Feature extraction in the analysis of proteomic mass spectra

Proteomics

Volumn 6, Issue 7, 2006, Pages 2095-2100

  Wang, Xuena ^a   Zhu, Wei ^a,d   Pradhan, Kith ^a   Ji, Chen ^a   Ma, Yeming ^a,b   Semmes, Oliver John ^c   Glimm, James ^a   Mitchell, Joseph ^a  

^a STONY BROOK UNIVERSITY   (United States)

^b NATIONAL INSTITUTE ON ALCOHOL ABUSE AND ALCOHOLISM   (United States)

^c EASTERN VIRGINIA MEDICAL SCHOOL   (United States)

^d Stony Brook University   (United States)

Author keywords

Feature extraction; Mass spectrometry; Noise filtration; Peak alignment; Peak calibration

Indexed keywords

BIOLOGICAL MARKER;

ACCURACY; ANALYTIC METHOD; ARTICLE; CALIBRATION; EXTRACTION; HEAD AND NECK CANCER; MASS SPECTROMETRY; PRIORITY JOURNAL; PROTEOMICS; SPECTRAL SENSITIVITY;

CALIBRATION; COMPUTATIONAL BIOLOGY; HEAD AND NECK NEOPLASMS; HUMANS; MASS SPECTROMETRY; MODELS, CHEMICAL; MODELS, STATISTICAL; PROTEINS; PROTEOMICS; TUMOR MARKERS, BIOLOGICAL;

EID: 33645680702     PISSN: 16159853     EISSN: 16159861     Source Type: Journal    
DOI: 10.1002/pmic.200500459     Document Type: Article

References (18)

1. Wadsworth, J. T., Somers, K. D., Cazares, L. H., Malik, G. et al., Clin. Cancer Res. 2004, 10, 1625-1632.
2. Cooks, R. G., Busch, K. L., Glish, G. L., Science, New Series 1983, 222, 273-278, 289-291.
3. Iden, C. R., Q. Rev Biol. 1996, 71, 401.
4. Miranker, A. D., Proc. Natl. Acad. Sci. USA 2000, 97, 14025-14027.
5. Adam, B. L., Vlahou, A., Semmes, O. J., Wright, G. L. Jr, Proteomics 2001, 1, 1264-1270.
6. Alessandro, R., Belluco, C., Kohn, E. C., Clin. Colorectal Cancer 2005, 4, 396-402.
7. Chen, J., Rocken, C., Malfertheiner, P., Ebert, M. P., Dig. Dis. 2004, 22, 380-385.
8. Drake, R. R., Cazare, L. H., Semmes, O. J., Wedsworth, J. T., Expert Rev. Mol. Diagn. 2005, 5, 93-100.
9. James, P., Quadroni, M., Carafoli, E., Gonnet, G., Biochem. Biophys. Res. Commun. 1993, 195, 58-64.
10. Petricoin, E. F. III, Ardekani, A. M., Hitt, B. A., Levine, P. J. et al., Lancet 2002, 359, 572-577.
11. Patricoin, E. F. III, Ornstein, D. K., Paweletz, C. P., J. Natl. Cancer Inst. 2002, 94, 1576-1578.
12. Zhu, W., Wang, X., Ma, Y., Rao, M. et al., PNAS 2003, 100, 14666-14671.
13. Horn, D. M., Zubarev, R. A., McLafferty, F. W., J. Am. Soc. Mass Spectrom. 2000, 11, 320-332.
14. Yasui, Y., Mclerran, D., Adam, B. L., Winget, M. et al., J. Biomed. Biotechnol. 2003, 4, 242-248.
15. Yasui, Y., Pepe, M., Thompson, M. L., Adam, B. L. et al., Biostatistics 2003, 4, 449-463.
16. Morris, J. S., Coombes, K. R., Koomen, J., Baggerly, K. A. et al., Bioinformatics 2005, 21, 1764-1775.
17. Cleveland, W. S., J. Am. Stat. Assoc. 1979, 74, 829-836.
18. Jarvis, R. A., Inform. Process. Lett. 1973, 2, 18-21.