A chromosome map of the Fl;avescence dorée phytoplasma

Microbiology

Volumn 154, Issue 5, 2008, Pages 1454-1463

  Malembic Maher, Sylvie ^a,b   Constable, Fiona ^a,c,d,e   Cimerman, Agnès ^a,b   Arnaud, Guillaume ^a,b   Carle, Patricia ^a,b   Foissac, Xavier ^a,b   Boudon Padieu, Elisabeth ^a,c,d  

^a CEMAGREF   (France)

^b UNIVERSITÉ DE BORDEAUX   (France)

^c UNIVERSITÉ DE BOURGOGNE   (France)

^d CNRS   (France)

^e DEPARTMENT OF PRIMARY INDUSTRIES   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; BACTERIAL RNA; PROTEIN BSSH2; PROTEIN EAG1; PROTEIN MLU1; PROTEIN SAL1; RIBOSOME RNA; BACTERIAL DNA; BACTERIAL PROTEIN; ENDODEOXYRIBONUCLEASE BSSHII; ENDODEOXYRIBONUCLEASE MLUI; ENDODEOXYRIBONUCLEASE SALI; ENDODEOXYRIBONUCLEASE XMAIII; TYPE II SITE SPECIFIC DEOXYRIBONUCLEASE;

ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; CHROMOSOME MAP; CHROMOSOME SIZE; CONTROLLED STUDY; FLAVESCENCE DOREE; GENE ISOLATION; GENE LOCUS; GENE SEQUENCE; LIFE CYCLE ASSESSMENT; MOLECULAR CLONING; MOLECULAR PROBE; MOLLICUTES; NONHUMAN; NUCLEOTIDE SEQUENCE; OPERON; PHYTOPLASMA; PRIORITY JOURNAL; RESTRICTION FRAGMENT; RESTRICTION MAPPING; SOUTHERN BLOTTING; SUPPRESSION SUBTRACTIVE HYBRIDIZATION; VICIA FABA; DNA SEQUENCE; FRANCE; GENETICS; ITALY; LEGUME; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PULSED FIELD GEL ELECTROPHORESIS; RNA GENE;

BACTERIA (MICROORGANISMS); CANDIDATUS PHYTOPLASMA; FLAVESCENCE DOREE PHYTOPLASMA; MOLLICUTES; VICIA FABA;

BACTERIAL PROTEINS; BLOTTING, SOUTHERN; DEOXYRIBONUCLEASES, TYPE II SITE-SPECIFIC; DNA, BACTERIAL; ELECTROPHORESIS, GEL, PULSED-FIELD; FABACEAE; FRANCE; GENES, RRNA; ITALY; MOLECULAR SEQUENCE DATA; PHYSICAL CHROMOSOME MAPPING; PHYTOPLASMA; SEQUENCE ANALYSIS, DNA;

EID: 46249099947     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/013888-0     Document Type: Article

References (45)

