메뉴 건너뛰기




Volumn 4, Issue 6, 2008, Pages

A comparative computer simulation of dendritic morphology

Author keywords

[No Author keywords available]

Indexed keywords

FORESTRY; NEURONS;

EID: 46249097724     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000089     Document Type: Article
Times cited : (51)

References (45)
  • 1
    • 0742305149 scopus 로고    scopus 로고
    • Dendritic morphology, local circuitry, and intrinsic electrophysiology of principal neurons in the entorhinal cortex of macaque monkeys
    • Buckmaster PS, Alonso A, Canfield DR, Amaral DG (2004) Dendritic morphology, local circuitry, and intrinsic electrophysiology of principal neurons in the entorhinal cortex of macaque monkeys. J Comp Neurol 470(3): 317-29.
    • (2004) J Comp Neurol , vol.470 , Issue.3 , pp. 317-329
    • Buckmaster, P.S.1    Alonso, A.2    Canfield, D.R.3    Amaral, D.G.4
  • 2
    • 3242709755 scopus 로고    scopus 로고
    • Class-specific features of neuronal wiring
    • Stepanyants A, Tamas G, Chklovskii DB (2004) Class-specific features of neuronal wiring. Neuron 43(2): 251-9.
    • (2004) Neuron , vol.43 , Issue.2 , pp. 251-259
    • Stepanyants, A.1    Tamas, G.2    Chklovskii, D.B.3
  • 3
    • 0033667243 scopus 로고    scopus 로고
    • The role of single neurons in information processing
    • Koch C, Segev I (2000) The role of single neurons in information processing. Nat Neurosci 3 Suppl: 1171-7.
    • (2000) Nat Neurosci , vol.3 , Issue.SUPPL. , pp. 1171-1177
    • Koch, C.1    Segev, I.2
  • 4
    • 0038693438 scopus 로고    scopus 로고
    • Dendrites: Bug or feature?
    • Häusser M, Mel B (2003) Dendrites: bug or feature? Curr Opin Neurobiol 13(3): 372-83.
    • (2003) Curr Opin Neurobiol , vol.13 , Issue.3 , pp. 372-383
    • Häusser, M.1    Mel, B.2
  • 5
    • 0029741078 scopus 로고    scopus 로고
    • Influence of dendritic structure on firing pattern in model neocortical neurons
    • Mainen ZF, Sejnowski TJ (1996) Influence of dendritic structure on firing pattern in model neocortical neurons. Nature 382(6589): 363-6.
    • (1996) Nature , vol.382 , Issue.6589 , pp. 363-366
    • Mainen, Z.F.1    Sejnowski, T.J.2
  • 6
    • 0035128831 scopus 로고    scopus 로고
    • Propagation of action potentials in dendrites depends on dendritic morphology
    • Vetter P, Roth A, Hausser M (2001) Propagation of action potentials in dendrites depends on dendritic morphology. J Neurophysiol 85(2): 926-37.
    • (2001) J Neurophysiol , vol.85 , Issue.2 , pp. 926-937
    • Vetter, P.1    Roth, A.2    Hausser, M.3
  • 7
    • 33645592821 scopus 로고    scopus 로고
    • Models of neuronal outgrowth
    • Koslow SH, Subramaniam S, eds, Hoboken: Wiley Press. pp
    • Donohue DE, Ascoli GA (2005) Models of neuronal outgrowth. In: Koslow SH, Subramaniam S, eds. Databasing the Brain: From Data to Knowledge". Hoboken: Wiley Press. pp 303-323.
    • (2005) Databasing the Brain: From Data to Knowledge , pp. 303-323
    • Donohue, D.E.1    Ascoli, G.A.2
  • 8
    • 0036441201 scopus 로고    scopus 로고
    • Actin cytoskeleton regulation in neuronal morphogenesis and structural plasticity
    • Luo L (2002) Actin cytoskeleton regulation in neuronal morphogenesis and structural plasticity. Annu Rev Cell Dev Biol 18: 601-35.
    • (2002) Annu Rev Cell Dev Biol , vol.18 , pp. 601-635
    • Luo, L.1
  • 9
    • 0033565944 scopus 로고    scopus 로고
    • Subcellular localization of full-length and truncated Trk receptor isoforms in polarized neurons and epithelial cells
    • Kryl D, Yacoubian T, Haapasalo A, Castren E, Lo D, et al. (1999) Subcellular localization of full-length and truncated Trk receptor isoforms in polarized neurons and epithelial cells. J Neurosci 19(14): 5823-33.
