Identification of gene for rice (Oryza sativa) seed lipoxygenase-3 involved in the generation of stale flavor and development of SNP markers for lipoxygenase-3 deficiency

Breeding Science

Volumn 58, Issue 2, 2008, Pages 169-176

  Shirasawa, Kenta ^a,b   Takeuchi, Yoshinobu ^a   Ebitani, Takeshi ^c   Suzuki, Yasuhiro ^a  

^a NATIONAL INSTITUTE OF CROP SCIENCE   (Japan)

^b KAZUSA DNA RESEARCH INSTITUTE   (Japan)

^c Toyama Agricultural Research Center   (Japan)

Author keywords

DNA selection breeding; Grain storability; Lipoxygenase 3; Nonsense mutation; Rice

Indexed keywords

ORYZA SATIVA;

EID: 45849150722     PISSN: 13447610     EISSN: 13473735     Source Type: Journal    
DOI: 10.1270/jsbbs.58.169     Document Type: Article

References (50)

1. Doi, K., T. Izawa, T. Fuse, U. Yamanouchi, T. Kubo, Z. Shimatani, M.Yano and A. Yoshimura (2004) Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1. Genes Dev. 18: 926-936.
2. Feussner, I. and C. Wasternack (2002) The lipoxygenase pathway. Annu. Rev. Plant. Biol. 53: 275-297.
3. Gardner, H.W. (1988) Lipoxygenase pathway in cereals. Adv. Cereal Sci. Technol. 9: 161-215.
4. 2 population. Genetics 148: 479-494.
5. Hatanaka, A. (1993) The biogeneration of green odour by green leaves. Phytochemistry 34: 1201-1218.
6. Hayashi, K., N. Hashimoto, M. Daigen and I. Ashikawa (2004) Development of PCR-based SNP markers for rice blast resistance genes at the Piz locus. Theor. Appl. Genet. 108: 1212-1220.
7. Hornung, E., M. Walther, H. Kuhn and I. Feussner (1999) Conversion of cucumber linoleate 13-lipoxygenase to a 9-lipoxygenating species by site-directed mutagenesis. Proc. Natl. Acad. Sci. USA 96: 4192-4197.
8. Ida, S., Y. Masaki and Y. Morita (1983) The isolation of multiple forms and product specificity of rice lipoxygenase. Agric. Biol. Chem. 47: 637-641.
9. International Rice Genome Sequencing Project (2005) The map-based sequence of the rice genome. Nature 436: 793-800.
10. Ise, K., Y. Suzuki, J. Xiong, L. Dai, C. Ye, S. Kudo and M. Maekawa (2002) Germplasm lacking lipoxygenase-3 in a wide diversity of rice genetic resources in Yunnan, China. Jpn. J. Trop. Agric. 46: 33-38.
11. Kitamura, K. (1995) Genetic improvement of nutritional and food processing quality in soybean. Jpn. Agric. Res. Quarterly 29: 1-8.
12. Konieczny, A. and F.M. Ausubel (1993) A procedure for mapping Arabidopsis mutations using codominant ecotype-specific PCR-based markers. Plant J. 4: 403-410.
13. Konishi, S., T. Izawa, S.Y. Lin, K. Ebana, Y. Fukuta, T. Sasaki and M.Yano (2006) An SNP caused loss of seed shattering during rice domestication. Science 312: 1392-1396.
14. Kurata, N., Y. Nagamura, K. Yamamoto, Y. Harushima, N. Sue, J. Wu, B.A. Antonio, A. Shomura, T. Shimizu, S.Y. Lin et al. (1994) A 300 kilobase interval genetic map of rice including 883 expressed sequences. Nat. Genet. 8: 365-372.
15. McCouch, S.R., L. Teytelman, Y. Xu, K.B. Lobos, K. Clare, M. Walton, B. Fu, R. Maghirang, Z. Li, Y. Xing et al. (2002) Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.). DNA Res. 9: 199-207.
