메뉴 건너뛰기




Volumn 47, Issue 28, 2008, Pages 7335-7341

The Y39A mutation of HK022 Nun disrupts a boxB interaction but preserves termination activity

Author keywords

[No Author keywords available]

Indexed keywords

AMINES; AMINO ACIDS; AROMATIC COMPOUNDS; DISSOCIATION; ESCHERICHIA COLI; FLOW INTERACTIONS; HEALTH; ORGANIC ACIDS; RNA;

EID: 47249096275     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi8004347     Document Type: Article
Times cited : (4)

References (39)
  • 1
    • 0023646732 scopus 로고
    • The remarkable specificity of a new transcription termination factor suggests that the mechanisms of termination and antitermination are similar
    • Robert, J., Sloan, S. B., Weisberg, R. A., Gottesman, M. E., Robledo, R., and Harbrecht, D. (1987) The remarkable specificity of a new transcription termination factor suggests that the mechanisms of termination and antitermination are similar. Cell 51, 483-492.
    • (1987) Cell , vol.51 , pp. 483-492
    • Robert, J.1    Sloan, S.B.2    Weisberg, R.A.3    Gottesman, M.E.4    Robledo, R.5    Harbrecht, D.6
  • 2
    • 0025320479 scopus 로고
    • Lambda nutR mutations convert HK022 Nun protein from a transcription termination factor to a suppressor of termination
    • Robledo, R., Gottesman, M. E., and Weisberg, R. A. (1990) Lambda nutR mutations convert HK022 Nun protein from a transcription termination factor to a suppressor of termination. J. Mol. Biol. 212, 635-643.
    • (1990) J. Mol. Biol , vol.212 , pp. 635-643
    • Robledo, R.1    Gottesman, M.E.2    Weisberg, R.A.3
  • 3
    • 0027321585 scopus 로고
    • Control of transcription termination by RNA-binding proteins
    • Das, A. (1993) Control of transcription termination by RNA-binding proteins. Annu. Rev. Biochem. 62, 893-930.
    • (1993) Annu. Rev. Biochem , vol.62 , pp. 893-930
    • Das, A.1
  • 4
    • 0027296170 scopus 로고
    • Transcriptional antitermination
    • Greenblatt, J., Nodwell, J. R., and Mason, S. W. (1993) Transcriptional antitermination. Nature 364, 401-406.
    • (1993) Nature , vol.364 , pp. 401-406
    • Greenblatt, J.1    Nodwell, J.R.2    Mason, S.W.3
  • 5
    • 0029007110 scopus 로고
    • Bipartite function of a small RNA hairpin in transcription antitermination in bacteriophage lambda
    • Chattopadhyay, S., Garcia-Mena, J., DeVito, J., Wolska, K., and Das, A. (1995) Bipartite function of a small RNA hairpin in transcription antitermination in bacteriophage lambda. Proc. Natl. Acad. Sci. U.S.A. 92, 4061-4065.
    • (1995) Proc. Natl. Acad. Sci. U.S.A , vol.92 , pp. 4061-4065
    • Chattopadhyay, S.1    Garcia-Mena, J.2    DeVito, J.3    Wolska, K.4    Das, A.5
  • 6
    • 0024347587 scopus 로고
    • Structure and function of the nun gene and the immunity region of the lambdoid phage HK022
    • Oberto, J., Weisberg, R. A., and Gottesman, M. E. (1989) Structure and function of the nun gene and the immunity region of the lambdoid phage HK022. J. Mol. Biol. 207, 675-693.
    • (1989) J. Mol. Biol , vol.207 , pp. 675-693
    • Oberto, J.1    Weisberg, R.A.2    Gottesman, M.E.3
  • 7
    • 0022368688 scopus 로고
    • Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages λ, φ21 and P22
    • Franklin, N. C. (1985) Conservation of genome form but not sequence in the transcription antitermination determinants of bacteriophages λ, φ21 and P22. J. Mol. Biol. 181, 75-84.
    • (1985) J. Mol. Biol , vol.181 , pp. 75-84
    • Franklin, N.C.1
  • 8
    • 0024434420 scopus 로고
    • Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif
    • Lazinski, D., Grzadzielska, E., and Das, A. (1989) Sequence-specific recognition of RNA hairpins by bacteriophage antiterminators requires a conserved arginine-rich motif. Cell 59, 207-218.
