-
1
-
-
17144402623
-
Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids
-
Baxter CJ, Carrari F, Bauke A, Overy S, Hill SA, Quick PW, Fernie AR, Sweetlove LJ. 2005. Fruit carbohydrate metabolism in an introgression line of tomato with increased fruit soluble solids. Plant Cell Physiology 46, 425-437.
-
(2005)
Plant Cell Physiology
, vol.46
, pp. 425-437
-
-
Baxter, C.J.1
Carrari, F.2
Bauke, A.3
Overy, S.4
Hill, S.A.5
Quick, P.W.6
Fernie, A.R.7
Sweetlove, L.J.8
-
2
-
-
33845665396
-
Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behaviour
-
Carrari F, Baxter C, Usadel B, et al. 2006. Integrated analysis of metabolite and transcript levels reveals the metabolic shifts that underlie tomato fruit development and highlight regulatory aspects of metabolic network behaviour. Plant Physiology 142, 1380-1396.
-
(2006)
Plant Physiology
, vol.142
, pp. 1380-1396
-
-
Carrari, F.1
Baxter, C.2
Usadel, B.3
-
3
-
-
4043149347
-
A genetic map of candidate genes and QTLs involved in tomato fruit size and composition
-
Causse M, Duffe P, Gomez MC, Buret M, Damidaux R, Zamir D, Gur A, Chevalier C, Lemaire-Chamley M, Rothan C. 2004. A genetic map of candidate genes and QTLs involved in tomato fruit size and composition. Journal of Experimental Botany 55, 1671-1685.
-
(2004)
Journal of Experimental Botany
, vol.55
, pp. 1671-1685
-
-
Causse, M.1
Duffe, P.2
Gomez, M.C.3
Buret, M.4
Damidaux, R.5
Zamir, D.6
Gur, A.7
Chevalier, C.8
Lemaire-Chamley, M.9
Rothan, C.10
-
4
-
-
35548995044
-
Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes
-
Chen KY, Cong B, Wing R, Vrebalov J, Tanksley SD. 2007. Changes in regulation of a transcription factor lead to autogamy in cultivated tomatoes. Science 318, 643-645.
-
(2007)
Science
, vol.318
, pp. 643-645
-
-
Chen, K.Y.1
Cong, B.2
Wing, R.3
Vrebalov, J.4
Tanksley, S.D.5
-
5
-
-
0024297354
-
Multiple sequence alignment with hierarchical clustering
-
Corpet T. 1988. Multiple sequence alignment with hierarchical clustering. Nucleic Acids Research 16, 10881-10890.
-
(1988)
Nucleic Acids Research
, vol.16
, pp. 10881-10890
-
-
Corpet, T.1
-
6
-
-
0028846653
-
An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL
-
Eshed Y, Zamir D. 1995. An introgression line population of Lycopersicon pennellii in the cultivated tomato enables the identification and fine mapping of yield-associated QTL. Genetics 141, 1147-1162.
-
(1995)
Genetics
, vol.141
, pp. 1147-1162
-
-
Eshed, Y.1
Zamir, D.2
-
8
-
-
0034617236
-
fw2.2: A quantitative trait locus key to the evolution of tomato fruit size
-
Frary A, Nesbitt TC, Grandillo S, Knaap E, Cong B, Liu J, Meller J, Elber R, Alpert KB, Tanksley SD. 2000. fw2.2: a quantitative trait locus key to the evolution of tomato fruit size. Science 289, 85-88.
-
(2000)
Science
, vol.289
, pp. 85-88
-
-
Frary, A.1
Nesbitt, T.C.2
Grandillo, S.3
Knaap, E.4
Cong, B.5
Liu, J.6
Meller, J.7
Elber, R.8
Alpert, K.B.9
Tanksley, S.D.10
-
9
-
-
4544345787
-
Zooming in on a quantitative trait for tomato yield using interspecific introgressions
-
Fridman E, Carrari F, Liu YS, Fernie A, Zamir D. 2004. Zooming in on a quantitative trait for tomato yield using interspecific introgressions. Science 305, 1786-1789.
