메뉴 건너뛰기




Volumn 8, Issue 1, 2004, Pages 45-51

Bacterial diversity of the Inner Mongolian Baer Soda Lake as revealed by 16S rRNA gene sequence analyses

Author keywords

16S rRNA gene; Alkaliphilic bacteria; Biodiversity; Phylogenetic analysis; Soda lake

Indexed keywords

ALCALIGENES; ALPHAPROTEOBACTERIA; BETAPROTEOBACTERIA; BREVUNDIMONAS; COMAMONAS; DELTAPROTEOBACTERIA; GAMMAPROTEOBACTERIA; KLEBSIELLA; NEGIBACTERIA; POSIBACTERIA; STENOTROPHOMONAS;

EID: 4644225229     PISSN: 14310651     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00792-003-0358-z     Document Type: Article
Times cited : (64)

References (45)
  • 1
    • 0032987957 scopus 로고    scopus 로고
    • Phylogeny and polyphasic taxonomy of aulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter
    • Abraham WR, Strompl C, Meyer H, Lindholst S, Moore ER, Christ R, Vancanneyt M, Tindall BJ, Bennasar A, Smit J, Tesar M (1999) Phylogeny and polyphasic taxonomy of aulobacter species. Proposal of Maricaulis gen. nov. with Maricaulis maris (Poindexter) comb. nov. as the type species, and emended description of the genera Brevundimonas and Caulobacter. Int J Syst Bacteriol 49:1053-1073
    • (1999) Int J Syst Bacteriol , vol.49 , pp. 1053-1073
    • Abraham, W.R.1    Strompl, C.2    Meyer, H.3    Lindholst, S.4    Moore, E.R.5    Christ, R.6    Vancanneyt, M.7    Tindall, B.J.8    Bennasar, A.9    Smit, J.10    Tesar, M.11
  • 2
    • 0028946084 scopus 로고
    • Phylogenetic identification and in situ detection of individual microbial cells without cultivation
    • Amann RI, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
    • (1995) Microbiol Rev , vol.59 , pp. 143-169
    • Amann, R.I.1    Ludwig, W.2    Schleifer, K.H.3
  • 4
    • 0029025721 scopus 로고
    • Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors
    • Bond PL, Hugenholtz P, Keller J, Blackall LL (1995) Bacterial community structures of phosphate-removing and non-phosphate-removing activated sludges from sequencing batch reactors. Appl Environ Microbiol 61:1910-1916
    • (1995) Appl Environ Microbiol , vol.61 , pp. 1910-1916
    • Bond, P.L.1    Hugenholtz, P.2    Keller, J.3    Blackall, L.L.4
  • 5
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: Evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J, Triplett EW (1997) Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63:2647-2653
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 6
    • 1842362290 scopus 로고
    • Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli
    • Brosius J, Palmer JL, Kennedy JP, Noller HF (1978) Complete nucleotide sequence of a 16S ribosomal RNA gene from Escherichia coli. Proc Natl Acad Sci USA 75:4801-4805
    • (1978) Proc Natl Acad Sci USA , vol.75 , pp. 4801-4805
    • Brosius, J.1    Palmer, J.L.2    Kennedy, J.P.3    Noller, H.F.4
  • 7
    • 0034304278 scopus 로고    scopus 로고
    • Microbiology of acidic, geothermal springs of Montserrat: Environmental rDNA analysis
    • Burton NP, Norris PR (2000) Microbiology of acidic, geothermal springs of Montserrat: environmental rDNA analysis. Extremophiles 4:315-320
    • (2000) Extremophiles , vol.4 , pp. 315-320
    • Burton, N.P.1    Norris, P.R.2
  • 8
    • 0034069650 scopus 로고    scopus 로고
    • Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria
    • Dojka MA, Harris JK, Pace NR (2000) Expanding the known diversity and environmental distribution of an uncultured phylogenetic division of bacteria. Appl Environ Microbiol 66:1617-1621
    • (2000) Appl Environ Microbiol , vol.66 , pp. 1617-1621
    • Dojka, M.A.1    Harris, J.K.2    Pace, N.R.3
  • 9
    • 0034992487 scopus 로고    scopus 로고
    • Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov.
    • Drancourt M, Bollet C, Carta A, Rousselier P (2001) Phylogenetic analyses of Klebsiella species delineate Klebsiella and Raoultella gen. nov., with description of Raoultella ornithinolytica comb. nov., Raoultella terrigena comb. nov. and Raoultella planticola comb. nov. Int J Syst Evol Microbiol 51:925-932
