Review of molecular modification techniques for improved detection of biomolecules by mass spectrometry

Analytica Chimica Acta

Volumn 623, Issue 1, 2008, Pages 1-10

  Honda, Aki ^a,b   Suzuki, Yoshio ^c   Suzuki, Koji ^a,b  

^a KEIO UNIVERSITY   (Japan)

^b JAPAN SCIENCE AND TECHNOLOGY AGENCY   (Japan)

^c NATIONAL INSTITUTE OF ADVANCED INDUSTRIAL SCIENCE AND TECHNOLOGY AIST   (Japan)

Author keywords

Biomolecules; Chemical modification; Mass probe; Mass spectrometry

Indexed keywords

BIOCHEMISTRY; BIOMOLECULES; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; MOLECULAR BIOLOGY; MOLECULES; SPECTROMETERS; SPECTROMETRY; SPECTRUM ANALYSIS;

CHEMICAL MODIFICATION TECHNIQUES; CHEMICAL PROBING; DETECTION OF BIOMOLECULES; ELSEVIER (CO); LARGE MOLECULES; MOLECULAR MODIFICATIONS; SOFT IONIZATION;

CHEMICAL MODIFICATION;

CARBONYL DERIVATIVE; CHEMICAL COMPOUND; DEOXYRIBONUCLEOTIDE; ESTER DERIVATIVE; METAL ION; PEPTIDE NUCLEIC ACID; PROTEIN; REAGENT; STABLE ISOTOPE;

CHEMICAL MODIFICATION; CHEMICAL STRUCTURE; COLLISIONALLY ACTIVATED DISSOCIATION; DERIVATIZATION; DIFFERENTIAL DISPLAY; DNA DETERMINATION; ELECTROSPRAY MASS SPECTROMETRY; ISOTOPE LABELING; MASS SPECTROMETRY; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR PROBE; MOLECULAR WEIGHT; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; PROTEIN DETERMINATION; PROTEIN ISOLATION; PROTEIN STRUCTURE; PROTEIN SYNTHESIS; REVIEW; SINGLE NUCLEOTIDE POLYMORPHISM; STRUCTURE ANALYSIS; TWO DIMENSIONAL ELECTROPHORESIS; ULTRAVIOLET IRRADIATION;

DNA; IMMUNOASSAY; ISOTOPE LABELING; MASS SPECTROMETRY; PROTEINS;

EID: 46149120298     PISSN: 00032670     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.aca.2008.05.064     Document Type: Review

References (61)