1. Angelini, E., Clair, D., Borgo, M., Bertaccini, A. & Boudon-Padieu, E. (2001). Flavescence dorée in France and Italy - occurrence of closely related phytoplasma isolates and their near relationships to Palatinate grapevine yellows and an alder yellows phytoplasma. Vitis 40, 79-86.
2. Angelini, E., Negrisolo, E., Clair, D., Borgo, M. & Boudon-Padieu, E. (2003). Phylogenetic relationships among Flavescence dorée strains and related phytoplasmas determined by heteroduplex mobility assay and sequence of ribosomal and nonribosomal DNA. Plant Pathol 52, 663-672.
3. Arnaud, G. (2006). Diversité génétique du phytoplasme de la Flavescence dorée de la vigne et des phytoplasmes apparentés: variabilité des loci secY-map et uvrB-degV. PhD thesis, University Victor Ségalen Bordeaux 2, France.
4. Arnaud, G., Malembic-Maher, S., Solar, P., Bonnet, P., Maixner, M., Marcone, C., Boudon-Padieu, E. & Foissac, X. (2007). Multilocus sequence typing confirms the close genetic inter-relatedness between three distinct flavescence dorȩ phytoplasma strain dusters and group 16SrV phytoplasmas infecting grapevine and alder in Europe. Appl Environ Microbiol 73, 4001-4010.
5. Bai, X., Zhang, J., Ewing, A., Miller, S. A., Jancso Radek, A., Shevchenko, D. V., Tsukerman, K., Walunas, T., Lapidus, A. & other authors (2006). Living with genome instability: the adaptation of phytoplasmas to diverse environments of their insect and plant hosts. J Bacteriol 188, 3682-3696.
6. Barré, A., de Daruvar, A. & Blanchard, A. (2004). MolliGen, a database dedicated to the comparative genomics of Mollicutes. Nucleic Acids Res 32, D307-D310.
7. Boudon-Padieu, E. (2002). Flavescence dorée of the grapevine: knowledge and new developments in epidemiology, etiology and diagnosis. Atti Giornate Fitopatol 1, 15-34.
8. Caudwell, A., Kuszala, C., Bachelier, J. C. & Larrue, J. (1970). Transmission de la Flavescence dorée de la vigne aux plantes herbacées par l'allongement du temps d'utilisation de la cicadelle Scaphoideus littoralis Ball et l'étude de sa survie sur un grand nombre d'espèces vģétales. Ann Phytopathol 2, 415-428.
9. Caudwell, A., Kuszala, C., Larrue, J. & Bachelier, J. C., (1972). Transmission de la Flavescence dorée de la fève à la fève par des cicadelles des genres Euscelis et Euscelidius. Intervention possible de ces insectes dans l'épidémiologie du Bois noir en Bourgogne. Ann Phytopathol, 181-189.
10. Caudwell, A., Kuszala, C. & Larrue, J. (1973). Techniques utilisables pour l'étude de la Flavescence dorée de la vigne. Riv Patol Veg 9, 269-276.
11. Christensen, N. M., Axelsen, K. B., Nicolaisen, M. & Schulz, A. (2005). Phytoplasmas and their interactions with hosts. Trends Plant Sci 10, 526-535.
12. Cimerman, A., Arnaud, G. & Foissac, X. (2006). Stolbur phytoplasma genome survey achieved using a suppression subtractive hybridization approach with high specificity. Appl Environ Microbiol 72, 3274-3283.
13. Clair, D., Larrue, J., Aubert, G., Gillet, J., Cloquemin, G. & Boudon-Padieu, E. (2003). A multiplex nested-PCR assay for sensitive and simultaneous detection and direct identification of phytoplasma in the elm yellows group and stolbur group and its use in survey of grapevine yellows in France. Vitis 42, 151-157.
14. Daire, X., Boudon-Padieu, E., Bervilie, A., Schneider, B. & Caudwell, A. (1992). Cloned DNA probes for detection of grapevine flavescence dorée mycoplasma-like organism (MLO). Ann Appl Biol 121, 95-103.
15. Daire, X., Clair, D., Reinert, W. & Boudon-Padieu, E. (1997). Detection and differentiation of grapevine yellows phytoplasmas belonging to the elm yellows group and to the stolbur subgroup by PCR amplification of non-ribosomal DNA. Eur J Plant Pathol 103, 507-514.
16. Deng, S, J. & Hiruki, C. (1991). Amplification of 16S ribosomal-RNA genes from culturable and nonculturable mollicutes. J Microbiol Methods 14, 53-61.
17. Firrao, G., Smart, C. D. & Kirkpatrick, B. C. (1996). Physical map of the western X-disease phytoplasma chromosome. J Bacteriol 178, 3985-3988.
18. IRPCM Phytoplasma/Spiroplasma Working Team - Phytoplasma taxonomy group (2004). 'Candidatus Phytoplasma', a taxon for the wall-less, non-helical prokaryotes that colonize plant phloem and insects. Int J Syst Evol Microbiol 54, 1243-1255.
19. Krause, D. C. & Mawn, C. B. (1990). Physical analysis and mapping of the Mycoplasma pneumoniae chromosome. J Bacteriol 172, 4790-4797.
20. Ladefoged, S. A. & Christiansen, G. (1992). Physical and genetic mapping of the genomes of five Mycoplasma hominis strains by pulsed-field gel electrophoresis. J Bacteriol 174, 2199-2207.
21. Lauer, U. & Seemüller, E. (2000). Physical map of the chromosome of the apple proliferation phytoplasma. J Bacteriol 182, 1415-1418.
22. Lee, I. M., Davis, R. E. & Gundersen-Rindal, D. E. (2000). Phytoplasma: phytopathogenic mollicutes. Annu Rev Microbiol 54, 221-255.
23. Lee, I. M., Gundersen-Rindal, D. E., Davis, R. E., Bottner, K. D., Marcone, C. & Seemüller, E. (2004a). 'Candidatus Phytoplasma asteris', a novel phytoplasma taxon associated with aster yellows and related diseases. Int J Syst Evol Microbiol 54, 1037-1048.