    • (1989) Cell , vol.59 , pp. 207-218
    • Lazinski, D.1    Grzadzielska, E.2    Das, A.3
  • 10
    • 0034654168 scopus 로고    scopus 로고
    • The carboxyl terminus of phage HK022 Nun includes a novel zinc-binding motif and a tryptophan required for transcription termination
    • Watnick, R. S., Herring, S. C., Palmer, A. G., III, and Gottesman, M. E. (2000) The carboxyl terminus of phage HK022 Nun includes a novel zinc-binding motif and a tryptophan required for transcription termination. Genes Dev. 14, 731-739.
    • (2000) Genes Dev , vol.14 , pp. 731-739
    • Watnick, R.S.1    Herring, S.C.2    Palmer III, A.G.3    Gottesman, M.E.4
  • 11
    • 0031024910 scopus 로고    scopus 로고
    • Complexes of N antitermination protein of phage λ with specific and nonspecific RNA target sites on the nascent transcript
    • Van Gilst, M. R., Rees, W. A., Das, A., and von Hippel, P. H. (1997) Complexes of N antitermination protein of phage λ with specific and nonspecific RNA target sites on the nascent transcript. Biochemistry 36, 1514-1524.
    • (1997) Biochemistry , vol.36 , pp. 1514-1524
    • Van Gilst, M.R.1    Rees, W.A.2    Das, A.3    von Hippel, P.H.4
  • 12
    • 0035943613 scopus 로고    scopus 로고
    • The structure of the coliphage HK022 Nun protein-λ-phage boxB RNA complex. Implications for the mechanism of transcription termination
    • Faber, C., Schärpf, M., Becker, T., Sticht, H., and Rösch, P. (2001) The structure of the coliphage HK022 Nun protein-λ-phage boxB RNA complex. Implications for the mechanism of transcription termination. J. Biol. Chem. 276, 32064-32070.
    • (2001) J. Biol. Chem , vol.276 , pp. 32064-32070
    • Faber, C.1    Schärpf, M.2    Becker, T.3    Sticht, H.4    Rösch, P.5
  • 13
    • 0000641399 scopus 로고    scopus 로고
    • Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex
    • Schärpf, M., Sticht, H., Schweimer, K., Boehm, M., Hoffmann, S., and Rösch, P. (2000) Antitermination in bacteriophage λ. The structure of the N36 peptide-boxB RNA complex. Eur. J. Biochem. 267, 2397-2408.
    • (2000) Eur. J. Biochem , vol.267 , pp. 2397-2408
    • Schärpf, M.1    Sticht, H.2    Schweimer, K.3    Boehm, M.4    Hoffmann, S.5    Rösch, P.6
  • 14
    • 0032540286 scopus 로고    scopus 로고
    • NMR structure of the bacteriophage λ N peptide/boxB RNA complex; Recognition of a GNRA fold by an arginine-rich motif
    • Legault, P., Li, J., Mogridge, J., Kay, L. E., and Greenblatt, J. (1998) NMR structure of the bacteriophage λ N peptide/boxB RNA complex; Recognition of a GNRA fold by an arginine-rich motif. Cell 93, 289-299.
    • (1998) Cell , vol.93 , pp. 289-299
    • Legault, P.1    Li, J.2    Mogridge, J.3    Kay, L.E.4    Greenblatt, J.5
  • 15
    • 0141730393 scopus 로고    scopus 로고
    • Context and conformation dictate function of a transcription antitermination switch
    • Xia, T., Frankel, A., Takahashi, T. T., Ren, J., and Roberts, R. W. (2003) Context and conformation dictate function of a transcription antitermination switch. Nat. Struct. Biol. 10, 812-819.
    • (2003) Nat. Struct. Biol , vol.10 , pp. 812-819
    • Xia, T.1    Frankel, A.2    Takahashi, T.T.3    Ren, J.4    Roberts, R.W.5
  • 16
    • 24944513808 scopus 로고    scopus 로고
    • RNA-protein recognition: Single-residue ultrafast dynamical control of structural specificity and function
    • Xia, T., Wan, C., Roberts, R. W., and Zewail, A. H. (2005) RNA-protein recognition: Single-residue ultrafast dynamical control of structural specificity and function. Proc. Natl. Acad. Sci. U.S.A. 102, 13013-13018.
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 13013-13018
