Hairpin-mediated down-regulation of the urea cycle enzyme argininosuccinate lyase in Agaricus bisporus

Mycological Research

Volumn 112, Issue 6, 2008, Pages 708-716

  Eastwood, Daniel C ^a   Challen, Michael P ^a   Zhang, Cunjin ^a   Jenkins, Huw ^b   Henderson, Janey ^b,c   Burton, Kerry S ^a  

^a UNIVERSITY OF WARWICK   (United Kingdom)

^b Institute for Clean Growth and Future Mobility   (United Kingdom)

^c TEESSIDE UNIVERSITY   (United Kingdom)

Author keywords

Agaricus bisporus; Agrobacterium mediated transformation; Argininosuccinate lyase; Hairpin; Post harvest; RNA interference (RNAi); Urea cycle

Indexed keywords

ARGININOSUCCINATE LYASE; DOUBLE STRANDED RNA; FUNGAL PROTEIN; SMALL INTERFERING RNA; UREA;

BACTERIUM; ENZYME ACTIVITY; GENE EXPRESSION; MUSHROOM; UREA;

AGARICUS; ARTICLE; BASE PAIRING; CHEMISTRY; DOWN REGULATION; ENZYMOLOGY; GENE DOSAGE; GENE EXPRESSION REGULATION; GENE VECTOR; GENETIC TRANSFORMATION; GENETICS; METABOLISM; PHENOTYPE; RNA INTERFERENCE;

AGARICUS; ARGININOSUCCINATE LYASE; BASE PAIRING; DOWN-REGULATION; FUNGAL PROTEINS; GENE DOSAGE; GENE EXPRESSION REGULATION, FUNGAL; GENETIC VECTORS; PHENOTYPE; RNA INTERFERENCE; RNA, DOUBLE-STRANDED; RNA, SMALL INTERFERING; TRANSFORMATION, GENETIC; UREA;

AGARICUS BISPORUS; AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; BASIDIOMYCOTA; RHIZOBIUM;

EID: 46549086575     PISSN: 09537562     EISSN: 14698102     Source Type: Journal    
DOI: 10.1016/j.mycres.2008.01.009     Document Type: Article

References (44)