1. Yamashita M., and Fenn J.B. J. Phys. Chem. 88 (1984) 4451
2. Whitehouse C.M., Dreyer R.N., Yamashita M., and Fenn J.B. Anal. Chem. 57 (1985) 675
3. Karas M., Bachmann D., and Hillenkamp F. Anal. Chem. 57 (1985) 2935
4. Tanaka K., Waki H., Ido Y., Akita S., Yoshida Y., Yoshida T., and Matsuo T. Rapid Commun. Mass Spectrom. 2 (1988) 151
5. Tanaka K., Ido Y., Akita S., Yoshida Y., and Yoshida T. Proceedings of the Second Japan-China Joint Symposium on Mass Spectrometer. Kyoto, Japan (1987)
6. Neubauer G., King A., Rappsilber J., Calvio C., Watson M., Ajuh P., Sleeman J., Lamond A., and Mann M. Nat. Genet. 20 (1998) 46
7. Wigge P.A., Jensen O.N., Holmes S., Soues S., Mann M., and Kilmartin J.V. J. Cell Biol. 141 (1998) 967
8. Rout M.P., Aitchison J.D., Suprapto A., Hjertaas K., Zhao Y., and Chait B.T. J. Cell Biol. 148 (2000) 635
9. Han D.K., Eng J., Zhou H., and Aebersold R. Nat. Biotechnol. 19 (2001) 946
10. Gygi S.P., Rist B., Gerber S.A., Turecek F., Gelb M.H., and Aebersold R. Nat. Biotechnol. 17 (1999) 994
11. Ong S.E., Kratchmarova I., and Mann M. J. Proteome Res. 2 (2003) 173
12. Martinovic S., Veenstra T.D., Anderson G.A., Pasa-Tolic L., and Smith R.D. J. Mass Spectrom. 37 (2002) 99
13. Ibarrola N., Molina H., Iwahori A., and Pandey A. J. Biol. Chem. 279 (2004) 15805
14. Ong S.E., Blagoev B., Kratchmarova I., Kristensen D.B., Steen H., Pandey A., and Mann M. Mol. Cell Proteomics 1 (2002) 376
15. Ross P.L., Huang Y.N., Marchese J.N., Williamson B., Parker K., Hattan S., Khainovski N., Pillai S., Dey S., Daniels S., Purkayastha S., Juhasz P., Martin S., Bartlet-Jones M., He F., Jacobson A., and Pappin D.J. Mol. Cell. Proteomics 3 (2004) 1154
16. Choe L., D'Ascenzo M., Relkin N.R., Pappin D., Ross P., Williamson B., Guertin S., Pribil P., and Lee K.H. Proteomics 7 (2007) 3651
17. Honda A., Hifumi H., Honma Y., Tanji N., Suzuki Y., and Suzuki K. Chem. Lett. 35 (2006) 290
18. Honda A., Suzuki Y., and Suzuki K. Chem. Rec. 6 (2006) 100
19. Haff L.A., and Smirnov I.P. Genome Res. 7 (1997) 378
20. Ross P., Hall L., Smirnov I., and Haff L. Nat. Biotechnol. 16 (1998) 1347
21. Braun A., Little D.P., and Koster H. Clin. Chem. 43 (1997) 1151
22. Little D.P., Braun A., Darnhofer-Demar B., and Koster H. Eur. J. Clin. Chem. Clin. Biochem. 35 (1997) 545
23. Sauer S., Lechner D., Berlin K., Plancon C., Heuermann A., Lehrach H., and Gut I.G. Nucleic Acids Res. 28 (2000) E100
24. Sauer S., Gelfand D.H., Boussicault F., Bauer K., Reichert F., and Gut I.G. Nucleic Acids Res. 30 (2002) e22
25. Suzuki Y., Tanji N., Ikeda C., Honda A., Ookubo K., Citterio D., and Suzuki K. Anal. Sci. 20 (2004) 475
26. Sugi K., Idzu G., and Hashimoto Y. J. Mass Spectrom. Soc. Jpn. 46 (1996) 57
27. Quirke J.M.E., Adams C.L., and Berkel G.J.V. Anal. Chem. 66 (1996) 1302
28. O'Farrell P.H. J. Biol. Chem. 250 (1975) 4007
29. Shevchenko A., Wilm M., Vorm O., and Mann M. Anal. Chem. 68 (1996) 850
30. Biemann K. Biomed. Environ. Mass Spectrom. 16 (1988) 99
31. Biemann K. Biochem. Soc. Trans. 17 (1989) 237
32. Spengler B. J. Mass Spectrom. 32 (1997) 1019
33. Gonnet F., Bouazza B., Millot G.A., Ziaei S., Garcia L., Butler-Browne G.S., Mouly V., Tortajada J., Danos O., and Svinartchouk F. Proteomics 8 (2008) 264
34. Rahman M.A., Kumar S.G., Kim S.W., Hwang H.J., Baek Y.M., Lee S.H., Hwang H.S., Shon Y.H., Nam K.S., and Yun J.W. Proteomics 8 (2008) 569
35. McDonald W.H., and Yates III J.R. Curr. Opin. Mol. Ther. 5 (2003) 302
36. Palmblad M., Bindschedler L.V., and Cramer R. Proteomics 7 (2007) 3462
37. Zhang R., Sioma C.S., Wang S., and Regnier F.E. Anal. Chem. 73 (2001) 5142
38. Zhang R., and Regnier F.E. J. Proteome Res. 1 (2002) 139
39. Zhang R., Sioma C.S., Thompson R.A., Xiong L., and Regnier F.E. Anal. Chem. 74 (2002) 3662
40. Borisov O.V., Goshe M.B., Conrads T.P., Rakov V.S., Veenstra T.D., and Smith R.D. Anal. Chem. 74 (2002) 2284
41. Wu K.J., Steding A., and Becker C.H. Rapid Commun. Mass Spectrom. 7 (1993) 142
42. Brookes A.J. Gene 234 (1999) 177
43. Nordhoff E., Luebbert C., Thiele G., Heiser V., and Lehrach H. Nucleic Acids Res. 28 (2000) E86
44. Fei Z., Ono T., and Smith L.M. Nucleic Acids Res. 26 (1998) 2827
45. Mauger F., Jaunay O., Chamblain V., Reichert F., Bauer K., Gut I.G., and Gelfand D.H. Nucleic Acids Res. 34 (2006) e18
46. Ross P.L., Lee K., and Belgrader P. Anal. Chem. 69 (1997) 4197
47. Bartlet-Jones M., Jeffery W.A., Hansen H.F., and Pappin D.J. Rapid Commun. Mass Spectrom. 8 (1994) 737
48. Gut I.G., and Beck S. Nucleic Acids Res. 23 (1995) 1367
49. Mano N., Oda Y., Yamada K., Asakawa N., and Katayama K. Anal. Biochem. 244 (1997) 291
50. Liu Z., Short J., Rose A., Ren S., Contel N., Grossman S., and Unger S. J. Pharm. Biomed. Anal. 26 (2001) 321
51. Gunawan S., Griswold M.P., and Kahn D.G. J. Chromatogr. A 914 (2001) 1
52. Wang R., Sweeney D., Gandy S.E., and Sisodia S.S. J. Biol. Chem. 271 (1996) 31894
53. Tang X., Sadeghi M., Olumee Z., Vertes A., Braatz J.A., McIlwain L.K., and Dreifuss P.A. Anal. Chem. 68 (1996) 3740
54. Kaplan J.H., Forbush III B., and Hoffman J.F. Biochemistry 17 (1978) 1929
55. Kawaguchi H., Sato Y., Okumura A., and Kyo M. e-Polymers 050 (2005)
56. Van Berkel G.J., McLuckey S.A., and Glish G.L. Anal. Chem. 63 (1991) 2064
57. Van Berkel G.J., McLuckey S.A., and Glish G.L. Anal. Chem. 64 (1992) 1586
58. Honda A., Suzuki Y., and Suzuki K. Bunseki 11 (2004) 643
59. Kasai H., and Nishimura S. Nucleic Acids Res. 12 (1984) 2137
60. Toyokuni S., Tanaka T., Hattori Y., Nishiyama Y., Yoshida A., Uchida K., Hiai H., Ochi H., and Osawa T. Lab. Invest. 76 (1997) 365
61. K. Suzuki, Y. Suzuki, A. Honda, Poster Session of Pittcon, Orland, Florida, USA 2005.