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Volumn 24, Issue 13, 2008, Pages

Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

EID: 46249089452     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn143     Document Type: Article
Times cited : (17)

References (24)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • Aebersold,R. and Mann,M. (2003) Mass spectrometry-based proteomics. Nature, 422, 198-207.
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 0000211514 scopus 로고    scopus 로고
    • Robust full Bayesian learning for radial basis networks
    • Andrieu,C. et al. (2001) Robust full Bayesian learning for radial basis networks. Neural Comput., 13, 2359-2407.
    • (2001) Neural Comput , vol.13 , pp. 2359-2407
    • Andrieu, C.1
  • 3
    • 0141855279 scopus 로고    scopus 로고
    • A comprehensive approach to the analysis of matrix assisted laser desorption/ionization-time of flight proteomics spectra from serum samples
    • Baggerly,K. et al. (2003) A comprehensive approach to the analysis of matrix assisted laser desorption/ionization-time of flight proteomics spectra from serum samples. Proteomics, 3, 1667-1672.
    • (2003) Proteomics , vol.3 , pp. 1667-1672
    • Baggerly, K.1
  • 4
    • 1842559788 scopus 로고    scopus 로고
    • Reproducibility of SELDI-TOF protein patterns in serum: Comparing data sets from different experiments
    • Baggerly,K.A. et al. (2004) Reproducibility of SELDI-TOF protein patterns in serum: Comparing data sets from different experiments. Bioinformatics, 20, 777-785.
    • (2004) Bioinformatics , vol.20 , pp. 777-785
    • Baggerly, K.A.1
  • 5
    • 18744410496 scopus 로고    scopus 로고
    • Understanding the characteristics of mass spectrometry data through the use of simulation
    • Coombes,K.R. et al. (2005a) Understanding the characteristics of mass spectrometry data through the use of simulation. Cancer Inform. 1, 41-52.
    • (2005) Cancer Inform , vol.1 , pp. 41-52
    • Coombes, K.R.1
  • 6
    • 18744411077 scopus 로고    scopus 로고
    • Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform
    • Coombes,K.R. et al. (2005b) Improved peak detection and quantification of mass spectrometry data acquired from surface-enhanced laser desorption and ionization by denoising spectra with the undecimated discrete wavelet transform. Proteomics, 5, 4107-4117.
    • (2005) Proteomics , vol.5 , pp. 4107-4117
    • Coombes, K.R.1
  • 7
    • 33749646152 scopus 로고    scopus 로고
    • Peak quantification in surface-enhanced laser desorption/ionization by using mixture models
    • Dijkstra,M. et al. (2006) Peak quantification in surface-enhanced laser desorption/ionization by using mixture models. Proteomics, 6, 5106-5116.
    • (2006) Proteomics , vol.6 , pp. 5106-5116
    • Dijkstra, M.1
  • 8
    • 33846849377 scopus 로고    scopus 로고
    • SELDI-TOF mass spectra: A view on sources of variation
    • Dijkstra,M. et al. (2007) SELDI-TOF mass spectra: A view on sources of variation. J. Chromatogr. B, 847, 12-23.
    • (2007) J. Chromatogr. B , vol.847 , pp. 12-23
    • Dijkstra, M.1
  • 9
    • 33748659203 scopus 로고    scopus 로고
    • Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching
    • Du,P. et al. (2006) Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. Bioinformatics, 22, 2059-2065.
    • (2006) Bioinformatics , vol.22 , pp. 2059-2065
    • Du, P.1
  • 10
    • 0036130648 scopus 로고    scopus 로고
    • ProteinChip clinical proteomics: Computational challenges and solutions
    • Fung,E.T. and Enderwick,C. (2002) ProteinChip clinical proteomics: computational challenges and solutions. BioTechniques, 81 (Suppl. 34), 40-41.
    • (2002) BioTechniques , vol.81 , Issue.SUPPL. 34 , pp. 40-41
    • Fung, E.T.1    Enderwick, C.2
  • 11
    • 77956889087 scopus 로고
    • Reversible jump Markov chain Monte Carlo computation and Bayesian model determination
    • Green,P.J. (1995) Reversible jump Markov chain Monte Carlo computation and Bayesian model determination. Biometrika, 82, 711-732.
    • (1995) Biometrika , vol.82 , pp. 711-732
    • Green, P.J.1
  • 12
    • 33646252011 scopus 로고    scopus 로고
    • Processing and classification of protein mass spectra
    • Hilario,M. et al. (2006) Processing and classification of protein mass spectra. Mass Spectrum. Rev., 25, 409-449.
    • (2006) Mass Spectrum. Rev , vol.25 , pp. 409-449
    • Hilario, M.1
  • 13
    • 0036079692 scopus 로고    scopus 로고
