Genetic analysis of opaque2 modifier loci in quality protein maize

Theoretical and Applied Genetics

Volumn 117, Issue 2, 2008, Pages 157-170

  Holding, David R ^a   Hunter, Brenda G ^a   Chung, Taijoon ^a,b   Gibbon, Bryan C ^a,c   Ford, Clark F ^d   Bharti, Arvind K ^e   Messing, Joachim ^e   Hamaker, Bruce R ^f   Larkins, Brian A ^a  

^a UNIVERSITY OF ARIZONA   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

^c BAYLOR UNIVERSITY   (United States)

^d IOWA STATE UNIVERSITY   (United States)

^e RUTGERS UNIVERSITY   (United States)

^f PURDUE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELL DEATH; ETHYLENE; MICROFLUIDICS; NUCLEIC ACIDS; RNA;

ABA SIGNALING; DIFFERENTIALLY EXPRESSED GENES; GENETIC ANALYSES; MICROARRAY HYBRIDIZATION; MODE OF ACTION; PROGRAMMED CELL DEATH (PCD); QUALITY PROTEIN MAIZE (QPM); SPRINGER (CO); STARCHY ENDOSPERMS;

GENES;

VEGETABLE PROTEIN;

ARTICLE; CHROMOSOME MAP; CHROMOSOME SEGREGATION; CROSS BREEDING; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC LINKAGE; GENETIC MARKER; GENETICS; INBREEDING; MAIZE; METABOLISM; QUANTITATIVE TRAIT LOCUS;

CHROMOSOME SEGREGATION; CROSSES, GENETIC; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC MARKERS; INBREEDING; LINKAGE (GENETICS); PHYSICAL CHROMOSOME MAPPING; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI; ZEA MAYS;

ZEA MAYS;

EID: 46249114637     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00122-008-0762-y     Document Type: Article

References (59)