16. Minor, W., J. Steczko, J.T. Bolin, Z. Otwinowski and B. Axelrod (1993) Crystallographic determination of the active site iron and its ligands in soybean lipoxygenase L-1. Biochemistry 32: 6320-6323.
17. Mitsuda, H., F. Kawai and A. Yamamoto (1972) Under water and underground storage of cereal grain. Food Technol. 26: 50-56.
18. Mizuno, K., T. Iida, A. Takano, M. Yokoyama and T. Fujimura (2003) A new 9-lipoxygenase cDNA from developing rice seeds. Plant Cell Physiol. 44: 1168-1175.
19. Murray, M.G. and W.F. Thompson (1980) Rapid isolation of high molecular weight plant DNA. Nucleic Acids Res. 8: 4321-4325.
20. Nasu, S., J. Suzuki, R. Ohta, K. Hasegawa, R. Yui, N. Kitazawa, L. Monna and Y. Minobe (2002) Search for and analysis of single nucleotide polymorphisms (SNPs) in rice (Oryza sativa, Oryza rufipogon) and establishment of SNP markers. DNA Res. 9: 163-171.
21. Ohta, H., S. Ida, B. Mikami and Y. Morita (1986a) Purification and characterization of rice lipoxygenase component 3 from embryos. Agric. Biol. Chem. 50: 3165-3171.
22. Ohta, H., S. Ida, B. Mikami and Y. Morita (1986b) Changes in lipoxygenase components of rice seedlings during germination. Plant Cell Physiol. 27: 911-918.
23. Ohta, H., K. Shida, Y.L. Peng, I. Furusawa, J. Shishiyama, S. Aibara and Y. Morita (1991) A lipoxygenase pathway is activated in rice after infection with the rice blast fungus Magnaporthe grisea. Plant Physiol. 97: 94-98.
24. Ohta, H., Y. Shirano, K. Tanaka, Y. Morita and D. Shibata (1992) cDNA cloning of rice lipoxygenase L-2 and characterization using an active enzyme expressed from the cDNA in Escherichia coli. Eur. J. Biochem. 206: 331-336.
25. Peng, Y.L., Y. Shirano, H. Ohta, T. Hibino, K. Tanaka and D. Shibata (1994) A novel lipoxygenase from rice. Primary structure and specific expression upon incompatible infection with rice blast fungus. J. Biol. Chem. 269: 3755-3761.
26. Rosenfeld, J., J. Capdevielle, J.C. Guillemot and P. Ferrara (1992) In-gel digestion of proteins for internal sequence analysis after one- or two-dimensional gel electrophoresis. Anal. Biochem. 203: 173-179.
27. Sasaki, A., M. Ashikari, M. Ueguchi-Tanaka, H. Itoh, A. Nishimura, D.Swapan, K. Ishiyama, T. Saito, M. Kobayashi, G.S. Khush et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.
28. Schaffrath, U., F. Zabbai and R. Dudler (2000) Characterization of RCI-1, a chloroplastic rice lipoxygenase whose synthesis is induced by chemical plant resistance activators. Eur. J. Biochem. 267: 5935-5942.
29. Sharp, R.N. and L.K. Timme (1986) Effects of storage time, storage temperature, and packaging methods on shelf life of brown rice. Cereal Chem. 63: 247-251.
30. Shastry, B.S. and M.R.R. Rao (1975) Studies on lipoxygenase from rice bran. Cereal Chem. 52: 597-603.
31. Shin, M., S.H. Yoon, J.H. Rhee and T.W. Kwon (1986) Correlation between oxidative deterioration of unsaturated lipid and n-hexanal during storage of brown rice. J. Food Sci. 51: 460-463.
32. Shirasawa, K., S. Shiokai, M. Yamaguchi, S. Kishitani and T. Nishio (2006) Dot-blot-SNP analysis for practical plant breeding and cultivar identification in rice. Theor. Appl. Genet. 113: 147-155.