24. Lee, I. M., Martini, M., Marcone, C. & Zhu, S. F. (2004b). Classification of phytoplasma strains in the elm yellows group (16SrV) and proposal of 'Candidatus Phytoplasma ulmi' for the phytoplasma associated with elm yellows. Int J Syst Evol Microbiol 54, 337-347.
25. Liefting, L. W. & Kirkpatrick, B. C. (2003). Cosmid cloning and sample sequencing of the genome of the uncultivable mollicute, Western X-disease phytoplasma, using DNA purified by pulsed-field gel electrophoresis. FEMS Microbiol Lett 221, 203-211.
26. Lorenz, K. H., Schneider, B., Ahrens, U. & Seemüller, E. (1995). Detection of the apple proliferation and pear decline phytoplasmas by PCR amplification of ribosomal and nonribosomal DNA. Phytopathology 85, 771-776.
27. Maixner, M., Ahrens, U. & Seemüller, E. (1995). Detection of the German grapevine yellows (Vergilbungskrankheit) MLO in grapevine, alternative hosts and a vector by a specific PCR procedure. Eur J Plant Pathol 101, 241-250.
28. Marcone, C. & Seemüller, E. (2001). A chromosome map of the European stone fruit yellows phytoplasma. Microbiology 147, 1213-1221.
29. Marcone, C., Neimark, H. C., Ragozzino, A., Lauer, U. & Seemüller, E. (1999). Chromosome sizes of phytoplasmas composing major phylogenetic groups and subgroups. Phytopathology 89, 805-810.
30. Neimark, H. & Kirkpatrick, B. C. (1993). Isolation and characterization of full-length chromosomes from non-culturable plant-pathogenic mycoplasma like organisms. Mol Microbiol 7, 21-28.
31. Oshima, K., Kakizawa, S., Nishigawa, H., Jung, H. Y., Wei, W., Suzuki, S., Arashida, R., Nakata, D., Miyata, S. & other authors (2004). Reductive evolution suggested from the complete genome sequence of a plant-pathogenic phytoplasma. Nat Genet 36, 27-29.
32. Padovan, A. C., Firrao, G., Schneider, B. & Gibb, K. S. (2000). Chromosome mapping of the sweet potato little leaf phytoplasma reveals genome heterogeneity within the phytoplasmas. Microbiology 146, 893-902.
33. Pyle, L. E. & Finch, L. R. (1988). A physical map of the genome of Mycoplasma mycoides subspecies mycoides Y with some functional loci. Nucleic Acids Res 16, 6027-6039.
34. Razin, S., Yogev, D. & Naot, Y. (1998). Molecular biology and pathogenicity of mycoplasmas. Microbiol Mol Biol Rev 62, 1094-1156.
35. Sambrook, J., Fritsch, E. F. & Maniatis, T. (1989). Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
36. Seemüller, E., Schneider, B., Mäurer, R., Ahrens, U., Daire, X., Kison, H., Lorenz, K. H., Firrao, G., Avinent, L. & other authors (1994). Phylogenetic classification of phytopathogenic mollicutes by sequence analysis of 16S ribosomal DNA. Int J Syst Bacteriol 44, 440-446.
37. Seemüller, E., Garnier, M. & Schneider, B. (2002). Mycoplasmas of plants and insects. In Molecular Biology and Pathogenicity of Mycoplasmas, pp. 91-115. Edited by S. R. R. Herrmann. New York: Kluwer Academic/Plenum Publishers.
38. Sirand-Pugnet, P., Citti, C., Barre, A. & Blanchard, A. (2007). Evolution of mollicutes: down a bumpy road with twists and turns. Res Microbiol 158, 754-766.
39. Smart, C. D., Schneider, B., Blomquist C. L., Guerra, L. J., Harrison, N. A., Ahrens, U., Lorenz, K. H., Seemüller, E. & Kirkpatrick, B. C. (1996). Phytoplasma-specific PCR primers based on sequences of the 16S-23S rRNA spacer region. Appl Environ Microbiol 62, 2988-2993.
40. Vasconcelos, A. T. R., Ferreira, H. B., Bizarro, C. V., Bonatto, S. L., Carvalho, M. O., Pinto, P. M., Almeida, D. F., Almeida, L. G. P., Almeida, P., & other authors (2005). Swine and poultry pathogens: the complete genome sequences of two strains of Mycoplasma hyopneumoniae and a strain of Mycoplasma synoviae. J Bacteriol 187, 5568-5577.
41. Weintraub, P. G. & Beanland, L. (2006). Insect vectors of phytoplasmas. Annu Rev Entomol 51, 91-111.
42. Weisburg, W. G., Tully, J. G., Rose, D. L., Petzel, J. P., Oyaizu, H., Yang, D., Mandelco, L., Sechrest, J., Lawrence, T. G. & other authors (1989). A phylogenetic analysis of the mycoplasmas: basis for their classification. J Bacteriol 171, 6455-6467.
43. Westberg, J., Persson, A., Holmberg, A., Goesmann, A., Lundeberg, J., Johansson, K. E., Pettersson, B. & Uhlen, M. (2004). The genome sequence of Mycoplasma mycoides subsp mycoides SC type strain PG1(T), the causative agent of contagious bovine pleuropneumonia (CBPP). Genome Res 14, 221-227.
44. Wise, K. S., Foecking, M. F., Roske, K., Lee, Y. J., Lee, Y. M., Madan, A. & Calcutt, M. J. (2006). Distinctive repertoire of contingency genes conferring mutation-based phase variation and combinatorial expression of surface lipoproteins in Mycoplasma capricolum subsp. capricolum of the Mycoplasma mycoides phylogenetic cluster. J Bacteriol 188, 4926-4941.
45. Ye, F., Laigret, F., Whitley, J. C., Citti, C., Finch, L. R., Carle, P., Renaudin, J. & Bové, J. M. (1992). A physical and genetic map of the Spiroplasma citri genome. Nucleic Acids Res 20, 1559-1565.