Expression cloning in Xenopus identifies RNA-binding proteins as regulators of embryogenesis and Rbmx as necessary for neural and muscle development

Developmental Dynamics

Volumn 237, Issue 7, 2008, Pages 1755-1766

  Dichmann, Darwin S ^a   Fletcher, Russell B ^a   Harland, Richard M ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Development; Embryo; Expression cloning screen; hnRNPG; Neural; Rbmx; RNA binding proteins; Xenopus

Indexed keywords

HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN; MORPHOLINE DERIVATIVE; PROTEIN RBMX; REGULATOR PROTEIN; RNA BINDING PROTEIN;

ANIMAL CELL; ARTICLE; EMBRYO; EMBRYO DEVELOPMENT; EMBRYO PATTERN FORMATION; EMBRYO SEGMENTATION; GENE EXPRESSION REGULATION; GENE ISOLATION; GENETIC SCREENING; MOLECULAR CLONING; MUSCLE DEVELOPMENT; NERVE GROWTH; NERVOUS SYSTEM DEVELOPMENT; NEURAL CREST; NEUROECTODERM; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; TADPOLE; UNINDEXED SEQUENCE; XENOPUS LAEVIS;

ANIMALS; CLONING, MOLECULAR; EMBRYO, NONMAMMALIAN; EMBRYONIC DEVELOPMENT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; HETEROGENEOUS-NUCLEAR RIBONUCLEOPROTEINS; IMMUNOHISTOCHEMISTRY; IN SITU HYBRIDIZATION; MUSCLES; MUTATION; NERVOUS SYSTEM; NEURAL CREST; RNA, MESSENGER; RNA-BINDING PROTEINS; XENOPUS LAEVIS; XENOPUS PROTEINS;

XENOPUS LAEVIS;

EID: 46949092929     PISSN: 10588388     EISSN: 10970177     Source Type: Journal    
DOI: 10.1002/dvdy.21590     Document Type: Article

References (48)