    • (1999) J Neurosci , vol.19 , Issue.14 , pp. 5823-5833
    • Kryl, D.1    Yacoubian, T.2    Haapasalo, A.3    Castren, E.4    Lo, D.5
  • 10
    • 0037182576 scopus 로고    scopus 로고
    • Focal loss of actin bundles causes microtubule redistribution and growth cone turning
    • Zhou FQ, Waterman-Storer CM, Cohan CS (2002) Focal loss of actin bundles causes microtubule redistribution and growth cone turning. J Cell Biol 157(5): 839-49.
    • (2002) J Cell Biol , vol.157 , Issue.5 , pp. 839-849
    • Zhou, F.Q.1    Waterman-Storer, C.M.2    Cohan, C.S.3
  • 11
    • 0030883763 scopus 로고    scopus 로고
    • Natural variability in the number of dendritic segments: Model-based inferences about branching during neurite outgrowth
    • van Pelt J, Dityatev AE, Uylings HB (1997) Natural variability in the number of dendritic segments: model-based inferences about branching during neurite outgrowth. J Comp Neurol 387(3): 325-40.
    • (1997) J Comp Neurol , vol.387 , Issue.3 , pp. 325-340
    • van Pelt, J.1    Dityatev, A.E.2    Uylings, H.B.3
  • 12
    • 0037567639 scopus 로고    scopus 로고
    • Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern
    • Schaefer AT, Larkum ME, Sakmann B, Roth A (2003) Coincidence detection in pyramidal neurons is tuned by their dendritic branching pattern. J Neurophysiol 89(6): 3143-54.
    • (2003) J Neurophysiol , vol.89 , Issue.6 , pp. 3143-3154
    • Schaefer, A.T.1    Larkum, M.E.2    Sakmann, B.3    Roth, A.4
  • 13
    • 0026703682 scopus 로고
    • A parsimonious description of motoneuron dendritic morphology using computer simulation
    • Burke RE, Marks WB, Ulfhake B (1992) A parsimonious description of motoneuron dendritic morphology using computer simulation. J Neurosci 12(6): 2403-16.
    • (1992) J Neurosci , vol.12 , Issue.6 , pp. 2403-2416
    • Burke, R.E.1    Marks, W.B.2    Ulfhake, B.3
  • 14
    • 0028833288 scopus 로고
    • Mathematical modeling of dendritic growth in vitro
    • Uemura E, Carriquiry A, Kliemann W, Goodwin J (1995) Mathematical modeling of dendritic growth in vitro. Brain Res 671(2): 187-94.
    • (1995) Brain Res , vol.671 , Issue.2 , pp. 187-194
    • Uemura, E.1    Carriquiry, A.2    Kliemann, W.3    Goodwin, J.4
  • 15
    • 0033913163 scopus 로고    scopus 로고
    • L-Neuron: A modeling tool for the efficient generation and parsimonious description of dendritic morphology
    • Ascoli GA, Krichmar JL (2000) L-Neuron: a modeling tool for the efficient generation and parsimonious description of dendritic morphology. Neurocomputing 32-33: 1003-1011.
    • (2000) Neurocomputing , vol.32-33 , pp. 1003-1011
    • Ascoli, G.A.1    Krichmar, J.L.2
  • 16
    • 0043009701 scopus 로고    scopus 로고
    • Generation and description of neuronal morphology using L-Neuron: A case study
    • Ascoli GA, ed, Totowa: Humana Press. pp
    • Donohue DE, Scorcioni R, Ascoli GA (2002) Generation and description of neuronal morphology using L-Neuron: a case study. In: Ascoli GA, ed. Computational Neuroanatomy: Principles and Methods. Totowa: Humana Press. pp 49-70.
    • (2002) Computational Neuroanatomy: Principles and Methods , pp. 49-70
    • Donohue, D.E.1    Scorcioni, R.2    Ascoli, G.A.3
  • 17
    • 0035821871 scopus 로고    scopus 로고
    • A computational model of dendrite elongation and branching based on MAP2 phosphorylation
    • Hely TA, Graham B, Ooyen AV (2001) A computational model of dendrite elongation and branching based on MAP2 phosphorylation. J Theor Biol 210(3): 375-84.