    • Xia, T.1    Wan, C.2    Roberts, R.W.3    Zewail, A.H.4
  • 17
    • 0027288664 scopus 로고
    • Clustered arginine residues of bacteriophage λ N protein are essential to antitermination of transcription, but their locale cannot compensate for boxB loop defects
    • Franklin, N. C. (1993) Clustered arginine residues of bacteriophage λ N protein are essential to antitermination of transcription, but their locale cannot compensate for boxB loop defects. J. Mol. Biol. 231, 343-360.
    • (1993) J. Mol. Biol , vol.231 , pp. 343-360
    • Franklin, N.C.1
  • 18
    • 0030713372 scopus 로고    scopus 로고
    • RNA recognition by a bent α helix regulates transcriptional antitermination in phage λ
    • Su, L., Radek, J. T., Hallenga, K., Hermanto, P., Chan, G., Labeots, L. A., and Weiss, M. A. (1997) RNA recognition by a bent α helix regulates transcriptional antitermination in phage λ. Biochemistry 36, 12722-12732.
    • (1997) Biochemistry , vol.36 , pp. 12722-12732
    • Su, L.1    Radek, J.T.2    Hallenga, K.3    Hermanto, P.4    Chan, G.5    Labeots, L.A.6    Weiss, M.A.7
  • 19
    • 0025830803 scopus 로고
    • Interaction of fluorescently labeled dideoxynucleotides with HIV-1 reverse transcriptase
    • Müller, B., Restle, T., Reinstein, J., and Goody, R. S. (1991) Interaction of fluorescently labeled dideoxynucleotides with HIV-1 reverse transcriptase. Biochemistry 30, 3709-3715.
    • (1991) Biochemistry , vol.30 , pp. 3709-3715
    • Müller, B.1    Restle, T.2    Reinstein, J.3    Goody, R.S.4
  • 21
    • 34249765651 scopus 로고
    • NMRView: A computer program for the visualization and analysis of NMR data
    • Johnson, B. A., and Blevins, R. A. (1994) NMRView: A computer program for the visualization and analysis of NMR data. J. Biomol. NMR 4, 603-614.
    • (1994) J. Biomol. NMR , vol.4 , pp. 603-614
    • Johnson, B.A.1    Blevins, R.A.2
  • 24
    • 0023732144 scopus 로고
    • Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms
    • Nilges, M., Clore, G. M., and Gronenborn, A. M. (1988) Determination of three-dimensional structures of proteins from interproton distance data by dynamical simulated annealing from a random array of atoms. FEBS Lett. 239, 129-136.
    • (1988) FEBS Lett , vol.239 , pp. 129-136
    • Nilges, M.1    Clore, G.M.2    Gronenborn, A.M.3
  • 25
    • 0024559147 scopus 로고
    • Improved strategies for the determination of protein structures from NMR data: The solution structure of acyl carrier protein
    • Holak, T. A., Nilges, M., and Oschkinat, H. (1989) Improved strategies for the determination of protein structures from NMR data: The solution structure of acyl carrier protein. FEBS Lett. 242, 218-224.
    • (1989) FEBS Lett , vol.242 , pp. 218-224
    • Holak, T.A.1    Nilges, M.2    Oschkinat, H.3
  • 26
    • 0030000912 scopus 로고    scopus 로고
    • Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases
    • Kuszewski, J., Gronenborn, A. M., and Clore, G. M. (1996) Improving the quality of NMR and crystallographic protein structures by means of a conformational database potential derived from structure databases. Protein Sci. 5, 1067-1080.
    • (1996) Protein Sci , vol.5 , pp. 1067-1080
    • Kuszewski, J.1    Gronenborn, A.M.2    Clore, G.M.3
  • 27
    • 0030339738 scopus 로고    scopus 로고
    • AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR
    • Laskowski, R. A., Rullmannn, J. A., MacArthur, M. W., Kaptein, R., and Thornton, J. M. (1996) AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR. J. Biomol. NMR 8, 477-486.
    • (1996) J. Biomol. NMR , vol.8 , pp. 477-486
    • Laskowski, R.A.1    Rullmannn, J.A.2    MacArthur, M.W.3    Kaptein, R.4    Thornton, J.M.5