1. Beecher T.M., Magan N., and Burton K.S. Water potentials and soluble carbohydrate concentrations in tissues of freshly harvested and stored mushrooms (Agaricus bisporus). Post harvest Biology and Technology 22 (2001) 121-131
2. Braaksma A., van Doorn A.A., Kieft H., and van Aelst A.C. Morphogenic analysis of ageing mushrooms (Agaricus bisporus) during post-harvest development. Post harvest Biology and Technology 13 (1998) 71-79
3. Burns C., Gregory K.E., Kirby M., Cheung M.K., Riquelme M., Elliot T.J., Challen M.P., Bailey A., and Foster G.D. Efficient GFP expression in the mushrooms Agaricus bisporus and Coprinus cinereus requires introns. Fungal Genetics and Biology 42 (2005) 191-199
4. Burton K.S. Cultural factors affecting mushroom quality - cause and control of bruising. Mushroom Science 16 (2004) 397-402
5. Burton K.S., Partis M.D., Wood D.A., and Thurston C.F. Accumulation of serine proteinase in senescent sporophores of the cultivated mushroom, Agaricus bisporus. Mycological Research 101 (1997) 146-152
6. Chen X., Stone M., Schlagnhaufer C., and Romaine C.P. A fruiting body tissue method for efficient Agrobacterium-mediated transformation of Agaricus bisporus. Applied Environmental Microbiology 66 (2000) 4510-4513
7. De Windt F.E., Wagemaker M.J.M., Op den Camp H.J.M., and van der Drift C. Purine degradation in the edible mushroom Agaricus bisporus. Folia Microbiologica 47 (2002) 672-676
8. Donker H.C.W., and van As H. Cell water balance of white button mushrooms (Agaricus bisporus) during its post-harvest lifetime studied by quantitative magnetic resonance imaging. Biochimica et Biophysica Acta 1427 (1999) 287-297
9. Eastwood D.C., Kingsnorth C.S., Jones H.E., and Burton K.S. Genes with increased transcript levels following harvest of the sporophore of Agaricus bisporus have multiple physiological roles. Mycological Research 105 (2001) 1223-1230
10. Elliott T.J. The genetics and breeding of species of Agaricus. In: Flegg P.B., Spencer D.M., and Wood D.A. (Eds). The Biology and Technology of the Cultivated Mushroom (1985), John Wiley & Sons, Chichester 111-129
11. Elliott T.J. Spawn-making and spawns. In: Flegg P.B., Spencer D.M., and Wood D.A. (Eds). The Biology and Technology of the Cultivated Mushroom (1985), John Wiley & Sons, Chichester 131-139
12. Ewaze J.O., Moore D., and Stewart G.R. Co-ordinate regulation of enzymes involved in ornithine metabolism and its relation to sporophore morphogenesis in Coprinus cinereus. Journal of General Microbiology 107 (1979) 343-357
13. Fire A., Xu S., Montgomery M.K., Kostas S.A., Driver S.E., and Mello C.C. Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans. Nature 391 (1998) 806-811
14. Forrest E.C., Cogoni C., and Macino G. The RNA-dependant RNA polymerase, QDE-1, is a rate-limiting factor in post-transcriptional gene silencing in Neurospora crassa. Nucleic Acids Res 32 (2004) 2123-2128
15. Goidin D., Mamessier A., Statquet M.-J., Schmitt D., and Berthier-Vergnes O. Ribosomal 18S RNA prevails over glyceraldehyde-3-phosphate dehydrogenase and β-actin genes as internal standards for quantitative comparison of mRNA levels in invasive and noninvasive human melanoma cell subpopulations. Annals of Biochemistry 295 (2000) 17-21
16. Goldoni M., Azzalin G., Macino G., and Cogoni C. Efficient gene silencing by expression of double stranded RNA in Neurospora crassa. Fungal Genetics and Biology 41 (2004) 1016-1024
17. de Groot M.J.A., Bundock P., Hoogkaas P.J.J., and Beijersbergen A.G.M. Agrobacterium tumefaciens-mediated transformation of filamentous fungi. Nature Biotechnology 16 (1998) 839-842
18. Hammond J.B.W. Changes in composition of harvested mushrooms (Agaricus bisporus). Phytochemistry 18 (1979) 415-418
19. Hammond J.B.W., and Nichols R. Changes in respiration and soluble carbohydrates during post-harvest storage of mushrooms (Agaricus bisporus). Journal of the Science of Food and Agriculture 26 (1975) 835-842
20. Hammond J.B.W., and Nichols R. Carbohydrate metabolism in Agaricus bisporus (Lange) Sign.: changes in soluble carbohydrates during growth of mycelium and fruiting body. Journal of General Microbiology 93 (1976) 309-320
21. Heneghan M.N., Costa A.M.S.B., Challen M.P., Mills P.R., Bailey A., and Foster G.D. A comparison of methods for successful triggering of gene silencing in Coprinus cinereus. Molecular Biotechnology 35 (2007) 283-298
22. Hellens R.P., Edwards E.A., Leyland N.R., Bean S., and Mullineaux P.M. pGreen: a versatile and flexible binary Ti vector for Agrobacterium-mediated plant transformation. Plant Molecular Biology 42 (2000) 819-832
23. Hellens R.P., Mullineaux P., and Klee H. A guide to Agrobacterium binary Ti vectors. Trends in Plant Science 5 (2000) 446-451