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 925-932
    • Drancourt, M.1    Bollet, C.2    Carta, A.3    Rousselier, P.4
  • 11
    • 0030762263 scopus 로고    scopus 로고
    • Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils
    • Felske A, Rheims H, Wolterink A, Stackebrandt E, Akkermans AD (1997) Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143 (Pt 9):2983-2989
    • (1997) Microbiology , vol.143 , Issue.9 PART , pp. 2983-2989
    • Felske, A.1    Rheims, H.2    Wolterink, A.3    Stackebrandt, E.4    Akkermans, A.D.5
  • 12
    • 0036136241 scopus 로고    scopus 로고
    • Phylogenetic analysis reveals multiple lateral transfers of adenosine-5′-phosphosulfate reductase genes among sulfate-reducing microorganisms
    • Friedrich MW (2002) Phylogenetic analysis reveals multiple lateral transfers of adenosine-5′-phosphosulfate reductase genes among sulfate-reducing microorganisms. J Bacteriol 184(1):278-289
    • (2002) J Bacteriol , vol.184 , Issue.1 , pp. 278-289
    • Friedrich, M.W.1
  • 13
    • 0034075457 scopus 로고    scopus 로고
    • Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus
    • Goto K, Omura T, Hara Y, Sadaie Y (2000) Application of the partial 16S rDNA sequence as an index for rapid identification of species in the genus Bacillus. J Gen Appl Microbiol 46:1-8
    • (2000) J Gen Appl Microbiol , vol.46 , pp. 1-8
    • Goto, K.1    Omura, T.2    Hara, Y.3    Sadaie, Y.4
  • 14
  • 15
    • 0033136102 scopus 로고    scopus 로고
    • Novel archaeal phylotypes from an East African alkaline saltern
    • Grant S, Grant WD, Jones BE, Kato C, Li L (1998) Novel archaeal phylotypes from an East African alkaline saltern. Extremophiles 3:139-145
    • (1998) Extremophiles , vol.3 , pp. 139-145
    • Grant, S.1    Grant, W.D.2    Jones, B.E.3    Kato, C.4    Li, L.5
  • 16
    • 0029660135 scopus 로고    scopus 로고
    • Phylogenetic analysis of the bacterial communities in marine sediments
    • Gray JP, Herwig RP (1996) Phylogenetic analysis of the bacterial communities in marine sediments. Appl Environ Microbiol 62:4049-4059
    • (1996) Appl Environ Microbiol , vol.62 , pp. 4049-4059
    • Gray, J.P.1    Herwig, R.P.2
  • 17
    • 0031662188 scopus 로고    scopus 로고
    • Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity
    • Hugenholtz P, Goebel BM, Pace NR (1998) Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity. J Bacteriol 180:4765-4774
    • (1998) J Bacteriol , vol.180 , pp. 4765-4774
    • Hugenholtz, P.1    Goebel, B.M.2    Pace, N.R.3
  • 19
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro HN (ed), Academic, New York
    • Jukes TH, Cantor CR (1969) Evolution of protein molecules. In: Munro HN (ed) Mammalian protein metabolism, vol III, Academic, New York, pp 21-132
    • (1969) Mammalian Protein Metabolism , vol.3 , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 20
    • 51249171800 scopus 로고
    • Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria
    • Liesack W, Weyland H, Stackebrandt E (1991) Potential risks of gene amplification by PCR as determined by 16S rDNA analysis of a mixed-culture of strict barophilic bacteria. Microb Ecol 21:191-198
    • (1991) Microb Ecol , vol.21 , pp. 191-198
    • Liesack, W.1    Weyland, H.2    Stackebrandt, E.3
  • 22
    • 0035164612 scopus 로고    scopus 로고
    • Comparison of antifungal activities and 16S ribosomal DNA sequences of clinical and environmental isolates of Stenotrophomonas maltophilia
    • Minkwitz A, Berg G (2001) Comparison of antifungal activities and 16S ribosomal DNA sequences of clinical and environmental isolates of Stenotrophomonas maltophilia. J Clin Microbiol 39:139-145
    • (2001) J Clin Microbiol , vol.39 , pp. 139-145
    • Minkwitz, A.1    Berg, G.2
  • 25
    • 0027237487 scopus 로고
    • Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983
