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Volumn 43, Issue 39, 2004, Pages 12549-12554

Accommodation of mispair aligned N3T-ethyl-N3T DNA interstrand cross link

Author keywords

[No Author keywords available]

Indexed keywords

CARBON; CROSSLINKING; MOLECULAR DYNAMICS; NUCLEAR MAGNETIC RESONANCE; SOLUTIONS; SPECTROSCOPY; SUGAR (SUCROSE);

EID: 4744342641     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0486435     Document Type: Article
Times cited : (11)

References (38)
  • 1
    • 0035807079 scopus 로고    scopus 로고
    • Repair of DNA interstrand cross-links
    • Dronkert, M. L., and Kanaar, R. (2001) Repair of DNA interstrand cross-links, Mutat. Res. 486, 217-247.
    • (2001) Mutat. Res. , vol.486 , pp. 217-247
    • Dronkert, M.L.1    Kanaar, R.2
  • 2
    • 0030978416 scopus 로고    scopus 로고
    • Temperature-dependent formation of a conjugate between tris-(hydroxymethyl)aminomethane buffer and the malondialdehyde-DNA adduct pyrimidopurinone
    • Niedernhofer, L. J., Riley, M., SchnetzBoutaud, N., Sanduwaran, G., Chaudhary, A. K., Reddy, G. R., and Marnett, L. J. (1997) Temperature-dependent formation of a conjugate between tris-(hydroxymethyl)aminomethane buffer and the malondialdehyde-DNA adduct pyrimidopurinone, Chem. Res. Toxicol. 10, 556-561.
    • (1997) Chem. Res. Toxicol. , vol.10 , pp. 556-561
    • Niedernhofer, L.J.1    Riley, M.2    SchnetzBoutaud, N.3    Sanduwaran, G.4    Chaudhary, A.K.5    Reddy, G.R.6    Marnett, L.J.7
  • 5
    • 0344741415 scopus 로고    scopus 로고
    • New insights on how nucleotide excision repair could remove DNA adducts induced by chemotherapeutic agents and psoralens plus UV-A (PUVA) in Escherichia coli cells
    • Lage, C., de Padula, M., de Alencar, T. A. M., Goncalves, S. R. D., Vidal, L. D., Cabral-Neto, J., and Leitao, A. C. (2003) New insights on how nucleotide excision repair could remove DNA adducts induced by chemotherapeutic agents and psoralens plus UV-A (PUVA) in Escherichia coli cells, Mutat. Res. 544, 143-157.
    • (2003) Mutat. Res. , vol.544 , pp. 143-157
    • Lage, C.1    De Padula, M.2    De Alencar, T.A.M.3    Goncalves, S.R.D.4    Vidal, L.D.5    Cabral-Neto, J.6    Leitao, A.C.7
  • 6
    • 0035807079 scopus 로고    scopus 로고
    • Repair of DNA interstrand cross-links
    • Dronkert, M. L. G., and Kanaar, R. (2001) Repair of DNA interstrand cross-links, Mutat. Res. 486, 217-247.
    • (2001) Mutat. Res. , vol.486 , pp. 217-247
    • Dronkert, M.L.G.1    Kanaar, R.2
  • 7
    • 0032167953 scopus 로고    scopus 로고
    • Two wavelength femtosecond laser induced DNA-protein cross-linking
    • Russmann, C., Stollhof, J., Weiss, C., Beigang, R., and Beato, M. (1998) Two wavelength femtosecond laser induced DNA-protein cross-linking, Nucleic Acids Res. 26, 3967-3970.
    • (1998) Nucleic Acids Res. , vol.26 , pp. 3967-3970
    • Russmann, C.1    Stollhof, J.2    Weiss, C.3    Beigang, R.4    Beato, M.5
  • 9
    • 0001007178 scopus 로고    scopus 로고
    • UV damage, DNA repair, and skin carcinogenesis
    • Cleaver, J. E., and Crowley, E. (2002) UV damage, DNA repair, and skin carcinogenesis, Front. Biosci. 7, D1024-D1043.
    • (2002) Front. Biosci. , vol.7
    • Cleaver, J.E.1    Crowley, E.2
  • 10
    • 0020034043 scopus 로고
    • Induction and repair of psoralen cross-links in DNA of normal human and xeroderma pigmentosum fibroblasts