-
(2004)
Science
, vol.305
, pp. 1786-1789
-
-
Fridman, E.1
Carrari, F.2
Liu, Y.S.3
Fernie, A.4
Zamir, D.5
-
10
-
-
33747472599
-
A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus
-
Galpaz N, Ronen G, Khalfa Z, Zamir D, Hirschberg J. 2006. A chromoplast-specific carotenoid biosynthesis pathway is revealed by cloning of the tomato white-flower locus. The Plant Cell 18, 1947-1960.
-
(2006)
The Plant Cell
, vol.18
, pp. 1947-1960
-
-
Galpaz, N.1
Ronen, G.2
Khalfa, Z.3
Zamir, D.4
Hirschberg, J.5
-
11
-
-
0031696955
-
Sequencing of cDNA clones from the genetic map of tomato (Lycopersicon esculentum)
-
Ganal MW, Czihal R, Hannappel U, Kloos DU, Polley A, Ling HQ. 1998. Sequencing of cDNA clones from the genetic map of tomato (Lycopersicon esculentum). Genome Research 8, 842-847.
-
(1998)
Genome Research
, vol.8
, pp. 842-847
-
-
Ganal, M.W.1
Czihal, R.2
Hannappel, U.3
Kloos, D.U.4
Polley, A.5
Ling, H.Q.6
-
12
-
-
0031955116
-
Consed: A graphical tool for sequence finishing
-
Gordon D, Abajian C, Green P. 1998. Consed: a graphical tool for sequence finishing. Genome Research 8, 195-202.
-
(1998)
Genome Research
, vol.8
, pp. 195-202
-
-
Gordon, D.1
Abajian, C.2
Green, P.3
-
13
-
-
33644914683
-
Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways
-
Hackel A, Schauer N, Carrari F, Fernie AR, Grimm B, Kühn C. 2006. Sucrose transporter LeSUT1 and LeSUT2 inhibition affects tomato fruit development in different ways. The Plant Journal 45, 180-192.
-
(2006)
The Plant Journal
, vol.45
, pp. 180-192
-
-
Hackel, A.1
Schauer, N.2
Carrari, F.3
Fernie, A.R.4
Grimm, B.5
Kühn, C.6
-
14
-
-
34547175751
-
-
Han S, Seo YS, Kim D, Sung S-K, Kim WT. 2007. Expression of MdCAS1 and MdCAS2, encoding apple β-cyanoalanine synthase homologs, is concomitantly induced during ripening and implicates MdCASs in the possible role of the cyanide detoxification in Fuji apple (Malus domestica Borkh.) fruits. Plant Cell Reports 26, 1321-1331.
-
Han S, Seo YS, Kim D, Sung S-K, Kim WT. 2007. Expression of MdCAS1 and MdCAS2, encoding apple β-cyanoalanine synthase homologs, is concomitantly induced during ripening and implicates MdCASs in the possible role of the cyanide detoxification in Fuji apple (Malus domestica Borkh.) fruits. Plant Cell Reports 26, 1321-1331.
-
-
-
-
16
-
-
38549126643
-
KEGG for linking genomes to life and the environment
-
Kanehisa M, Araki M, Goto S, et al. 2008. KEGG for linking genomes to life and the environment. Nucleic Acids Research 36, 480-484.
-
(2008)
Nucleic Acids Research
, vol.36
, pp. 480-484
-
-
Kanehisa, M.1
Araki, M.2
Goto, S.3
-
17
-
-
33745184059
-
Regulatory role of cystathioninec- γ-synthase and de novo synthesis of methionine in the ethylene production during tomato fruit ripening
-
Katz YS, Galili G, Amir R. 2006. Regulatory role of cystathioninec- γ-synthase and de novo synthesis of methionine in the ethylene production during tomato fruit ripening. Plant Molecular Biology 61, 255-268.
