Individual nucleotide bases, not base pairs, are critical for triggering site-specific DNA cleavage by vaccinia topoisomerase

Journal of Biological Chemistry

Volumn 279, Issue 38, 2004, Pages 39718-39726

  Tian, Ligeng ^a   Sayer, Jane M ^b   Jerina, Donald M ^b   Shuman, Stewart ^a  

^a MEMORIAL SLOAN KETTERING CANCER CENTER   (United States)

^b NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ENZYMES; GENETIC ENGINEERING; IMPURITIES;

NUCLEOTIDES; TOPOISOMERASE;

BIOCHEMISTRY;

DNA; DNA TOPOISOMERASE;

ARTICLE; BASE PAIRING; DNA CLEAVAGE; ENZYME ACTIVITY; ESTERIFICATION; NONHUMAN; PRIORITY JOURNAL; VACCINIA;

BASE SEQUENCE; BINDING SITES; DNA; DNA TOPOISOMERASES, TYPE I; MOLECULAR SEQUENCE DATA; NUCLEOTIDES; SUBSTRATE SPECIFICITY; VACCINIA; VIRAL PROTEINS;

VACCINIA;

EID: 4644251969     PISSN: 00219258     EISSN: None     Source Type: Journal    
DOI: 10.1074/jbc.M407376200     Document Type: Article

References (38)

1. Shuman, S., and Prescott, J. (1990) J. Biol. Chem. 265, 17826-17836
2. Hwang, Y., Wang, B., and Bushman, F. D. (1998) J. Virol. 72, 3401-3406
3. Klemperer, N., Lyttle, D. J., Tauzin, D., Traktman, P., and Robinson, A. J. (1995) Virology 206, 203-215
4. Palaniyar, N., Fisher, C., Parks, R., and Evans, D. H. (1996) Virology 221, 351-354
5. Petersen, B. Ø., Hall, R. L., Moyer, R. W., and Shuman, S. (1997) Virology 230, 197-206
6. Krogh, B. O., Cheng, C., Burgin, A., and Shuman, S. (1999) Virology 264, 441-451
7. Cheng, C., Russie, P., Pavletich, N., and Shuman, S. (1998) Cell 92, 841-850
8. Tian, L., Claeboe, C. D., Hecht, S. M., and Shuman, S. (2004) Structure (Lond.) 12, 31-40
9. Shuman, S. (1991) J. Biol. Chem. 266, 11372-11379
10. Shuman, S., and Turner, J. (1993) J. Biol. Chem. 268, 18943-18950
11. Sekiguchi, J., and Shuman, S. (1994) J. Biol. Chem. 269, 31731-31734
12. Sekiguchi, J., and Shuman, S. (1996) J. Biol. Chem. 271, 19436-19442
13. Sekiguchi, J., and Shuman, S. (1996) EMBO J. 15, 3448-3457
14. Cheng, C., and Shuman, S. (1999) Biochemistry 38, 16599-16612
15. Hwang, Y., Burgin, A., and Bushman, F. (1999) J. Biol. Chem. 274, 9160-9168
16. Tian, L., Sayer, J. M., Kroth, H., Kalena, G., Jerina, D. M., and Shuman, S. (2003) J. Biol. Chem. 278, 9905-9911
17. Yakovleva, L., Tian, L., Sayer, J. M., Kalena, G. P., Kroth, H., Jerina, D. M., and Shuman, S. (2003) J. Biol. Chem. 278, 42170-42177
18. Yakovleva, L., Handy, C. J., Sayer, J. M., Pirrung, M., Jerina, D. M., and Shuman, S. (2004) J. Biol. Chem. 279, 23335-23342
19. Krogh, B. O., and Shuman, S. (2000) Mol. Cell 5, 1035-1041
20. Stivers, J. T., Jagadeesh, G. J., Nawrot, B., Stec, W. J., and Shuman, S. (2000) Biochemistry 39, 5561-5572
21. Krogh, B. O., Claeboe, C. D., Hecht, S. M., and Shuman, S. (2001) J. Biol. Chem. 276, 20907-20912
22. Krogh, B. O., and Shuman, S. (2002) J. Biol. Chem. 277, 5711-5714
23. Tian, L., Claeboe, C. D., Hecht, S. M., and Shuman, S. (2003) Mol. Cell 12, 199-208
24. Sekiguchi, J., and Shuman, S. (1994) Nucleic Acids Res. 22, 5360-5365
25. Pourquier, P., Ueng, L., Kohlhagen, G., Mazumder, A., Gupta, M., Kohn, K. W., and Pommier, Y. (1997) J. Biol. Chem. 272, 7792-7796
26. Kingma, P. S., and Osheroff, N. (1997) J. Biol. Chem. 272, 1148-1155
27. Nitiss, J. L., Nitiss, K. C., Rose, A., and Waltman, J. L. (2001) J. Biol. Chem. 276, 26708-26714
28. Shuman, S., Golder, M., and Moss, B. (1988) J. Biol. Chem. 263, 16401-16407
29. Kwon, K., and Stivers, J. T. (2002) J. Biol. Chem. 277, 345-352
30. Shuman, S. (1992) J. Biol. Chem. 267, 8620-8627
31. Sekiguchi, J., Cheng, C., and Shuman, S. (1997) J. Biol. Chem. 272, 15721-15728
32. Seeman, N. C., Rossenberg, J. M., and Rich, A. (1976) Proc. Natl. Acad. Sci. U. S. A. 73, 804-808
33. Kono, H., and Sarai, A. (1999) Proteins 35, 114-131
34. Quo, F., Gopaul, D. N., and Van Duyne, G. D. (1997) Nature 389, 40-46
35. Ennifar, E., Meyer, J. E. W., Buchholz, F., Stewart, A. F., and Suck, D. (2003) Nucleic Acids Res. 31, 5449-5460
36. Chen, Y., Narendra, U., Iype, L. E., Cox, M. M., and Rice, P. A. (2000) Mol. Cell 6, 885-897
37. Aihara, H., Kwon, H. J., Nunes-Duby, S. E., Landy, A., and Ellenberger, T. (2003) Mol. Cell 12, 187-198
38. Redinbo, M. R., Stewart, L., Kuhn, P., Champoux, J. J., and Hol, W. G. J. (1998) Science 279, 1504-1513