  • 28
    • 0012293235 scopus 로고    scopus 로고
    • DeLano Scientific, Palo Alto, CA
    • DeLano, W. L. (2002) PyMOL, DeLano Scientific, Palo Alto, CA.
    • (2002) PyMOL
    • DeLano, W.L.1
  • 29
    • 0030930852 scopus 로고    scopus 로고
    • Translational repression by a transcriptional elongation factor
    • Wilson, H. R., Kameyama, L., Zhou, J. G., Guarneros, G., and Court, D. L. (1997) Translational repression by a transcriptional elongation factor. Genes Dev. 11, 2204-2213.
    • (1997) Genes Dev , vol.11 , pp. 2204-2213
    • Wilson, H.R.1    Kameyama, L.2    Zhou, J.G.3    Guarneros, G.4    Court, D.L.5
  • 31
    • 33646196011 scopus 로고    scopus 로고
    • Role of E. coli NusA in phage HK022 Nun-mediated transcription termination
    • Kim, H. C., Washburn, R. S., and Gottesman, M. E. (2006) Role of E. coli NusA in phage HK022 Nun-mediated transcription termination. J. Mol. Biol. 359, 10-21.
    • (2006) J. Mol. Biol , vol.359 , pp. 10-21
    • Kim, H.C.1    Washburn, R.S.2    Gottesman, M.E.3
  • 34
    • 2442480826 scopus 로고    scopus 로고
    • Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model
    • Lee, M. C., and Duan, Y. (2004) Distinguish protein decoys by using a scoring function based on a new AMBER force field, short molecular dynamics simulations, and the generalized born solvent model. Proteins 55, 620-634.
    • (2004) Proteins , vol.55 , pp. 620-634
    • Lee, M.C.1    Duan, Y.2
  • 35
    • 10844247921 scopus 로고    scopus 로고
    • A modified TIP3P water potential for simulation with Ewald summation
    • Price, D. J., and Brooks, C. L., III (2004) A modified TIP3P water potential for simulation with Ewald summation. J. Chem. Phys. 121, 10096-10103.
    • (2004) J. Chem. Phys , vol.121 , pp. 10096-10103
    • Price, D.J.1    Brooks III, C.L.2
  • 36
    • 25444481051 scopus 로고    scopus 로고
    • Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity
    • Johnson, N. P., Baase, W. A., and von Hippel, P. H. (2005) Low energy CD of RNA hairpin unveils a loop conformation required for λN antitermination activity. J. Biol. Chem. 280, 32177-32183.
    • (2005) J. Biol. Chem , vol.280 , pp. 32177-32183
    • Johnson, N.P.1    Baase, W.A.2    von Hippel, P.H.3
  • 37
    • 0026348081 scopus 로고
    • RNA structure and NMR spectroscopy
    • Varani, G., and Tinoco, I., Jr. (1991) RNA structure and NMR spectroscopy. Q. Rev. Biophys. 24, 479-532.
    • (1991) Q. Rev. Biophys , vol.24 , pp. 479-532
    • Varani, G.1    Tinoco Jr., I.2
  • 38
    • 0038154079 scopus 로고    scopus 로고
    • The RNA-protein complex: Direct probing of the interfacial recognition dynamics and its correlation with biological functions
    • Xia, T., Becker, H. C., Wan, C., Frankel, A., Roberts, R. W., and Zewail, A. H. (2003) The RNA-protein complex: Direct probing of the interfacial recognition dynamics and its correlation with biological functions. Proc. Natl. Acad. Sci. U.S.A. 100, 8119-8123.
    • (2003) Proc. Natl. Acad. Sci. U.S.A , vol.100 , pp. 8119-8123
    • Xia, T.1    Becker, H.C.2    Wan, C.3    Frankel, A.4    Roberts, R.W.5    Zewail, A.H.6
  • 39
    • 0032716786 scopus 로고    scopus 로고
    • Tryptophan H33 plays an important role in pyrimidine (6-4) pyrimidone photoproduct binding by a high-affinity antibody
    • Kobayashi, H., Kato, J., Morioka, H., Stewart, J. D., and Ohtsuka, E. (1999) Tryptophan H33 plays an important role in pyrimidine (6-4) pyrimidone photoproduct binding by a high-affinity antibody. Protein Eng. 12, 879-884.
    • (1999) Protein Eng , vol.12 , pp. 879-884
    • Kobayashi, H.1    Kato, J.2    Morioka, H.3    Stewart, J.D.4    Ohtsuka, E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.