MGED standards: Work in progress

OMICS A Journal of Integrative Biology

Volumn 10, Issue 2, 2006, Pages 138-144

  Ball, Catherine A ^a   Brazma, Alvis ^b  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; BIOTECHNOLOGY; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; DATA BASE; DNA MICROARRAY; FUNCTIONAL GENOMICS; GENE EXPRESSION; GENOMICS; METABOLOMICS; PHARMACOGENOMICS; PRIORITY JOURNAL; PROTEOMICS; REVIEW; STANDARD;

ANIMALS; DATABASES, GENETIC; GENE EXPRESSION PROFILING; HUMANS; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS;

EID: 33748039756     PISSN: 15362310     EISSN: None     Source Type: Journal    
DOI: 10.1089/omi.2006.10.138     Document Type: Review

References (16)

1. BALL, C.A., et al. (2002). Standards for microarray data. Science 298, 539.
2. BALL, C.A., SHERLOCK, G., and BRAZMA, A. (2004). Funding high-throughput data sharing. Nat Biotechnol 22, 1179-1183.
3. BALL, C.A., et al. (2005). The Stanford Microarray Database accommodates additional microarray platforms and data formats. Nucleic Acids Res 33, D580-D582.
4. BARRETT, et al. (2005). NCBI GEO: mining millions of expression profiles-database and tools. Nucleic Acids Res 33, D562-D566.
5. BRAZMA, A., et al. (2000). One stop shop for microarray data. Nature 403, 699-700.
6. BRAZMA, A., et al. (2001). Minimum information about a microarray experiment (MIAME)-toward standards for microarray data. Nat Genet 29, 365-371.
7. BRAZMA, A., et al. (2003). ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucleic Acids Res 31, 68-71.
8. DERISI, et al. (1998). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278, 680-686.
9. IKEO, et al. (2003). CIBEX: center for information biology gene expression database. C R Biol 326, 1079-1082.
10. NATURE. (2002). Editorial. Microarray standards at last. Nature 419, 323.
11. PARKINSON, et al. (2005). ArrayExpress-a public repository for microarray gene expression data at the EBI. Nucl Acids Res 33, D553-D555.
12. SANSONE, S.-A., ROCCA-SERRA, P., TONG, W., et al. (2006). A strategy capitalizing on synergies: the Reporting Structure for Biological Investigation (RSBI) working group. OMICS (this issue).
13. SARKANS, et al. (2005). The ArrayExpress gene expression database: a software engineering and implementation perspective. Bioinformatics 21, 1495-1501.
14. SCHENA, M., et al. (1996). Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 93, 10614-10619.
15. SPELLMAN, et al. (2002). Design and implementation of microarray gene expression markup language (MAGE-ML). Genome Biol 3, RESEARCH0046.
16. WHETZEL, P.L., PARKINSON, H., CAUSTON, H.C., et al. (2006). The MGED ontology: a resource for semantics-based description of microarray experiments. Bioinformatics 22, 866-873: doi:10.1093/bioinformatics/bt1005.