1. Belousov AA (1987) Genetic analysis of modified endosperm texture in opaque2 maize. Sov Genet 23:459-464
2. Bhan MK, Bhandari N, Bahl R (2003) Management of the severely malnourished child: perspective from developing countries. Br Med J 326:146-151
3. Bjarnason M, Vasal SK (1992) Breeding quality protein maize (QPM). Plant Breed 9:181-216
4. Coleman CE, Herman EM, Takasaki K, Larkins BA (1996) The maize γ-zein sequesters α-zein and stabilizes its accumulation in protein bodies of transgenic tobacco endosperm. Plant Cell 12:2335-2345
5. Coleman CE, Clore AM, Ranch JP, Higgins R, Lopes MA, Larkins BA. (1997) Expression of a mutant α-zein creates the floury2 phenotype in transgenic maize. Proc Natl Acad Sci USA 94:7094-7097
6. Dannenhoffer JM, Bostwick DE, Or E, Larkins BA (1995) opaque15, a novel mutation with properties of an opaque2 modifier. Proc Natl Acad Sci USA 92:1931-1935
7. Deutscher D (1978) The current status of breeding for protein quality in corn. In: Friedman M (ed) Nutritional improvement of food and feed grains. Plenum, New York, pp 281-300
8. Erasmus C, Taylor JRN (2004) Optimising the determination of maize endosperm vitreousness by a rapid non-destructive image analysis technique. J Sci Agric 84:920-930
9. Ewing B, Green P (1998) Base-calling of automated sequencer traces using phred II. Error probabilities. Genome Res 8:186-194
10. Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred I. Accuracy assessment. Genome Res 8:175-185
11. Geetha KB, Lending CR, Lopes MA, Wallace JC, Larkins BA (1991) opaque-2 modifiers increase gamma-zein synthesis and alter its distribution in maize endosperm. Plant Cell 3:1207-1219
12. Geevers HO, Lake JK (1992) Development of modified opaque-2 maize in South Africa. In: Mertz ET (ed) Quality protein maize. American Association of Cereal Chemists, St. Paul, MN, pp 49-78
13. Gibbon BC, Wang X, Larkins BA (2003) Altered starch structure is associated with endosperm modification in quality protein maize. Proc Nat Acad Sci USA 100:15329-15334
14. Giroux MJ, Boyer C, Feix G, Hannah LC (1994) Coordinated transcriptional regulation of storage product genes in maize endosperm. Plant Physiol 106:713-722
15. Gordon D, Abajian C, Green P (1998) Consed: a graphical tool for sequence finishing. Genome Res 8:195-202
16. Guo H, Ecker JR (2004) The ethylene signaling pathway: new insights. Curr Opin Plant Biol 7:40-49
17. Habben JE, Larkins BA (1995) Improving protein quality in seeds. In: Kijel J, Galili G (eds) Seed development and germination. Marcel Dekker, NY, pp 791-810
18. Hirayama T, Shinozaki K (2007) Perception and transduction of abscisic acid signals: keys to the function of the versatile plant hormone, ABA. Trends Plant Sci 12:343-351
19. Hochholdinger F, Hoecker N (2007) Towards the molecular basis for heterosis. Trends Plant Sci 12:427-432
20. Holding DR, Larkins BA (2006) The development and importance of zein protein bodies in maize endosperm. Maydica 51:243-254
21. Holding DR, Otegui M, Li B, Meeley RB, Dam T, Hunter BG, Jung R, Larkins BA (2007) The maize Floury1 gene encodes a novel ER protein involved in zein protein-body formation. Plant Cell 19:2569-2582
22. Hunter BG, Beatty MK, Singletary GW, Hamaker BR, Dilkes BP, Larkins BA, Jung R (2002) Maize opaque endosperm mutations create extensive changes in patterns of gene expression. Plant Cell 14:2591-2612
23. Kaufman RJ (1999) Stress signaling from the lumen of the endoplasmic reticulum: coordination of gene transcriptional and translational controls. Genes Dev 13:1211-1233
24. Kim CS, Hunter BG, Kraft J, Boston RS, Yans S, Jung R, Larkins BA (2004) A defective signal peptide in a 19-kD α-zein protein causes the unfolded protein response and an opaque endosperm phenotype in the maize De*-B30 mutant. Plant Physiol 134:380-387
25. Kim CS, Gibbon BC, Gillikin JW, Larkins BA, Boston RS, Jung R (2006) The maize Mucronate mutation is a deletion in the 16-kDa γ-zein gene that induces the unfolded protein response. Plant J 48:440-451
26. Kniep KR, Mason SC (1989) Kernel breakage and density of normal and opaque2 maize grain as influenced by irrigation and nitrogen. Crop Sci 29:158-163
27. Lawrence CJ, Schaeffer ML, Seigfried TE, Campbell DA, Harper LC (2007) MaizeGDB's new data types, resources and activities. Nucleic Acids Res 35:D895-900
28. Li PX, Hardacre AK, Campanella OH, Kirkpatrick KJ (1996) Determination of endosperm characteristics of 38 corn hybrids using the Stenvert hardness test. Cereal Chem 73:466-471
29. Lending CR, Larkins BA (1989) A model for protein body formation in corn: immunolocalization of zeins in developing maize endosperm by light and electron microscopy. Plant Cell 1:1011-1023
30. Lopes MA, Larkins BA (1991) Gamma-zein content is related to endosperm modification in quality protein maize. Crop Sci 31:1655-1662
31. Lopes MA, Larkins BA (1995) Genetic analysis of opaque2 modifier gene activity in maize endosperm. Theor Appl Genet 19:274-281