    • (2001) J Theor Biol , vol.210 , Issue.3 , pp. 375-384
    • Hely, T.A.1    Graham, B.2    Ooyen, A.V.3
  • 18
    • 0028876978 scopus 로고
    • Computer simulation of nerve growth cone filopodial dynamics for visualization and analysis
    • Buettner HM (1995) Computer simulation of nerve growth cone filopodial dynamics for visualization and analysis. Cell Motil Cytoskeleton 32(3): 187-204.
    • (1995) Cell Motil Cytoskeleton , vol.32 , Issue.3 , pp. 187-204
    • Buettner, H.M.1
  • 19
    • 0028279380 scopus 로고
    • A model of neurite extension across regions of nonpermissive substrate: Simulations based on experimental measurement of growth cone motility and filopodial dynamics
    • Buettner HM, Pittman RN, Ivins JK (1994) A model of neurite extension across regions of nonpermissive substrate: simulations based on experimental measurement of growth cone motility and filopodial dynamics. Dev Biol 163(2): 407-22.
    • (1994) Dev Biol , vol.163 , Issue.2 , pp. 407-422
    • Buettner, H.M.1    Pittman, R.N.2    Ivins, J.K.3
  • 20
    • 0032695993 scopus 로고    scopus 로고
    • Theoretical analysis of gradient detection by growth cones
    • Goodhill GJ, Urbach JS (1999) Theoretical analysis of gradient detection by growth cones. J Neurobiol 41(2): 230-41.
    • (1999) J Neurobiol , vol.41 , Issue.2 , pp. 230-241
    • Goodhill, G.J.1    Urbach, J.S.2
  • 21
    • 0037438059 scopus 로고    scopus 로고
    • Statistical morphological analysis of hippocampal principal neurons indicates cell-specific repulsion of dendrites from their own cell
    • Samsonovich AV, Ascoli GA (2003) Statistical morphological analysis of hippocampal principal neurons indicates cell-specific repulsion of dendrites from their own cell. J Neurosci Res 71(2): 173-87.
    • (2003) J Neurosci Res , vol.71 , Issue.2 , pp. 173-187
    • Samsonovich, A.V.1    Ascoli, G.A.2
  • 22
    • 24144458998 scopus 로고    scopus 로고
    • Local diameter fully constrains dendritic size in basal but not apical trees of CA1 pyramidal neurons
    • Donohue DE, Ascoli GA (2005) Local diameter fully constrains dendritic size in basal but not apical trees of CA1 pyramidal neurons. J Comput Neurosci 19(2): 223-38.
    • (2005) J Comput Neurosci , vol.19 , Issue.2 , pp. 223-238
    • Donohue, D.E.1    Ascoli, G.A.2
  • 23
    • 0002707772 scopus 로고
    • Neuronal shape parameters and substructures as a basis of neuronal form
    • Schmitt F, ed, Cambridge: MIT Press. pp
    • Hillman DE (1979) Neuronal shape parameters and substructures as a basis of neuronal form. In: Schmitt F, ed. The Neurosciences, Fourth Study Program. Cambridge: MIT Press. pp 477-498.
    • (1979) The Neurosciences, Fourth Study Program , pp. 477-498
    • Hillman, D.E.1
  • 24
    • 16344392542 scopus 로고    scopus 로고
    • Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model
    • Samsonovich AV, Ascoli GA (2005) Statistical determinants of dendritic morphology in hippocampal pyramidal neurons: A hidden Markov model. Hippocampus 15(2): 166-83.
    • (2005) Hippocampus , vol.15 , Issue.2 , pp. 166-183
    • Samsonovich, A.V.1    Ascoli, G.A.2
  • 25
    • 0034749128 scopus 로고    scopus 로고
    • Computer generation and quantitative morphometric analysis of virtual neurons
    • Ascoli GA, Krichmar JL, Scorcioni R, Nasuto SJ, Senft SL (2001) Computer generation and quantitative morphometric analysis of virtual neurons. Anat Embryol 204(4): 283-301.
    • (2001) Anat Embryol , vol.204 , Issue.4 , pp. 283-301
    • Ascoli, G.A.1    Krichmar, J.L.2    Scorcioni, R.3    Nasuto, S.J.4    Senft, S.L.5
  • 26
    • 0031048886 scopus 로고    scopus 로고
    • Microtubules and axonal growth
    • Baas PW (1997) Microtubules and axonal growth. Curr Opin Cell Biol 9(1): 29-36.