33. Shirasawa, K., H. Maeda, L. Monna, S. Kishitani and T. Nishio (2007) The number of genes having different alleles between rice cultivars estimated by SNP analysis. Theor. Appl. Genet. 115: 1067-1074.
34. Slade, A.J., S.I. Fuerstenberg, D. Loeffler, M.N. Steine and D. Facciotti (2005) A reverse genetic, nontransgenic approach to wheat crop improvement by TILLING. Nat. Biotechnol. 23: 75-81.
35. Sowbhagya, C.M. and K.R. Bhattacharya (1976) Lipid autoxidation in rice. J. Food Sci. 41: 1018-1023.
36. Suzuki, Y. (1994) Screening and mode of inheritance of a rice variety lacking lipoxygenase-3. Gamma Field Symp. 33: 51-62.
37. Suzuki, Y. (2001) Improvement of rice strage. Screenig of rice variety lacking lipoxygenase in mature seeds and utilization of lipoxygenase-null characters in rice storage. J. Agric. Sci. 56: 444-448.
38. Suzuki, Y., K.-I. Higo, K. Hagiwara, K. Ohtsubo, A. Kobayashi and Y.Nozu (1992) Production and use of monoclonal antibodies against rice embryo lipoxygenase-3. Biosci. Biotechnol. Biochem. 56: 678-679.
39. Suzuki, Y., T. Nagamine, A. Kobayashi and K. Ohtsubo (1993) Detection of a new rice variety lacking lipoxygenase-3 by monoclonal antibodies. Jpn. J. Breed. 43: 405-409.
40. Suzuki, Y., T. Nagamine and K. Okuno (1996a) Genetic analysis of a null-allele for lipoxygenase-3 in rice seeds. Euphytica 91: 99-101.
41. Suzuki, Y., T. Yasui, U. Matsukura and J. Terao (1996b) Oxidative stability of bran lipids from rice variety [Oryza sativa (L.)] lacking lipoxygenase-3 in seeds. J. Agric. Food Chem. 44: 3479-3483.
42. Suzuki, Y. and U. Matsukura (1997) Lipoxygenase activity in maturing and germinating rice seeds with and without lipoxygenase-3 in mature seeds. Plant Sci. 125: 119-126.
43. Suzuki, Y., K. Ise, C. Li, I. Honda, Y. Iwai and U. Matsukura (1999) Volatile components in stored rice [Oryza sativa (L.)] of varieties with and without lipoxygenase-3 in seeds. J. Agric. Food Chem. 47: 1119-1124.
44. Suzuki, Y., K. Ise and T. Nagamine (2000) Geographical variation of the gene, (Lox3(t)), causing lipoxygenase-3 deficiency in Asian rice varieties. Rice Genet. Newsl. 17: 13-14.
45. Takano, K. (1993) Advances in cereal chemistry and technology in Japan. Cereal Foods World 38: 695-698.
46. Tsugita, T., T. Ohta and H. Kato (1983) Cooking flavor and texture of rice stored under different conditions. Agric. Biol. Chem. 47: 543-549.
47. West, M.A., H. van Leeuwen, A. Kozik, D.J. Kliebenstein, R.W. Doerge, D.A. St Clair and R.W. Michelmore (2006) High-density haplotyping with microarray-based expression and single feature polymorphism markers in Arabidopsis. Genome Res. 16: 787-795.
48. Yamamoto, A., Y. Fujii, K. Yasumoto and H. Mitsuda (1980) Product specificity of rice germ lipoxygenase. Lipids 15: 1-5.
49. Yasumatsu, K. and S. Moritaka (1964) Fatty acid compositions of rice lipid and their changes during storage. Agric. Biol. Chem. 28: 257-264.
50. Zhou, Z., K. Robards, S. Helliwella and C. Blanchard (2002) Ageing of stored rice: Changes in chemical and physical attributes. J. Cereal Sci. 35: 65-78.