1. Berleth T, Burri M, Thoma G, Bopp D, Richstein S, Frigerio G, Noll M, Nusslein-Volhard C. 1988. The role of localization of bicoid RNA in organizing the anterior pattern of the Drosophila embryo. EMBO J 7:1749-1756.
2. Black DL. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72:291-336.
3. Blanchette M, Green RE, Brenner SE, Rio DC. 2005. Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila. Genes Dev 19:1306-1314.
4. Brett D, Pospisil H, Valcarcel J, Reich J, Bork P. 2002. Alternative splicing and genome complexity. Nat Genet 30:29-30.
5. Casarosa S, Andreazzoli M, Simeone A, Barsacchi G. 1997. Xrx1, a novel Xenopus homeobox gene expressed during eye and pineal gland development. Mech Dev 61:187-198.
6. Darken RS, Scola AM, Rakeman AS, Das G, Mlodzik M, Wilson PA. 2002. The planar polarity gene strabismus regulates convergent extension movements in Xenopus. EMBO J 21:976-985.
7. Dietrich S, Schubert FR, Healy C, Sharpe PT, Lumsden A. 1998. Specification of the hypaxial musculature. Development 125:2235-2249.
8. Dreyfuss G, Matunis MJ, Pinol-Roma S, Burd CG. 1993. hnRNP proteins and the biogenesis of mRNA. Annu Rev Biochem 62:289-321.
9. Eizema K, Koster JG, Stegeman BI, Baarends WM, Lanser PH, Destree OH. 1994. Comparative analysis of Engrailed-1 and Wnt-1 expression in the developing central nervous system of Xenopus laevis. Int J Dev Biol 38:623-632.
10. Glinka A, Wu W, Delius H, Monaghan AP, Blumenstock C, Niehrs C. 1998. Dickkopf-1 is a member of a new family of secreted proteins and functions in head induction. Nature 391:357-362.
11. Grammer TC, Liu KJ, Mariani FV, Harland RM. 2000. Use of large-scale expression cloning screens in the Xenopus laevis tadpole to identify gene function. Dev Biol 228:197-210.
12. Gross MK, Dottori M, Goulding M. 2002. Lbx1 specifies somatosensory association interneurons in the dorsal spinal cord. Neuron 34:535-549.
13. Heller N, Brandli AW. 1997. Xenopus Pax-2 displays multiple splice forms during embryogenesis and pronephric kidney development. Mech Dev 69:83-104.
14. Hirsch N, Harris WA. 1997. Xenopus Pax-6 and retinal development. J Neurobiol 32:45-61.
15. Hopwood N, Pluck A, Gurdon J. 1989. MyoD expression in the forming somites is an early response to mesoderm induction in Xenopus embryos. EMBO J 8:3409-3417.
16. Joberty G, Petersen C, Gao L, Macara IG. 2000. The cell-polarity protein Par6 links Par3 and atypical protein kinase C to Cdc42. Nat Cell Biol 2:531-539.
17. Johnson JM, Castle J, Garrett-Engele P, Kan Z, Loerch PM, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD. 2003. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302:2141-2144.
18. Kintner CR, Brockes JP. 1984. Monoclonal antibodies identify blastemal cells derived from dedifferentiating limb regeneration. Nature 308:67-69.
19. Klingensmith J, Nusse R, Perrimon N. 1994. The Drosophila segment polarity gene dishevelled encodes a novel protein required for response to the wingless signal. Genes Dev 8:118-130.
20. Knecht AK, Harland RM. 1997. Mechanisms of dorsal-ventral patterning in noggin-induced neural tissue. Development 124:2477-2488.
21. Liu KJ, Harland RM. 2005. Inhibition of neurogenesis by SRp38, a neuroD-regulated RNA-binding protein. Development 132:1511-1523.
22. Martello G, Zacchigna L, Inui M, Montagner M, Adorno M, Mamidi A, Morsut L, Soligo S, Tran U, Dupont S, Cordenonsi M, Wessely O, Piccolo S. 2007. MicroRNA control of Nodal signalling. Nature 449:183-188.
23. Martin BL, Harland RM. 2006. A novel role for Lbx1 in Xenopus hypaxial myogenesis. Development 133:195-208.
24. Matise MP, Joyner AL. 1997. Expression patterns of developmental control genes in normal and Engrailed-1 mutant mouse spinal cord reveal early diversity in developing interneurons. J Neurosci 17:7805-7816.
25. McKee AE, Minet E, Stern C, Riahi S, Stiles CD, Silver PA. 2005. A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain. BMC Dev Biol 5:14.
26. Melton DA. 1987. Translocation of a localized maternal mRNA to the vegetal pole of Xenopus oocytes. Nature 328:80-82.
27. Modrek B, Lee C. 2002. A genomic view of alternative splicing. Nat Genet 30:13-19.
28. Nieuwkoop PD, Faber J. 1994. Normal table of Xenopus laevis (Daudin): a systematical and chronological survey of the development from the fertilized egg till the end of metamorphosis. New York: Garland Publishing. 252 p. 210 leaves of plates.
29. Nornes HO, Dressier GR, Knapik EW, Deutsch U, Gruss P. 1990. Spatially and temporally restricted expression of Pax2 during murine neurogenesis. Development 109:797-809.
30. Ornitz DM, Xu J, Colvin JS, McEwen DG, MacArthur CA, Coulier F, Gao G, Goldfarb M. 1996. Receptor specificity of the fibroblast growth factor family. J Biol Chem 271:15292-15297.
31. Orr-Urtreger A, Bedford MT, Burakova T, Arman E, Zimmer Y, Yayon A, Givol D, Lonai P. 1993. Developmental localization of the splicing alternatives of fibroblast growth factor receptor-2 (FGFR2). Dev Biol 158:475-486.
32. Reed R, Cheng H. 2005. TREX, SR proteins and export of mRNA. Curr Opin Cell Biol 17:269-273.
33. Richter K, Grunz H, Dawid I. 1988. Gene expression in the embryonic nervous system of Xenopus laevis. Proc Natl Acad Sci U S A 85:8086-8090.
34. Richter K, Good P, Dawid I. 1990. A developmentally regulated, nervous system-specific gene in Xenopus encodes a putative RNA-binding protein. New Biol 2:556-565.
35. Sive HL, Grainger RM, Harland RM. 2000. Early development of Xenopus laevis. A laboratory manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
36. Smith WC, Harland RM. 1992. Expression cloning of noggin, a new dorsalizing factor localized to the Spemann organizer in Xenopus embryos. Cell 70:829-840.
37. Smith JC, Price BM, Green JB, Weigel D, Herrmann BG. 1991. Expression of a Xenopus homolog of Brachyury (T) is an immediate-early response to mesoderm induction. Cell 67:79-87.
38. Smith WC, McKendry R, Ribisi S Jr, Harland RM. 1995. A nodal-related gene defines a physical and functional domain within the Spemann organizer. Cell 82:37-46.
39. Taira M, Otani H, Jamrich M, Dawid IB. 1994. Expression of the LIM class homeobox gene Xlim-1 in pronephros and CNS cell lineages of Xenopus embryos is affected by retinoic acid and exogastrulation. Development 120:1525-1536.
40. Takemoto T, Nishio Y, Sekine O, Ikeuchi C, Nagai Y, Maeno Y, Maegawa H, Kimura H, Kashiwagi A. 2007. RBMX is a novel hepatic transcriptional regulator of SREBP-1c gene response to high-fructose diet. FEBS Lett 581:218-222.
41. Tsend-Ayush E, O'Sullivan LA, Grutzner FS, Onnebo SM, Lewis RS, Delbridge ML, Marshall Graves JA, Ward AC. 2005. RBMX gene is essential for brain development in zebrafish. Dev Dyn 234:682-688.
42. Turner DL, Weintraub H. 1994. Expression of achaete-scute homolog 3 in Xenopus embryos converts ectodermal cells to a neural fate. Genes Dev 8:1434-1447.
43. Ule J, Ule A, Spencer J, Williams A, Hu JS, Cline M, Wang H, Clark T, Fraser C, Ruggiu M, Zeeberg BR, Kane D, Weinstein JN, Blume J, Darnell RB. 2005. Nova regulates brain-specific splicing to shape the synapse. Nat Genet 37:844-852.
44. Venables JP, Elliott DJ, Makarova OV, Makarov EM, Cooke HJ, Eperon IC. 2000. RBMY, a probable human spermatogenesis factor, and other hnRNP G proteins interact with Tra2beta and affect splicing. Hum Mol Genet 9:685-694.
45. Vignali R, Colombetti S, Lupo G, Zhang W, Stachel S, Harland RM, Barsacchi G. 2000. Xotx5b, a new member of the Otx gene family, may be involved in anterior and eye development in Xenopus laevis. Mech Dev 96:3-13.
46. Wang J, Tse SW, Andreadis A. 2007. Tau exon 6 is regulated by an intricate interplay of trans factors and cis elements, including multiple branch points. J Neurochem 100:437-445.
47. Zhao H, Cao Y, Grunz H. 2001. Isolation and characterization of a Xenopus gene (XMLP) encoding a MARCKS-like protein. Int J Dev Biol 45:817-826.
48. Zucchi I, Jones J, Affer M, Montagna C, Redolfi E, Susani L, Vezzoni P, Parvari R, Schlessinger D, Whyte MP, Mumm S. 1999. Transcription map of Xq27: candidates for several X-linked diseases. Genomics 57:209-218.