    • The SELDI-TOF MS approach to proteomics: Protein profiling and biomarker identification
    • Issaq,H.J. et al. (2002) The SELDI-TOF MS approach to proteomics: protein profiling and biomarker identification. Biochem. Biophys. Res. Commun., 292, 587-592.
    • (2002) Biochem. Biophys. Res. Commun , vol.292 , pp. 587-592
    • Issaq, H.J.1
  • 14
    • 10744223905 scopus 로고    scopus 로고
    • Serum diagnosis of pancreatic adenocarcinoma using surface-enhanced laser desorption and ionization mass spectrometry
    • Koopmann,J. et al. (2004) Serum diagnosis of pancreatic adenocarcinoma using surface-enhanced laser desorption and ionization mass spectrometry. Clin. Cancer Res., 10, 860-868.
    • (2004) Clin. Cancer Res , vol.10 , pp. 860-868
    • Koopmann, J.1
  • 15
    • 19944362482 scopus 로고    scopus 로고
    • Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-fligbt mass spectrometric records for serum peptides using time series analysis techniques
    • Malyarenko,D.I. et al. (2005) Enhancement of sensitivity and resolution of surface-enhanced laser desorption/ionization time-of-fligbt mass spectrometric records for serum peptides using time series analysis techniques. Clin. Chem., 51, 65-74.
    • (2005) Clin. Chem , vol.51 , pp. 65-74
    • Malyarenko, D.I.1
  • 16
    • 18744384734 scopus 로고    scopus 로고
    • Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum
    • Morris,J. et al. (2005) Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum. Bioinformatics, 21, 1764-1775.
    • (2005) Bioinformatics , vol.21 , pp. 1764-1775
    • Morris, J.1
  • 17
    • 35748977591 scopus 로고    scopus 로고
    • Improved model-based, platform-independent feature extraction for mass spectrometry
    • Noy,K. and Fasulo,D. (2007) Improved model-based, platform-independent feature extraction for mass spectrometry. Bioinformatics, 23 2528-2535.
    • (2007) Bioinformatics , vol.23 , pp. 2528-2535
    • Noy, K.1    Fasulo, D.2
  • 18
    • 33745228932 scopus 로고    scopus 로고
    • Multiscale processing of mass spectrometry data
    • Randolph,T.W. and Yasui,Y. (2006) Multiscale processing of mass spectrometry data. Biometrics, 62, 589-597.
    • (2006) Biometrics , vol.62 , pp. 589-597
    • Randolph, T.W.1    Yasui, Y.2
  • 19
    • 0347181849 scopus 로고    scopus 로고
    • A data review and re-assessment of ovarian cancer serum proteomic profiling
    • Sorace,J.M. and Zhan,M. (2003) A data review and re-assessment of ovarian cancer serum proteomic profiling. BMC Bioinform., 4, 24.
    • (2003) BMC Bioinform , vol.4 , pp. 24
    • Sorace, J.M.1    Zhan, M.2
  • 20
    • 33745599617 scopus 로고    scopus 로고
    • Finding regions of significance in SELDI measurements for identifying protein biomarkers
    • Tan,C.S. et al. (2006) Finding regions of significance in SELDI measurements for identifying protein biomarkers. Bioinformatics, 22, 1515-1523.
    • (2006) Bioinformatics , vol.22 , pp. 1515-1523
    • Tan, C.S.1
  • 21
    • 0032232235 scopus 로고    scopus 로고
    • Resolution and mass accuracy in matrix-assisted laser desorption ionization- time-of-flight
    • Vestal,M. and Juhasz,P. (1998) Resolution and mass accuracy in matrix-assisted laser desorption ionization- time-of-flight. J. Am. Soc. Mass Spectrum., 9, 892-911.
    • (1998) J. Am. Soc. Mass Spectrum , vol.9 , pp. 892-911
    • Vestal, M.1    Juhasz, P.2
  • 22
    • 29044442223 scopus 로고    scopus 로고
    • Protein quantification by SELDI-TOF-MS-based ProteinChip system
    • Vorderwulbecke,S. et al. (2005) Protein quantification by SELDI-TOF-MS-based ProteinChip system. Nat. Methods, 2, 393-395.
    • (2005) Nat. Methods , vol.2 , pp. 393-395
    • Vorderwulbecke, S.1
  • 23
    • 33645680702 scopus 로고    scopus 로고
    • Feature extraction in the analysis of proteomic mass spectra
    • Wang,X. et al. (2006) Feature extraction in the analysis of proteomic mass spectra. Proteomics, 6, 2095-2100.
    • (2006) Proteomics , vol.6 , pp. 2095-2100
    • Wang, X.1
  • 24
    • 0346101457 scopus 로고    scopus 로고
    • An automated peak identification/ calibration procedure for high-dimensional protein measures from mass spectrometers
    • Yasui,Y. et al. (2003) An automated peak identification/ calibration procedure for high-dimensional protein measures from mass spectrometers. J. Biomed. Biotechnol., 4, 242-248.
    • (2003) J. Biomed. Biotechnol , vol.4 , pp. 242-248
    • Yasui, Y.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.