    • Bredberg, A., Lambert, B., and Soderhall, S. (1982) Induction and repair of psoralen cross-links in DNA of normal human and xeroderma pigmentosum fibroblasts, Mutat. Res. 93, 221-234.
    • (1982) Mutat. Res. , vol.93 , pp. 221-234
    • Bredberg, A.1    Lambert, B.2    Soderhall, S.3
  • 11
    • 0023659216 scopus 로고
    • Structure of a psoralen cross-linked DNA in solution by nuclear magnetic resonance
    • Tomic, M. T., Wemmer, D. E., and Kim, S. H. (1987) Structure of a psoralen cross-linked DNA in solution by nuclear magnetic resonance, Science 238, 1722-1725.
    • (1987) Science , vol.238 , pp. 1722-1725
    • Tomic, M.T.1    Wemmer, D.E.2    Kim, S.H.3
  • 12
    • 0035917317 scopus 로고    scopus 로고
    • The crystal structures of psoralen cross-linked DNAs: Drug-dependent formation of Holliday junctions
    • Eichman, B. F., Mooers, B. H. M., Alberti, M., Hearst, J. E., and Ho, P. S. (2001) The crystal structures of psoralen cross-linked DNAs: Drug-dependent formation of Holliday junctions, J. Mol. Biol. 308, 15-26.
    • (2001) J. Mol. Biol. , vol.308 , pp. 15-26
    • Eichman, B.F.1    Mooers, B.H.M.2    Alberti, M.3    Hearst, J.E.4    Ho, P.S.5
  • 13
    • 0030030008 scopus 로고    scopus 로고
    • The solution structure of a psoralen cross-linked DNA duplex by NMR and relaxation matrix refinement
    • Hwang, G. S., Kim, J. K., and Choi, B. S. (1996) The solution structure of a psoralen cross-linked DNA duplex by NMR and relaxation matrix refinement, Biochem. Biophys. Res. Commun. 219, 191-197.
    • (1996) Biochem. Biophys. Res. Commun. , vol.219 , pp. 191-197
    • Hwang, G.S.1    Kim, J.K.2    Choi, B.S.3
  • 14
    • 0028801257 scopus 로고
    • Solution sStructures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics
    • Spielmann, H. P., Dwyer, T. J., Hearst, J. E., and Wemmer, D. E. (1995) Solution sStructures of psoralen monoadducted and cross-linked DNA oligomers by NMR spectroscopy and restrained molecular dynamics, Biochemistry 34, 12937-12953.
    • (1995) Biochemistry , vol.34 , pp. 12937-12953
    • Spielmann, H.P.1    Dwyer, T.J.2    Hearst, J.E.3    Wemmer, D.E.4
  • 15
    • 0026735585 scopus 로고
    • Structure of the DNA interstrand cross-link of 4,5′,8- trimethylpsoralen
    • Kumaresan, K. R., Ramaswamy, M., and Yeung, A. T. (1992) Structure of the DNA interstrand cross-link of 4,5′,8-trimethylpsoralen, Biochemistry 31, 6774-6783.
    • (1992) Biochemistry , vol.31 , pp. 6774-6783
    • Kumaresan, K.R.1    Ramaswamy, M.2    Yeung, A.T.3
  • 16
    • 0034821215 scopus 로고    scopus 로고
    • Synthesis and characterization of DNA duplexes containing an N(4)C-ethyl-N(4)C interstrand cross-link
    • Noll, D. M., Noronha, A. M., and Miller, P. S. (2001) Synthesis and characterization of DNA duplexes containing an N(4)C-ethyl-N(4)C interstrand cross-link, J. Am. Chem. Soc. 123, 3405-3411.
    • (2001) J. Am. Chem. Soc. , vol.123 , pp. 3405-3411
    • Noll, D.M.1    Noronha, A.M.2    Miller, P.S.3
  • 18
    • 0037154085 scopus 로고    scopus 로고
    • N(4)C-Ethyl-N(4)C cross-linked DNA: Synthesis and characterization of duplexes with interstrand cross-links of different orientations
    • Noronha, A. M., Noll, D. M., Wilds, C. J., and Miller, P. S. (2002) N(4)C-Ethyl-N(4)C cross-linked DNA: Synthesis and characterization of duplexes with interstrand cross-links of different orientations, Biochemistry 41, 760-771.