-
(2006)
Plant Molecular Biology
, vol.61
, pp. 255-268
-
-
Katz, Y.S.1
Galili, G.2
Amir, R.3
-
18
-
-
34548050673
-
Differences in regulation of carbohydrate metabolism during early fruit development between domesticated tomato and two wild relatives
-
Kortstee AJ, Appeldoorn NJ, Oortwijn ME, Visser RG. 2007. Differences in regulation of carbohydrate metabolism during early fruit development between domesticated tomato and two wild relatives. Planta 226, 929-939.
-
(2007)
Planta
, vol.226
, pp. 929-939
-
-
Kortstee, A.J.1
Appeldoorn, N.J.2
Oortwijn, M.E.3
Visser, R.G.4
-
19
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S, Tamura K, Jakobsen IB, Nei M. 2001. MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245.
-
(2001)
Bioinformatics
, vol.17
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
20
-
-
36549080467
-
An integrated view of quantitative trait variation using tomato interspecific introgression lines
-
Lippman ZB, Semel Y, Zamir D. 2007. An integrated view of quantitative trait variation using tomato interspecific introgression lines. Current Opinion in Genetics & Development 17, 1-8.
-
(2007)
Current Opinion in Genetics & Development
, vol.17
, pp. 1-8
-
-
Lippman, Z.B.1
Semel, Y.2
Zamir, D.3
-
21
-
-
33947425559
-
The cauliflower Or gene encodes a Dnaj cysteine-rich domain-containing protein that mediates high levels of β-carotene accumulation
-
Lu S, Van Eck J, Zhou X, et al. 2006. The cauliflower Or gene encodes a Dnaj cysteine-rich domain-containing protein that mediates high levels of β-carotene accumulation. The Plant Cell 18, 3594-3605.
-
(2006)
The Plant Cell
, vol.18
, pp. 3594-3605
-
-
Lu, S.1
Van Eck, J.2
Zhou, X.3
-
22
-
-
38849134327
-
The SGN comparative map viewer
-
Mueller L, Mills A, Skwarecki B, Buels R, Menda N, Tanksley S. 2008. The SGN comparative map viewer. Bioinformatics 24, 422-423.
-
(2008)
Bioinformatics
, vol.24
, pp. 422-423
-
-
Mueller, L.1
Mills, A.2
Skwarecki, B.3
Buels, R.4
Menda, N.5
Tanksley, S.6
-
23
-
-
27244454556
-
The SOL genomics network: A comparative resource for Solanaceae biology and beyond
-
Mueller LA, Solow TH, Taylor N, et al. 2005a. The SOL genomics network: a comparative resource for Solanaceae biology and beyond. Plant Physiology 138, 1310-1317.
-
(2005)
Plant Physiology
, vol.138
, pp. 1310-1317
-
-
Mueller, L.A.1
Solow, T.H.2
Taylor, N.3
-
24
-
-
21044436749
-
The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL)
-
Mueller LA, Tanksley SD, Giovannoni JJ, et al. 2005b. The Tomato Sequencing Project, the first cornerstone of the International Solanaceae Project (SOL). Comparative and Functional Genomics 6, 153-158.
-
(2005)
Comparative and Functional Genomics
, vol.6
, pp. 153-158
-
-
Mueller, L.A.1
Tanksley, S.D.2
Giovannoni, J.J.3
-
25
-
-
0022507362
-
Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions
-
Nei M, Gojobori T. 1986. Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Molecular Biology and Evolution 5, 418-426.
-
(1986)
Molecular Biology and Evolution
, vol.5
, pp. 418-426
-
-
Nei, M.1
Gojobori, T.2
-
26
-
-
19044378856
-
Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants
-
Nunes-Nesi A, Carrari F, Lytovchenko A, Smith AMO, Loureiro ME, Ratcliffe RG, Sweetlove LJ, Fernie AR. 2005. Enhanced photosynthetic performance and growth as a consequence of decreasing mitochondrial malate dehydrogenase activity in transgenic tomato plants. Plant Physiology 137, 611-622.