24. de Jong J.F., Deelstra H.J., Wosten H.A.B., and Lugones L.G. RNA-mediated gene silencing in monokaryons and dikaryons of Schizophyllum commune. Applied Environmental Microbiology 72 (2006) 1267-1269
25. Kingsnorth C.S., Eastwood D.C., and Burton K.S. Cloning and post-harvest expression of serine proteinase transcripts in the cultivated mushroom Agaricus bisporus. Fungal Genetics and Biology 32 (2001) 135-144
26. Lamontagne B., Hannoush R.N., Damha M.J., and Abou Elela S. Molecular requirements for duplex recognition and cleavage by eukaryotic RNase III: discovery of an RNA-dependent DNA cleavage activity of yeast Rnt1p. Journal of Molecular Biology 338 (2004) 401-418
27. Leach K., Odon V., Zhang C., Kim H.K., Henderson J., Warner P., Challen M., and Elliott T. Progress in Agaricus bisporus transformation: Agrobacterium methodologies and development of novel marker genes. Mushroom Science 16 (2004) 93-102
28. Liu H., Cotterell T.R., Pierini L.M., Goldman W.E., and Doering T.L. RNA interference in the pathogenic fungus Cryptococcus noeformans. Genetics 160 (2002) 463-470
29. McGarry A., and Burton K.S. Mechanical-properties of the mushroom, Agaricus bisporus. Mycological Research 98 (1994) 241-245
30. Mikosch T.S.P., Lavrijssen B., Sonnenberg A.S.M., and van Griensven L.J.L.D. Transformation of the cultivated mushroom Agaricus bisporus (Lange) using T-DNA from Agrobacterium tumefaciens. Current Genetics 39 (2001) 35-39
31. Mills P.M., Thomas J.D., Sergeant M.J., Costa A., Collopy P., Bailey A., Foster G., and Challen M.P. Interactions between Agaricus bisporus and the pathogen Verticillium fungicola. In: Avery S., and van West P. (Eds). Stress in Yeasts and Filamentous Fungi. Proceedings of the British Mycological Society Annual Scientific Meeting, 4-7 September 2006 (2007), University of Birmingham
32. Moore D. Developmental biology of the Coprinus cinereus carpophore: metabolic regulation in relation to cap morphogenesis. Experimental Mycology 8 (1985) 283-297
33. Nakayashiki H. RNA silencing in fungi: mechanisms and applications. FEBS Letters 579 (2005) 5950-5957
34. Nakayashiki H., Hanada S., Bao Quoc N., Kadotani N., Tosa Y., and Mayama S. RNA silencing as a tool for exploring gene function in ascomycete fungi. Fungal Genetics and Biology 42 (2004) 275-283
35. Nakayashiki H., Kadotani N., and Mayama S. Evolution and diversification of RNA silencing proteins in fungi. Journal of Molecular Evolution 63 (2006) 127-135
36. Namekawa S.H., Iwabata K., Sugawara H., Hamada F.N., Koshiyama A., Chiku H., Kamada T., and Sakaguchi K. Knockdown of LIM15/DMC1 in the mushroom Coprinus cinereus by double-stranded RNA-mediated gene silencing. Microbiology SGM 151 (2005) 3669-3679
37. Nolan T., Braccini L., Azzalin G., de Toni A., Macino G., and Cogoni C. The post-transcriptional gene silencing machinery functions independantly of DNA methylation to repress a LINE1-like retrotransposon in Neurospora crassa. Nucleic Acids Research 33 (2005) 1564-1573
38. Punt P.J., Oliver R.P., Dingemanse M.A., Pouwels P.H., and van den Hondel C.A.M.J.J. Transformation of Aspergillus based on the hygromycing-B resistance gene from Escherichia coli. Gene 56 (1987) 117-124
39. Rosen K.M., and Villa-Kormaroff L. An alternative method for the visualisation of RNA in formaldehyde agarose gels. Focus 12 (1993) 23-24
40. Sugui J.A., Chang Y.C., and Kwon-Chung K.J. Agrobacterium tumefaciens-mediated transformation of Aspergillus fumigatus: an efficient tool for insertional mutagenesis and targeted gene disruption. Applied Environmental Microbiology 71 (2005) 1789-1802
41. Wagemaker M.J.M., Eastwood D.C., van der Drift C., Jetten M.S.M., Burton K.S., van Griensven L.J.L.D., and Op den Camp H.J.M. Expression of the urease gene of Agaricus bisporus: a tool for studying fruit body formation and post-harvest development. Applied Microbiology and Biotechnology 71 (2006) 486-492
42. Wagemaker M.J.M., Eastwood D.C., van der Drift C., Jetten M.S.M., Burton K.S., van Griensven L.J.L.D., and Op den Camp H.J.M. Argininosuccinate synthetase and argininosuccinate lyase: two ornithine cycle enzymes from Agaricus bisporus. Mycological Research 111 (2007) 493-502
43. Wagemaker M.J.M., Eastwood D.C., van der Drift C., Jetten M.S.M., Burton K.S., van Griensven L.J.L.D., and Op den Camp H.J.M. The role of ornithine aminotransferase in fruiting body formation of the mushroom Agaricus bisporus. Mycological Research 111 (2007) 909-918
44. Wälti M.A., Villalba C., Buser R.M., Grünler A., Aebi M., and Künzler M. Targetted gene silencing in the model mushroom Coprinopsis cinerea (Coprinus cinereus) by expression of homologous hairpin RNAs. Eukaryotic Cell 5 (2006) 732-744