32. Lopes MA, Takasaki K, Bostwick DE, Helentjaris T, Larkins BA (1995) Identification of two opaque2 modifier loci in quality-protein-maize. Mol Gen Genet 247:603-613
33. Manly KF, Cudmore RH Jr, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930-932
34. Mertz ET (1992) Quality protein maize. American Association of Cereal Chemists, St. Paul, MN
35. Michelmore RW, Paran I, Keseli RV (1991) Identification of markers linked to disease-resistant genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregation populations. Proc Natl Acad Sci USA 88:9828-9832
36. Munck L (1992) The case of high-lysine barley breeding. In: Shewry P (ed) Barley, genetics, biochemistry, molecular biology and biotechnology. CAB International, Wallingford, pp 573-601
37. Nelson OE Jr, Rines HW (1962) The enzymatic deficiency in the waxy mutant of maize. Biochem Biophys Res Comm 9:297-300
38. Ortega EI, Bates LS (1983) Biochemical and agronomic studies of two modified hard-endosperm opaque2 maize (Zea mays L.) populations. Cereal Chem 60:107-111
39. Pingali PL (2001) CIMMYT 1999-2000 Facts and trends meeting world maize needs. Technological opportunities and priorities for the public sector. CIMMYT, Mexico City
40. Prasanna BM, Vasal SK, Kassahun B, Singh NN (2001) Quality protein maize. Curr Sci 81:1308-1319
41. Quarrie SA, Lazic-Jancic V, Kovacevic D, Steed A, Pekic S (1999) Bulk segregant analysis with molecular markers and its use for improving drought resistance in maize. J Exp Bot 50:1299-1306
42. Schmidt RJ (1993) Opaque2 and zein gene expression. In: Verma DPS (ed) Control of plant gene expression. CRC Press, Boca Raton, FL, pp 337-355
43. Segal G, Song R, Messing J (2003) A new opaque variant of maize by a single dominant RNAi-inducing transgene. Genetics 165:387-397
44. Séne M, Thévenot C, Hoffmann D, Bénétrix F, Causse M, Prioul J-L (2001) QTLs for grain dry milling properties, composition and vitreousness in maize recombinant inbred lines. Theor Appl Genet 102:591-599
45. Shen B, Carneiro N, Torresjerez I, Stevenson B, McCreery T, Helentjaris T, Baysdorfer C, Almira E, Ferl RJ, Habben JE, Larkins B (1994) Partial sequencing and mapping of clones from two maize cDNA libraries. Plant Mol Biol 26:1085-1101
46. Smalle J, Vierstra RD (2004) The ubiquitin 26S proteasome proteolytic pathway. Annu Rev Plant Biol 55:555-590
47. Sreenivasulu N, Radchuk V, Strickert M, Miersch O, Weschke W, Wobus U (2006) Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA-regulated maturation in developing barley seeds. Plant J 47:310-327
48. Tomkins JP, Davis G, Main D, Yim YS, Duru N, Muskat T, Goicoechea JL, Frisch DA, Coe EH Jr, Wing RA (2002) Construction and characterization of a deep-coverage bacterial artificial chromosome library for maize. Crop Sci 42:928-933
49. Tsai CY, Larkins BA, Glover DV (1978) Interaction of the opaque-2 gene with starch-forming mutant genes on the synthesis of zein in maize endosperm. Biochem Genet 16:883-896
50. Vasal SK, Villegas E, Bjarnason M, Gelaw B, Goertz P (1980) Genetic modifiers and breeding strategies in developing hard endosperm opaque2 materials. In: Pollmer WG, Phillips RH (eds) Quality traits of maize for grain and silage use. Martinus Nijhoff, London, pp 37-73
51. Vasil IK (1998) Biotechnology and food security for the 21st century: a real world perspective. Nat Biotech 16:399-400
52. Vieira J, Messing J (1982) The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers. Gene 19:259-268
53. Wallace JC, Lopes MA, Paiva E, Larkins BA (1990) New methods for extraction and quantification of zeins reveal a high content of gamma-zein in modified opaque-2 maize. Plant Physiol 92:191-196
54. Woo YM, Hu DWN, Larkins BA, Jung R (2001) Genomic analysis of genes expressed in maize endosperm identifies novel seed proteins and clarifies patterns of zein gene expression. Plant Cell 13:2297-2317
55. Yanagisawa S, Yoo SD, Sheen J (2003) Differential regulation of EIN3 stability by glucose and ethylene signaling in plants. Nature 425:521-525
56. Yim YS, Davis GL, Duru NA, Musket TA, Linton EW, Messing JW, McMullen MD, Soderlund CA, Polacco ML, Gardiner JM, Coe EH Jr (2002) Characterization of three maize bacterial artificial chromosome libraries toward anchoring of the physical map to the genetic map using high-density bacterial artificial chromosome filter hybridization. Plant Physiol 130:1686-1696
57. Young TE, Gallie DR (2000) Regulation of programmed cell death in maize endosperm by abscisic acid. Plant Mol Biol 42:397-414
58. Young TE, Gallie DR, DeMason DA (1997) Ethylene-mediated programmed cell death during maize endosperm development of wild type and shrunken2 genotypes. Plant Physiol 115:737-751
59. Young VR, Scrimshaw NS, Pellet PL (1998) Significance of dietary protein source in human nutrition: animal and/or plant proteins? In: Waterlow JC, Armstrong DG, Fowden L, Riley R (eds) Feeding a world population of more than eight billion people. Oxford University Press in associate with Rank Prize Funds, New York, pp 205-221