RNA-protein recognition: Single-residue ultrafast dynamical control of structural specificity and function

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 37, 2005, Pages 13013-13018

  Xia, Tianbing ^a   Wan, Chaozhi ^a   Roberts, Richard W ^a   Zewail, Ahmed H ^a  

^a CALIFORNIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADENOSINE; ARGININE; MUTANT PROTEIN; PEPTIDE; PROTEIN; RIBOSE; RNA; TRYPTOPHAN;

ALPHA HELIX; AMINO ACID SEQUENCE; ARTICLE; BACTERIOPHAGE LAMBDA; BETA CHAIN; ENTHALPY; FLUORESCENCE; GEOMETRY; HYDROPHOBICITY; MACROMOLECULE; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN RNA BINDING; STRUCTURE ACTIVITY RELATION;

AMINO ACID SEQUENCE; BASE SEQUENCE; BINDING SITES; HYDROPHOBICITY; LASERS; PROTEIN CONFORMATION; RNA; RNA-BINDING PROTEINS; SPECTRUM ANALYSIS; TIME FACTORS; TRANSCRIPTION, GENETIC; VIRAL REGULATORY PROTEINS;

BACTERIOPHAGE LAMBDA;

EID: 24944513808     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0506181102     Document Type: Article

References (36)

1. Nagai, K. & Mattaj, I. W. (1994) RNA-Protein Interactions (Oxford Univ. Press. New York).
2. Das, A. (1993) Annu. Rev. Biochem. 62, 893-930.
3. Uptain, S. M., Kane, C. M. & Chamberlin, M. J. (1997) Annu. Rev. Biochem. 66, 117-172.
4. Greenblatt, J., Nodwell, J. R. & Mason, S. W. (1993) Mittire 364, 401-406.
5. Friedman, D. I. & Court, D. L. (1995) Mol. Microbiol. 18, 191-200.
6. Weisberg, R. A. & Gottesman, M. E. (1999) J. Bacteriol. 181, 359-367.
7. Plashne, M. (2004) A Genetic Switch: Phage Lambda Revisited (Cold Spring Harbor Lab. Press, Woodbury, New York).
8. Mogridge, J., Mah, T. F. & Greenblatt, J. (1995) Gates Dev. 9, 2831-2845.
9. Zhou, Y., Mah, T. F., Yu, Y. T., Mogridge, J., Olson, E. R., Greenblatt, J. & Friedman, D. I. (2001) J. Mol. Biol. 310, 33-49.
10. Cilley, C. D. & Williamson, J. R. (1997) RNA 3, 57-67.
11. Su, L., Radek, J. T., Hallenga, K., Hermanto, P., Chan, G., Labcols, L. A. & Weiss, M. A. (1997) Biochemistry 36, 12722-12732.
12. Austin, R. J., Xia, T., Ren, J., Takahashi, T. T. & Roberts, R. W. (2002) J. Am. Chem. Soc. 124, 10966-10967.
13. Austin, R. J., Xia, T., Reu, J., Takahashi, T. T. & Roberts, R. W. (2003) Biochemistry 42, 14957-14967.
14. Legault, P., Li, J., Mogridge, J., Kay, L. E. & Greenblatt, J. (1998) Cell 93, 289-299.
15. Scharpf, M., Sticht, H., Schweimer, K., Boehm, M., Hoffmann, S. & Rosch, P. (2000) Eur. J. Biochem. 267, 2397-2408.
16. Jucker, F. M., Heus, H. A., Yip, P. F., Moors, E. H. & Pardi, A. (1996) J. Mol. Biol. 264, 968-980.
17. Heus, H. A. & Pardi, A. (1991) Science 253, 191-194.
18. Franklin, N. C. (1993) J. Mol. Biol. 231, 343-360.
19. Barrick, J. E., Takahashi, T. T., Ren, J., Xia, T. & Roberts, R. W. (2001) Proc. Natl. Acad. Sci. USA 98, 12374-12378.
20. Xia, T., Frankel, A., Takahashi, T. T., Ren, J. & Roberts, R. W. (2003) Nat. Struct. Biol 10, 812-819.
21. Xia, T., Becker, H. C., Wan, C., Frankel, A., Roberts, R. W. & Zewail, A. H. (2003) Proc. Natl. Acad. Sci. USA 100, 8119-8123.
22. Milligan, J. F., Groebe, D. R., Witherell, G. W. & Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
23. Fasman, G. D. (1975) Handbook of Biochemistry and Molecular Biology: Nucleic Acids (CRC Press, Cleveland), Vol. 1.
24. Sambrook, J. & Russell, D. W. (2001) Molecular Cloning: A Laboratory Manual (Cold Spring Harbor Lab. Press, Woodbury, NY), Vol. 3.
25. Fiebig, T., Wan, C. & Zewail, A. H. (2002) Chem. Phys. Chem. 3, 781-788.
26. Wan, C., Fiebig, T., Schiemann, O., Barton, J. K. & Zewail, A. H. (2000) Proc. Natl. Acad. Sci. USA 97, 14052-14055.
27. Pal, S. K., Peon, J. & Zewail, A. H. (2002) Proc. Natl. Acad. Sci. USA 99, 1763-1768.
28. Faber, C., Scharpf, M., Becker, T., Sticht, H. & Rosch, P. (2001) J. Biol. Chem. 276, 32064-32070.
29. Peled-Zchavi, H., Smith, C. A., Harada, K. & Frankel, A. D. (2000) Methods Enzymol. 318, 297-308.
30. Garcia-Garcia, C. & Draper, D. E. (2003) J. Mol. Biol. 331, 75-88.
31. Wan, C., Xia, T., Becker, H.-C. & Zewail, A. H. (2005) Chem. Phys. Lett. 412, 158-163.
32. Zwahlen, C., Legault, P., Vincent, S. J. F., Greenblatt, J., Konrat, R. & Kay, L. E. (1997) J. Am. Chem. Soc. 119, 6711-6721.
33. Shoemaker, K. R., Kim, P. S., York, E. J., Stewart, J. M. & Baldwin, R. L. (1987) Nature 326, 563-567.
34. Richardson, J. S. & Richardson, D. C. (1988) Science 240, 1648-1652.
35. O'Neil, K. T. & DeGrado, W. F. (1990) Science 250, 646-651.
36. Tan, R. & Franket, A. D. (1995) Proc. Natl. Acad. Sci. USA 92, 5282-5286.