-
(2005)
Plant Physiology
, vol.137
, pp. 611-622
-
-
Nunes-Nesi, A.1
Carrari, F.2
Lytovchenko, A.3
Smith, A.M.O.4
Loureiro, M.E.5
Ratcliffe, R.G.6
Sweetlove, L.J.7
Fernie, A.R.8
-
27
-
-
37549042772
-
Genetic and molecular regulation of fruit and plant domestication traits in tomato and pepper
-
Paran I, Van der Knaap E. 2007. Genetic and molecular regulation of fruit and plant domestication traits in tomato and pepper. Journal of Experimental Botany 58, 3841-3852.
-
(2007)
Journal of Experimental Botany
, vol.58
, pp. 3841-3852
-
-
Paran, I.1
Van der Knaap, E.2
-
28
-
-
33646382386
-
Believe it or not, QTLs are accurate!
-
Price A. 2006. Believe it or not, QTLs are accurate! Trends in Plant Science 11, 213-216.
-
(2006)
Trends in Plant Science
, vol.11
, pp. 213-216
-
-
Price, A.1
-
29
-
-
33751265748
-
The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones
-
Qiu XB, Shao YM, Miao S, Wang L. 2006. The diversity of the DnaJ/Hsp40 family, the crucial partners for Hsp70 chaperones. Cell and Molecular Life Science 63, 2560-2570.
-
(2006)
Cell and Molecular Life Science
, vol.63
, pp. 2560-2570
-
-
Qiu, X.B.1
Shao, Y.M.2
Miao, S.3
Wang, L.4
-
30
-
-
0347513220
-
DnaSP, DNA polymorphism analyses by the coalescent and other methods
-
Rozas J, Sánchez-DelBarrio JC, Messeguer X, Rozas R. 2003. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496-2497.
-
(2003)
Bioinformatics
, vol.19
, pp. 2496-2497
-
-
Rozas, J.1
Sánchez-DelBarrio, J.C.2
Messeguer, X.3
Rozas, R.4
-
31
-
-
20444391743
-
To clone or not to clone plant QTLs: Present and future challenges
-
Salvi S, Tuberosa R. 2005. To clone or not to clone plant QTLs: present and future challenges. Trends in Plant Science 10, 297-304.
-
(2005)
Trends in Plant Science
, vol.10
, pp. 297-304
-
-
Salvi, S.1
Tuberosa, R.2
-
32
-
-
33947307759
-
Plant metabolomics: Towards biological functions and mechanism
-
Schauer N, Fernie A. 2006. Plant metabolomics: towards biological functions and mechanism. Trends in Plant Science 11, 508-516.
-
(2006)
Trends in Plant Science
, vol.11
, pp. 508-516
-
-
Schauer, N.1
Fernie, A.2
-
33
-
-
33645746673
-
Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement
-
Schauer N, Semel Y, Roessner U, et al. 2006. Comprehensive metabolic profiling and phenotyping of interspecific introgression lines for tomato improvement. Nature Biotechnology 24, 447-454.
-
(2006)
Nature Biotechnology
, vol.24
, pp. 447-454
-
-
Schauer, N.1
Semel, Y.2
Roessner, U.3
-
34
-
-
33645527570
-
Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase
-
Sterling JD, Atmodjo MA, Inwood SE, Kumar Kolli VS, Quigley HF, Hahn MG, Mohnen D. 2006. Functional identification of an Arabidopsis pectin biosynthetic homogalacturonan galacturonosyltransferase. Proceedings of National Academy of Science, USA 103, 5639-5640.