    • (1997) Curr Opin Cell Biol , vol.9 , Issue.1 , pp. 29-36
    • Baas, P.W.1
  • 27
    • 0031893246 scopus 로고    scopus 로고
    • A role of microtubules during the formation of cell processes in neuronal and non-neuronal cells
    • Kobayashi N, Mundel P (1998) A role of microtubules during the formation of cell processes in neuronal and non-neuronal cells. Cell Tissue Res 291(2): 163-74.
    • (1998) Cell Tissue Res , vol.291 , Issue.2 , pp. 163-174
    • Kobayashi, N.1    Mundel, P.2
  • 28
    • 0033861159 scopus 로고    scopus 로고
    • Neurotrophins and the dynamic regulation of the neuronal cytoskeleton
    • Gallo G, Letourneau PC (2000) Neurotrophins and the dynamic regulation of the neuronal cytoskeleton. J Neurobiol 44(2): 159-73.
    • (2000) J Neurobiol , vol.44 , Issue.2 , pp. 159-173
    • Gallo, G.1    Letourneau, P.C.2
  • 29
    • 0034603030 scopus 로고    scopus 로고
    • Synaptic assembly of the brain in the absence of neurotransmitter secretion
    • Verhage M, Maia AS, Plomp JJ, Brussaard AB, Heeroma JH, et al. (2000) Synaptic assembly of the brain in the absence of neurotransmitter secretion. Science 287(5454): 864-9.
    • (2000) Science , vol.287 , Issue.5454 , pp. 864-869
    • Verhage, M.1    Maia, A.S.2    Plomp, J.J.3    Brussaard, A.B.4    Heeroma, J.H.5
  • 30
    • 0031260462 scopus 로고    scopus 로고
    • Regulated neurite tension as a mechanism for determination of neuronal arbor geometries in vivo. Curr Biol 1
    • Condron BG, Zinn K (1997) Regulated neurite tension as a mechanism for determination of neuronal arbor geometries in vivo. Curr Biol 1; 7(10): 813-6.
    • (1997) , vol.7 , Issue.10 , pp. 813-816
    • Condron, B.G.1    Zinn, K.2
  • 31
    • 0037071893 scopus 로고    scopus 로고
    • Calcium regulation of dendritic growth via CaM kinase IV and CREB-mediated transcription
    • Redmond L, Kashani AH, Ghosh A (2002) Calcium regulation of dendritic growth via CaM kinase IV and CREB-mediated transcription. Neuron 34(6): 999-1010.
    • (2002) Neuron , vol.34 , Issue.6 , pp. 999-1010
    • Redmond, L.1    Kashani, A.H.2    Ghosh, A.3
  • 32
    • 0031879130 scopus 로고    scopus 로고
    • Growth of pyramidal, but not non-pyramidal, dendrites in long-term organotypic explants of neonatal rat neocortex chronically exposed to neurotrophin-3
    • Baker RE, Dijkhuizen PA, Van Pelt J, Verhaagen J (1998) Growth of pyramidal, but not non-pyramidal, dendrites in long-term organotypic explants of neonatal rat neocortex chronically exposed to neurotrophin-3. Eur J Neurosci 10(3): 1037-44.
    • (1998) Eur J Neurosci , vol.10 , Issue.3 , pp. 1037-1044
    • Baker, R.E.1    Dijkhuizen, P.A.2    Van Pelt, J.3    Verhaagen, J.4
  • 33
    • 0030920912 scopus 로고    scopus 로고
    • Opposing roles for endogenous BDNF and NT-3 in regulating cortical dendritic growth
    • McAllister AK, Katz LC, Lo DC (1997) Opposing roles for endogenous BDNF and NT-3 in regulating cortical dendritic growth. Neuron 18(5): 767-78.
    • (1997) Neuron , vol.18 , Issue.5 , pp. 767-778
    • McAllister, A.K.1    Katz, L.C.2    Lo, D.C.3
  • 34
    • 0028858681 scopus 로고
    • Neurotrophins regulate dendritic growth in developing visual cortex
    • McAllister AK, Lo DC, Katz LC (1995) Neurotrophins regulate dendritic growth in developing visual cortex. Neuron 15(4): 791-803.
    • (1995) Neuron , vol.15 , Issue.4 , pp. 791-803
    • McAllister, A.K.1    Lo, D.C.2    Katz, L.C.3
  • 35
    • 0028207931 scopus 로고
    • Regulation of neurotrophin receptors during the maturation of the mammalian visual system
    • Allendoerfer KL, Cabelli RJ, Escandon E, Kaplan DR, Nikolics K, et al. (1994) Regulation of neurotrophin receptors during the maturation of the mammalian visual system. J Neurosci 14(3 Pt 2): 1795-811.
