Tryptophan H33 plays an important role in pyrimidine (6-4) pyrimidone photoproduct binding by a high-affinity antibody

Protein Engineering

Volumn 12, Issue 10, 1999, Pages 879-884

  Kobayashi, Hiroyuki ^a   Kato, Jiro ^a   Morioka, Hiroshi ^a   Stewart, Jon D ^b   Ohtsuka, Eiko ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b University of Florida ^*  (United States)

Author keywords

Antibodies; Fluorescence; Mutagenesis; Pyrimidine (6 4) pyrimidone photoproduct; Surface plasmon resonance

Indexed keywords

ALANINE; ANTIBODY; DNA; PHENYLALANINE; PYRIMIDINE; PYRIMIDINONE DERIVATIVE; TRYPTOPHAN; TYROSINE;

AMINO ACID SUBSTITUTION; ANTIGEN RECOGNITION; ARTICLE; BINDING AFFINITY; CONTROLLED STUDY; FLUORESCENCE; FLUORESCENCE SPECTROSCOPY; PRIORITY JOURNAL; PROTEIN DNA BINDING; SURFACE PLASMON RESONANCE;

EID: 0032716786     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/12.10.879     Document Type: Article

References (27)

1. Franklin, W.A., Lo, K.M. and Haseltine, W.A. (1982) J. Biol. Chem., 257, 13535-13543.
2. Friedberg, E.C., Walker, G.C. and Siede, W. (1995) In DNA Repair and Mutagenesis. ASM Press, Washington, DC.
3. Hauswirth, W., and Wang, S.Y. (1977) Photochem. Photobiol., 25, 161-166.
4. Higuchi, R. (1989) In Erlich, H.A. (ed.), PCR Technology. Stockton Press, New York, pp. 61-70.
5. Ishida, J., Shibata, M., Fujii, K. and Inoue, M. (1983) Biochemistry, 22, 3571-3581.
6. Jones, C.J. and Wood, R.D. (1993) Biochemistry, 32, 12096-12104.
7. Kabat, E.A., Wu, T.T., Perry, H.M., Gottesman, K.S. and Foeller, C. (1992) Sequences of Proteins of Immunological Interest, Release 5.0. National Institutes of Health, Bethesda, MD. The most up-to-date release can be found at http://www.immuno.bme.nwu.edu
8. Kobayashi, H., Morioka, H., Torizawa, J., Kato, K., Shimada, I., Nikaido, O. and Ohtsuka, E. (1998a) J. Biochem., 123, 182-188.
9. Kobayashi, H., Morioka, H., Nikaido, O., Stewart, J.D. and Ohtsuka, E. (1998b) Protein Engng, 11, 1089-1092.
10. Kobayashi, H., Morioka, H., Tobisawa, K., Torizawa, T., Kato, K., Shimada, I., Nikaido, O., Stewart, J.D. and Ohtsuka, E. (1999) Biochemistry, 38, 532-539.
11. Lau, A.Y., Scharer, O.D., Samson, L., Verdine, G.L. and Ellenberger, E. (1998) Cell, 95, 249-258.
12. Li, Y.F. and Sancar, A. (1990) Biochemistry, 29, 5698-5706.
13. Matsunaga, T., Hatakeyama, Y., Ohta, M., Mori, T. and Nikaido, O. (1993) Photochem. Photobiol., 57, 934-940.
14. Mizuno, T., Matsunaga, T., Ihara, M. and Nikaido, O. (1991) Mutat. Res., 254, 175-184.
15. Morellet, N., Demene, H., Teilleux, V., Huynh-Dinh, T., de Rocquigny, H., Fournie-Zaluski, M.C. and Roques, B.P. (1998) J. Mol. Biol., 283, 419-434.
16. Mori, T., Nakane, M., Hattori, T., Matsunaga, M., Ihara, M. and Nikaido, O. (1991) Photochem. Photobiol., 54, 225-232.
17. Morioka, H., Miura, H., Kobayashi, H., Koizumi, T., Fujii, K., Asano, K., Matsunaga, T., Nikaido, O., Stewart, J.D. and Ohtsuka, E. (1998) Biochim. Biophys. Acta, 1385, 17-32.
18. Park, H.-W., Kim, S.-T., Sancar, A. and Deisenhofer, J. (1995) Science, 268, 1866-1872.
19. Roza, L., Van der Wulp, K.J.M., Macfarlane, S.J., Lohman, P.H.M. and Baan, R.A. (1988) Photochem. Photobiol., 48, 627-633.
20. Rumbley, C.A., Denzin, L.K., Yanta, L., Tetin, S.Y. and Voss, E.W., Jr (1993) J. Biol. Chem., 268, 13667-13674.
21. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual, 2nd Edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
22. Sancar, A. (1996) Annu. Rev. Biochem., 65, 43-81.
23. Sattorius, J. and Schneider, H.J. (1995) FEBS Lett., 374, 387-392.
24. Shida, T., Noda, M. and Sekiguchi, J. (1996) Nucleic Acids Res., 24, 4572-4576.
25. Torizawa, T., Kato, K., Kimura, Y., Asada, T., Kobayashi, H., Komatsu, Y., Morioka, H., Nikaido, O., Ohtsuka, E. and Shimada, I. (1998) FEBS Lett., 429, 157-161.
26. Wood, R.D. (1996) Annu. Rev. Biochem., 65, 135-167.
27. Yamagata, Y., Kato, M. and Fujii, S. (1994) Chem. Pharm. Bull., 42, 2385-2387.