    • Palleroni NJ, Bradbury JF (1993) Stenotrophomonas, a new bacterial genus for Xanthomonas maltophilia (Hugh 1980) Swings et al. 1983. Int J Syst Bacteriol 43:606-609
    • (1993) Int J Syst Bacteriol , vol.43 , pp. 606-609
    • Palleroni, N.J.1    Bradbury, J.F.2
  • 26
    • 0035019440 scopus 로고    scopus 로고
    • Alkalispirillum mobile gen. nov., spec, nov., an alkaliphilic non-phototrophic member of the Ectothiorhodospiraceae
    • Rijkenberg MJ, Kort R, Hellingwerf KJ (2001) Alkalispirillum mobile gen. nov., spec, nov., an alkaliphilic non-phototrophic member of the Ectothiorhodospiraceae. Arch Microbiol 175:369-375
    • (2001) Arch Microbiol , vol.175 , pp. 369-375
    • Rijkenberg, M.J.1    Kort, R.2    Hellingwerf, K.J.3
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 29
    • 0025860931 scopus 로고
    • Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing
    • Schmidt TM, DeLong EF, Pace NR (1991) Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol 173:4371-4378
    • (1991) J Bacteriol , vol.173 , pp. 4371-4378
    • Schmidt, T.M.1    DeLong, E.F.2    Pace, N.R.3
  • 30
    • 0035036859 scopus 로고    scopus 로고
    • Alcaligenes faecalis subsp. parafaecalis subsp. nov., a bacterium accumulating poly-beta-hydroxybutyrate from acetone-butanol bioprocess residues
    • Schroll G, Busse HJ, Parrer G, Rolleke S, Lubitz W, Denner EB (2001) Alcaligenes faecalis subsp. parafaecalis subsp. nov., a bacterium accumulating poly-beta-hydroxybutyrate from acetone-butanol bioprocess residues. Syst Appl Microbiol 24:37-43
    • (2001) Syst Appl Microbiol , vol.24 , pp. 37-43
    • Schroll, G.1    Busse, H.J.2    Parrer, G.3    Rolleke, S.4    Lubitz, W.5    Denner, E.B.6
  • 31
    • 0035071882 scopus 로고    scopus 로고
    • Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp.nov., novel and Thioalkalivibrio denitrificancs sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes
    • Sorokin DY, Lysenko AM, Mityushina LL, Tourova TP, Jones BE, Rainey FA, Robertson LA, Kuenen GJ (2001) Thioalkalimicrobium aerophilum gen. nov., sp. nov. and Thioalkalimicrobium sibericum sp. nov., and Thioalkalivibrio versutus gen. nov., sp. nov., Thioalkalivibrio nitratis sp.nov., novel and Thioalkalivibrio denitrificancs sp. nov., novel obligately alkaliphilic and obligately chemolithoautotrophic sulfur-oxidizing bacteria from soda lakes. Int J Syst Evol Microbiol 51:565-580
    • (2001) Int J Syst Evol Microbiol , vol.51 , pp. 565-580
    • Sorokin, D.Y.1    Lysenko, A.M.2    Mityushina, L.L.3    Tourova, T.P.4    Jones, B.E.5    Rainey, F.A.6    Robertson, L.A.7    Kuenen, G.J.8
  • 32
    • 0002211974 scopus 로고
    • Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies
    • Akkermans ADL, van Elsas JD, de Bruijn FJ (eds). Kluwer, Dordrecht
    • Stackebrandt E, Rainey FA (1995) Partial and complete 16S rDNA sequences, their use in generation of 16S rDNA phylogenetic trees and their implications in molecular ecological studies. In: Akkermans ADL, van Elsas JD, de Bruijn FJ (eds) Molecular microbial ecology manual. Kluwer, Dordrecht, pp 1-17
    • (1995) Molecular Microbial Ecology Manual , pp. 1-17
    • Stackebrandt, E.1    Rainey, F.A.2
  • 33
    • 0030067991 scopus 로고    scopus 로고
    • Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR
    • Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625-630
    • (1996) Appl Environ Microbiol , vol.62 , pp. 625-630
    • Suzuki, M.T.1    Giovannoni, S.J.2
  • 34
    • 0031904685 scopus 로고    scopus 로고
    • Specific ribosomal DNA sequences from diverse environmental settings correlate with environmental contaminants
    • Tanner MA, Goebel BM, Dojka MA, Pace NR (1998) Specific ribosomal DNA sequences from diverse environmental settings correlate with environmental contaminants. Appl Environ Microbiol 64:3110-3113
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3110-3113
    • Tanner, M.A.1    Goebel, B.M.2    Dojka, M.A.3    Pace, N.R.4