    • (1994) J Neurosci , vol.14 , Issue.3 PART 2 , pp. 1795-1811
    • Allendoerfer, K.L.1    Cabelli, R.J.2    Escandon, E.3    Kaplan, D.R.4    Nikolics, K.5
  • 36
    • 0029845074 scopus 로고    scopus 로고
    • Changing patterns of expression and subcellular localization of TrkB in the developing visual system
    • Cabelli RJ, Allendoerfer KL, Radeke MJ, Welcher AA, Feinstein SC, Shatz CJ (1996) Changing patterns of expression and subcellular localization of TrkB in the developing visual system. J Neurosci 16(24): 7965-80.
    • (1996) J Neurosci , vol.16 , Issue.24 , pp. 7965-7980
    • Cabelli, R.J.1    Allendoerfer, K.L.2    Radeke, M.J.3    Welcher, A.A.4    Feinstein, S.C.5    Shatz, C.J.6
  • 37
    • 3342967633 scopus 로고    scopus 로고
    • Brain-derived neurotrophic factor mRNA and protein are targeted to discrete dendritic laminas by events that trigger epileptogenesis
    • Tongiorgi E, Armellin M, Giulianini PG, Bregola G, Zucchini S, et al. (2004) Brain-derived neurotrophic factor mRNA and protein are targeted to discrete dendritic laminas by events that trigger epileptogenesis. J Neurosci 24(30): 6842-52.
    • (2004) J Neurosci , vol.24 , Issue.30 , pp. 6842-6852
    • Tongiorgi, E.1    Armellin, M.2    Giulianini, P.G.3    Bregola, G.4    Zucchini, S.5
  • 38
    • 33750950147 scopus 로고    scopus 로고
    • The dynamic distribution of TrkB receptors before, during, and after synapse formation between cortical neurons
    • Gomes RA, Hampton C, El-Sabeawy F, Sabo SL, McAllister AK (2006) The dynamic distribution of TrkB receptors before, during, and after synapse formation between cortical neurons. J Neurosci 26(44): 11487-500.
    • (2006) J Neurosci , vol.26 , Issue.44 , pp. 11487-11500
    • Gomes, R.A.1    Hampton, C.2    El-Sabeawy, F.3    Sabo, S.L.4    McAllister, A.K.5
  • 39
    • 0031026740 scopus 로고    scopus 로고
    • Cocultured, but not isolated, cortical explants display normal dendritic development: A long-term quantitative study
    • Baker RE, Van Pelt J (1997) Cocultured, but not isolated, cortical explants display normal dendritic development: a long-term quantitative study. Brain Res Dev Brain Res. 98(1): 21-9.
    • (1997) Brain Res Dev Brain Res , vol.98 , Issue.1 , pp. 21-29
    • Baker, R.E.1    Van Pelt, J.2
  • 40
    • 31944436898 scopus 로고    scopus 로고
    • Morphological homeostasis in cortical dendrites
    • Samsonovich AV, Ascoli GA (2006) Morphological homeostasis in cortical dendrites. Proc Natl Acad Sci 103(5): 1569-74.
    • (2006) Proc Natl Acad Sci , vol.103 , Issue.5 , pp. 1569-1574
    • Samsonovich, A.V.1    Ascoli, G.A.2
  • 41
    • 33645278642 scopus 로고    scopus 로고
    • Mobilizing the base of neuroscience data: The case of neuronal morphologies
    • Ascoli GA (2006) Mobilizing the base of neuroscience data: the case of neuronal morphologies. Nat Rev Neurosci 7(4): 318-24.
    • (2006) Nat Rev Neurosci , vol.7 , Issue.4 , pp. 318-324
    • Ascoli, G.A.1
  • 42
    • 34548458204 scopus 로고    scopus 로고
    • NeuroMorpho.Org: A central resource for neuronal morphologies
    • Ascoli GA, Donohue DE, Halavi M (2007) NeuroMorpho.Org: a central resource for neuronal morphologies. J Neurosci 27(35): 9247-51.
    • (2007) J Neurosci , vol.27 , Issue.35 , pp. 9247-9251
    • Ascoli, G.A.1    Donohue, D.E.2    Halavi, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.