edited by:Kiyama, R., and Shimizu, M., 43–54. Trivandrum, India:Research Signpost.
13. Trifonov, E. N., and Mengeritsky, G., 1988. Structure and Expression. Volume 3:DNA Bending and Curvature Edited by:Olson, W. K., Sarma, M. H., Sarma, R. H., and Sundar-alingam, M., 159–167. Adenine Press.
14. Richmond, T. J., Finch, J. T., Rushton, B., Rhodes, D., and Klug, A., 1984. Nature, 311:532–537.
15. Trifonov, E. N., and Ulanovsky, L. E., 1988. Unusual DNA Structures Edited by:Wells, R. D., and Harvey, S. C., 173–187. New York:Springer Verlag.
16. Kogan, S., and Trifonov, E. N., 2005. Gene, 352:57–62.
17. Trifonov, E. N., 1985. CRC Crit Rev Biochemistry, 19:89–106.
18. Bolshoy, A., McNamara, P., Harrington, R. E., and Trifonov, E. N., 1991. Proc Natl Acad Sci USA, 88:2312–2316.
19. Luger, K., Mader, A. W., Richmond, R. K., Sargent, D. F., and Richmond, T. J., 1997. Nature, 389:251
20. Boffelli, D., De Santis, P., Palleschi, A., and Savino, M., 1991. Bioph Chem, 39:127
21. Ioshikhes, I. P., Albert, I., Zanton, S. J., and Pugh, B. F., 2006. Nature Genetics, 38:1210–1215.
22. Yuan, G. C., Liu, Y. L., Dion, M. F., Slack, M. D., Wu, L. F., Altschuler, S. J., and Rando, O. J., 2005. Science, 309:626–630.
23. Ponder, B. A. J., and Crawford, L. V., 1977. Cell, 11:35–49.
24. Ambrose, C., Lowman, H., Rajadyaksha, A., Blasquez, V., and Bina, M., 1990. J Mol Biol, 214:875–884.
25. Winter, E., and Varshavsky, A., 1989. EMBO J, 8:1867–1877.