    • (2002) Biochemistry , vol.41 , pp. 760-771
    • Noronha, A.M.1    Noll, D.M.2    Wilds, C.J.3    Miller, P.S.4
  • 19
    • 0037046980 scopus 로고    scopus 로고
    • 4C cross-linked DNA: Bending deformations in duplexes that contain a -CNG- interstrand cross-link
    • 4C cross-linked DNA: Bending deformations in duplexes that contain a -CNG- interstrand cross-link, Biochemistry 41, 8605-8612.
    • (2002) Biochemistry , vol.41 , pp. 8605-8612
    • Noronha, A.M.1    Wilds, C.J.2    Miller, P.S.3
  • 20
    • 3342920613 scopus 로고    scopus 로고
    • Mispair-aligned N3T-alkyl-N3T interstrand cross-linked DNA: Synthesis and characterization of duplexes with interstrand cross-links of variable lengths
    • Wilds, C. J., Noronha, A. M., Robidoux, S., and Miller, P. S. (2004) Mispair-aligned N3T-alkyl-N3T interstrand cross-linked DNA: Synthesis and characterization of duplexes with interstrand cross-links of variable lengths, J. Am. Chem. Soc. 126, 9257-9265.
    • (2004) J. Am. Chem. Soc. , vol.126 , pp. 9257-9265
    • Wilds, C.J.1    Noronha, A.M.2    Robidoux, S.3    Miller, P.S.4
  • 21
    • 0347928863 scopus 로고    scopus 로고
    • Solution structure of a DNA duplex containing mispair-aligned N4C-ethyl-N4C interstrand cross-linked cytosines
    • Webba da Silva M. N. A., Noll, D. M., Miller, P. S., Colvin, O. M., and Gamcsik, M. P. (2002) Solution structure of a DNA duplex containing mispair-aligned N4C-ethyl-N4C interstrand cross-linked cytosines, Biochemistry 41, 15181-15188.
    • (2002) Biochemistry , vol.41 , pp. 15181-15188
    • Webba Da Silva, M.N.A.1    Noll, D.M.2    Miller, P.S.3    Colvin, O.M.4    Gamcsik, M.P.5
  • 22
    • 0343359244 scopus 로고
    • Investigation of exchange processes by two-dimensional NMR spectroscopy
    • Jeener, J., Meier, B. H., Bachmann, P., and Ernst, R. R. (1979) Investigation of exchange processes by two-dimensional NMR spectroscopy, J. Chem. Phys. 71, 4546-4554.
    • (1979) J. Chem. Phys. , vol.71 , pp. 4546-4554
    • Jeener, J.1    Meier, B.H.2    Bachmann, P.3    Ernst, R.R.4
  • 23
    • 0005963761 scopus 로고
    • Multiple quantum filters for elucidating NMR coupling networks
    • Piantini, U., Sorensen, O. W., and Ernst, R. R. (1982) Multiple quantum filters for elucidating NMR coupling networks, J. Am. Chem. Soc, 104, 6800-6801.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 6800-6801
    • Piantini, U.1    Sorensen, O.W.2    Ernst, R.R.3
  • 24
    • 0344448273 scopus 로고
    • Coherence transfer by isotropic mixing: Applications to proton correlation spectroscopy
    • Braunsweiler, L., and Ernst, R. R. (1987) Coherence transfer by isotropic mixing: Applications to proton correlation spectroscopy, J. Magn. Reson, 53, 521-528.
    • (1987) J. Magn. Reson. , vol.53 , pp. 521-528
    • Braunsweiler, L.1    Ernst, R.R.2
  • 25
    • 33845555707 scopus 로고
    • Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences
    • Gueron, M., and Plateau, P. (1982) Exchangeable proton NMR without base-line distortion, using new strong-pulse sequences, J. Am. Chem. Soc. 104, 7310-7311.
    • (1982) J. Am. Chem. Soc. , vol.104 , pp. 7310-7311
    • Gueron, M.1    Plateau, P.2
  • 26
    • 0026951903 scopus 로고
    • Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions
    • Piotto, M., Saudek, V., and Sklenar, V. (1992) Gradient-tailored excitation for single-quantum NMR spectroscopy of aqueous solutions, J. Biomol. NMR 2, 661-665.
    • (1992) J. Biomol. NMR , vol.2 , pp. 661-665
    • Piotto, M.1    Saudek, V.2    Sklenar, V.3
  • 28
    • 0024539180 scopus 로고
    • Defining the structure of irregular nucleic acids: Conventions and principles
    • Lavery, R., and Sklenar, H. (1989) Defining the structure of irregular nucleic acids: Conventions and principles, J. Biomol. Struct. Dyn. 6, 655-667.
    • (1989) J. Biomol. Struct. Dyn. , vol.6 , pp. 655-667
    • Lavery, R.1    Sklenar, H.2
  • 31
    • 0023053645 scopus 로고
    • 2 to porcine pancreatic elastase. Combined use of two-dimensional transferred nuclear Overhauser enhancement measurements, restrained molecular dynamics, X-ray crystallography, and molecular modelling
    • 2 to porcine pancreatic elastase. Combined use of two-dimensional transferred nuclear Overhauser enhancement measurements, restrained molecular dynamics, X-ray crystallography, and molecular modelling, J. Mol. Biol. 190, 259-267.
    • (1986) J. Mol. Biol. , vol.190 , pp. 259-267
    • Clore, G.M.1    Gronenborn, A.M.2    Carlson, G.3    Meyer, E.F.4
  • 33
    • 33646940952 scopus 로고
    • Numerical integration of the Cartesion equations of motion of a system with constraints: Molecular dynamics of n-alkanes
    • Ryckaert, J.-P., Ciccotti, G., and Berendsen, H. J. C. (1977) Numerical integration of the Cartesion equations of motion of a system with constraints: Molecular dynamics of n-alkanes, J. Comput. Phys. 23, 327-341.
    • (1977) J. Comput. Phys. , vol.23 , pp. 327-341
    • Ryckaert, J.-P.1    Ciccotti, G.2    Berendsen, H.J.C.3
  • 36
    • 84989004405 scopus 로고
    • Application of two-dimensional NMR-spectroscopy in the determination of solution conformation of nucleic acids
    • Hosur, R. V., Govil, G., and Miles, H. T. (1988) Application of two-dimensional NMR-spectroscopy in the determination of solution conformation of nucleic acids, Magn. Reson. Chem. 26, 927-944.
    • (1988) Magn. Reson. Chem. , vol.26 , pp. 927-944
    • Hosur, R.V.1    Govil, G.2    Miles, H.T.3
  • 37
    • 0032797401 scopus 로고    scopus 로고
    • Nucleic acid targeting: Therapeutic strategies for the 21st century
    • Thurston, D. E. (1999) Nucleic acid targeting: Therapeutic strategies for the 21st century, Br. J. Cancer 80, 65-85.
    • (1999) Br. J. Cancer , vol.80 , pp. 65-85
    • Thurston, D.E.1
  • 38
    • 0035282633 scopus 로고    scopus 로고
    • Design, synthesis, and evaluation of a novel pyrrolobenzodiazepine DNA-interactive agent with highly efficient cross-linking ability and potent cytotoxicity
    • Gregson, S. J., Howard, P. W., Hartley, J. A., Brooks, N. A., Adams, L. J., Jenkins, T. C., Kelland, L. R., and Thurston, D. E. (2001) Design, synthesis, and evaluation of a novel pyrrolobenzodiazepine DNA-interactive agent with highly efficient cross-linking ability and potent cytotoxicity, J. Med. Chem. 44, 737-748.
    • (2001) J. Med. Chem. , vol.44 , pp. 737-748
    • Gregson, S.J.1    Howard, P.W.2    Hartley, J.A.3    Brooks, N.A.4    Adams, L.J.5    Jenkins, T.C.6    Kelland, L.R.7    Thurston, D.E.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.