  • 35
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving sensitivity of progressive multiple sequence alignments through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-7680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-7680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 37
    • 3442894670 scopus 로고    scopus 로고
    • Phylogenetic diversity of alkaliphilic saccharolytic bacteria isolated from soda lakes
    • Tourova TP, Garnova ES, Zhilina TN (1999) Phylogenetic diversity of alkaliphilic saccharolytic bacteria isolated from soda lakes. Microbiology 68:701-709
    • (1999) Microbiology , vol.68 , pp. 701-709
    • Tourova, T.P.1    Garnova, E.S.2    Zhilina, T.N.3
  • 38
    • 0025903592 scopus 로고
    • Rapid method for direct extraction of DNA from soil and sediments
    • Tsai YL, Olson BH (1991) Rapid method for direct extraction of DNA from soil and sediments. Appl Environ Microbiol 57:1070-1074
    • (1991) Appl Environ Microbiol , vol.57 , pp. 1070-1074
    • Tsai, Y.L.1    Olson, B.H.2
  • 39
    • 0028509254 scopus 로고
    • TREECON for Windows: A software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment
    • Van de Peer Y, De Wachter R (1994). TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Comput Appl Biosci 10:569-570
    • (1994) Comput Appl Biosci , vol.10 , pp. 569-570
    • Van De Peer, Y.1    De Wachter, R.2
  • 40
    • 0345195995 scopus 로고    scopus 로고
    • Determination of microbial diversity in environmental samples: Pitfalls of PCR-based rRNA analysis
    • Von Wintzingerode F, Gobel UB, Stackebrandt E (1997) Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiol Rev 21:213-229
    • (1997) FEMS Microbiol Rev , vol.21 , pp. 213-229
    • Von Wintzingerode, F.1    Gobel, U.B.2    Stackebrandt, E.3
  • 41
    • 0025366456 scopus 로고
    • 16SrRNA sequences reveal numerous uncultured microorganisms in a natural community
    • Ward DM, Weller R, Bateson MM (1990) 16SrRNA sequences reveal numerous uncultured microorganisms in a natural community. Nature 345:63-65
    • (1990) Nature , vol.345 , pp. 63-65
    • Ward, D.M.1    Weller, R.2    Bateson, M.M.3
  • 42
    • 0025832054 scopus 로고
    • Polyphasic taxonomic study of the emended genus Comamonas: Relationship to Aquaspirillum aquaticum, E. Falsen group 10, and other clinical isolates
    • Willems A, Pot B, Falsen E, Vandamme P, Gillis M, Kersters K, De Ley J (1991) Polyphasic taxonomic study of the emended genus Comamonas: relationship to Aquaspirillum aquaticum, E. Falsen group 10, and other clinical isolates. Int J Syst Bacteriol 41:427-444
    • (1991) Int J Syst Bacteriol , vol.41 , pp. 427-444
    • Willems, A.1    Pot, B.2    Falsen, E.3    Vandamme, P.4    Gillis, M.5    Kersters, K.6    De Ley, J.7
  • 43
    • 0000017839 scopus 로고    scopus 로고
    • The alkaliphilic microbial community and its functional diversity
    • Zavarzin GA, Zhilina TN, Kevbrin VV (1999) The alkaliphilic microbial community and its functional diversity. Mikrobiologiya 68:579-599
    • (1999) Mikrobiologiya , vol.68 , pp. 579-599
    • Zavarzin, G.A.1    Zhilina, T.N.2    Kevbrin, V.V.3
  • 44
    • 21244462720 scopus 로고    scopus 로고
    • Diversity of alkaliphilic bacteria in Hailaer soda lakes, Inner Mongolia Autonomous Region of China
    • Zhang W, Mao W, Xue Y, Ma Y, Zhou P (2001) Diversity of alkaliphilic bacteria in Hailaer soda lakes, Inner Mongolia Autonomous Region of China (in Chinese). Biodivers Sci 9:44-50
    • (2001) Biodivers Sci , vol.9 , pp. 44-50
    • Zhang, W.1    Mao, W.2    Xue, Y.3    Ma, Y.4    Zhou, P.5
  • 45
    • 0028227205 scopus 로고
    • Alkaliphilic anaerobic community at pH10
    • Zhilina TN, Zavarzin GA (1994) Alkaliphilic anaerobic community at pH10. Curr Microbiol 29:109-112
    • (1994) Curr Microbiol , vol.29 , pp. 109-112
    • Zhilina, T.N.1    Zavarzin, G.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.