-
(2006)
Proceedings of National Academy of Science, USA
, vol.103
, pp. 5639-5640
-
-
Sterling, J.D.1
Atmodjo, M.A.2
Inwood, S.E.3
Kumar Kolli, V.S.4
Quigley, H.F.5
Hahn, M.G.6
Mohnen, D.7
-
35
-
-
34249812680
-
Candidate genes and QTLs affecting fruit ascorbic acid content in three tomato populations
-
Stevens R, Buret M, Duffé P, Garchery C, Baldet P, Rothan C, Causse M. 2007. Candidate genes and QTLs affecting fruit ascorbic acid content in three tomato populations. Plant Physiology 143, 1943-1953.
-
(2007)
Plant Physiology
, vol.143
, pp. 1943-1953
-
-
Stevens, R.1
Buret, M.2
Duffé, P.3
Garchery, C.4
Baldet, P.5
Rothan, C.6
Causse, M.7
-
36
-
-
0036255811
-
Candidate-gene approaches for studying complex genetic traits: Practical considerations
-
Tabor HK, Risch NJ, Myers RM. 2002. Candidate-gene approaches for studying complex genetic traits: practical considerations. Nature Reviews Genetics 3, 1-7.
-
(2002)
Nature Reviews Genetics
, vol.3
, pp. 1-7
-
-
Tabor, H.K.1
Risch, N.J.2
Myers, R.M.3
-
37
-
-
0032964297
-
BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences
-
Tatusova TA, Madden TL. 1999. BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences. FEMS Microbiology Letters 174, 247-250.
-
(1999)
FEMS Microbiology Letters
, vol.174
, pp. 247-250
-
-
Tatusova, T.A.1
Madden, T.L.2
-
38
-
-
0242607632
-
Parallel analysis of transcript and metabolic profiles: A new approach in systems biology
-
Urbanczyk-Wochniak E, Luedemann A, Kopka J, Selbig J, Roessner-Tunali U, Willmitzer L, Fernie AR. 2003. Parallel analysis of transcript and metabolic profiles: a new approach in systems biology. EMBO Reports 4, 989-93.
-
(2003)
EMBO Reports
, vol.4
, pp. 989-993
-
-
Urbanczyk-Wochniak, E.1
Luedemann, A.2
Kopka, J.3
Selbig, J.4
Roessner-Tunali, U.5
Willmitzer, L.6
Fernie, A.R.7
-
39
-
-
0035984046
-
Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing
-
Van der Hoeven R, Ronning C, Giovannoni J, Martin G, Tanksley S. 2002. Deductions about the number, organization, and evolution of genes in the tomato genome based on analysis of a large expressed sequence tag collection and selective genomic sequencing. The Plant Cell 14, 1441-1456.
-
(2002)
The Plant Cell
, vol.14
, pp. 1441-1456
-
-
Van der Hoeven, R.1
Ronning, C.2
Giovannoni, J.3
Martin, G.4
Tanksley, S.5
-
40
-
-
26944456370
-
The Arabidopsis plastidic methionine sulfoxide reductase B proteins: Sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress
-
Vieira Dos Santos C, Cuiné S, Rouhier N, Rey P. 2005. The Arabidopsis plastidic methionine sulfoxide reductase B proteins: sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress. Plant Physiology 138, 909-922.
-
(2005)
Plant Physiology
, vol.138
, pp. 909-922
-
-
Vieira Dos Santos, C.1
Cuiné, S.2
Rouhier, N.3
Rey, P.4
-
41
-
-
27144503824
-
Cloning and mapping of genes involved in tomato ascorbic acid biosynthesis and metabolism
-
Zou L, Li H, Ouyang B, Zhang J, Ye Z. 2006. Cloning and mapping of genes involved in tomato ascorbic acid biosynthesis and metabolism. Plant Science 170, 120-127.
-
(2006)
Plant Science
, vol.170
, pp. 120-127
-
-
Zou, L.1
Li, H.2
Ouyang, B.3
Zhang, J.4
Ye, Z.5
|