메뉴 건너뛰기




Volumn 253, Issue 2, 2008, Pages 349-354

Stochastic coherence in an oscillatory gene circuit model

Author keywords

Coherence resonance; Gene network; Oscillatory network; Stochastic process

Indexed keywords

GENE; NOISE; OSCILLATION; STOCHASTICITY;

EID: 45649083847     PISSN: 00225193     EISSN: 10958541     Source Type: Journal    
DOI: 10.1016/j.jtbi.2008.03.012     Document Type: Article
Times cited : (7)

References (37)
  • 1
    • 0034688220 scopus 로고    scopus 로고
    • Circadian clocks limited by noise
    • Barkai N., and Leibler S. Circadian clocks limited by noise. Nature 403 (2000) 267-268
    • (2000) Nature , vol.403 , pp. 267-268
    • Barkai, N.1    Leibler, S.2
  • 2
    • 12244277104 scopus 로고    scopus 로고
    • Modeling feedback loops of the mammalian circadian oscillator
    • Becker-Weimann S., Wolf J., Herzel H., and Kramer A. Modeling feedback loops of the mammalian circadian oscillator. Biophys. J. 87 (2004) 3023-3034
    • (2004) Biophys. J. , vol.87 , pp. 3023-3034
    • Becker-Weimann, S.1    Wolf, J.2    Herzel, H.3    Kramer, A.4
  • 5
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • Elowitz M.B., and Leibler S. A synthetic oscillatory network of transcriptional regulators. Nature 403 (2000) 335-338
    • (2000) Nature , vol.403 , pp. 335-338
    • Elowitz, M.B.1    Leibler, S.2
  • 6
    • 0037119587 scopus 로고    scopus 로고
    • Stochastic gene expression in a single cell
    • Elowitz M., Levine A., Siggia E., and Swain P. Stochastic gene expression in a single cell. Science 297 (2002) 1183-1186
    • (2002) Science , vol.297 , pp. 1183-1186
    • Elowitz, M.1    Levine, A.2    Siggia, E.3    Swain, P.4
  • 7
    • 0017030517 scopus 로고
    • A general method for numerically simulating the stochastic time evolution of coupled chemical reactions
    • Gillespie D.T. A general method for numerically simulating the stochastic time evolution of coupled chemical reactions. J. Comput. Phys. 22 (1976) 403-434
    • (1976) J. Comput. Phys. , vol.22 , pp. 403-434
    • Gillespie, D.T.1
  • 8
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie D.T. Exact stochastic simulation of coupled chemical reactions. J. Phys. Chem. 81 (1977) 2340-2361
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 9
    • 0034225547 scopus 로고    scopus 로고
    • The chemical Langevin equation
    • Gillespie D.T. The chemical Langevin equation. J. Chem. Phys. 113 (2000) 297-306
    • (2000) J. Chem. Phys. , vol.113 , pp. 297-306
    • Gillespie, D.T.1
  • 11
    • 1142291693 scopus 로고    scopus 로고
    • Coherence resonance in models of excitable neurons with noise in both the fast and slow dynamics
    • Hilborn R.C., and Erwin R.J. Coherence resonance in models of excitable neurons with noise in both the fast and slow dynamics. Phys. Lett. A 322 (2004) 19-24
    • (2004) Phys. Lett. A , vol.322 , pp. 19-24
    • Hilborn, R.C.1    Erwin, R.J.2
  • 12
    • 28844433105 scopus 로고    scopus 로고
    • Hilborn, R.C., Erwin, R.J., 2005. Fokker-Planck analysis of stochastic coherence in models of an excitable neuron with noise in both fast and slow dynamics. Phys. Rev. E 72, 031112-1-14.
    • Hilborn, R.C., Erwin, R.J., 2005. Fokker-Planck analysis of stochastic coherence in models of an excitable neuron with noise in both fast and slow dynamics. Phys. Rev. E 72, 031112-1-14.
  • 13
    • 0345790286 scopus 로고    scopus 로고
    • Internal noise stochastic resonance in a circadian clock system
    • Hou Z.-H., and Xin H.-W. Internal noise stochastic resonance in a circadian clock system. J. Chem. Phys. 119 (2003) 11508-11512
    • (2003) J. Chem. Phys. , vol.119 , pp. 11508-11512
    • Hou, Z.-H.1    Xin, H.-W.2
  • 14
    • 0035471044 scopus 로고    scopus 로고
    • Optimal sizes of ion channel clusters
    • Jung P., and Shuai J.-W. Optimal sizes of ion channel clusters. Europhys. Lett. 56 (2001) 29-35
    • (2001) Europhys. Lett. , vol.56 , pp. 29-35
    • Jung, P.1    Shuai, J.-W.2
  • 16
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: from theories to phenotypes
    • Kærn M., Elston T.C., Blake W.J., and Collins J.J. Stochasticity in gene expression: from theories to phenotypes. Nat. Rev. Genet. 6 (2005) 451-464
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 451-464
    • Kærn, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 17
    • 0035193294 scopus 로고    scopus 로고
    • Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations
    • Kepler T.B., and Elston T.C. Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations. Biophys. J. 81 (2001) 3116-3136
    • (2001) Biophys. J. , vol.81 , pp. 3116-3136
    • Kepler, T.B.1    Elston, T.C.2
  • 19
    • 0031029852 scopus 로고    scopus 로고
    • Stochastic mechanisms in gene expression
    • McAdams H.H., and Arkin A. Stochastic mechanisms in gene expression. Proc. Natl Acad. Sci. 94 (1997) 814-819
    • (1997) Proc. Natl Acad. Sci. , vol.94 , pp. 814-819
    • McAdams, H.H.1    Arkin, A.2
  • 21
    • 34547925618 scopus 로고    scopus 로고
    • Combinatorial promoter design for engineering noisy gene expression
    • Murphy K.F., Balázsi G., and Collins J.J. Combinatorial promoter design for engineering noisy gene expression. Proc. Natl Acad. Sci. 104 (2007) 12726-12731
    • (2007) Proc. Natl Acad. Sci. , vol.104 , pp. 12726-12731
    • Murphy, K.F.1    Balázsi, G.2    Collins, J.J.3
  • 22
    • 15544388848 scopus 로고    scopus 로고
    • Noise progagation in gene networks
    • Pedraza J.M., and van Oudenaarden A. Noise progagation in gene networks. Science 307 (2005) 1965-1969
    • (2005) Science , vol.307 , pp. 1965-1969
    • Pedraza, J.M.1    van Oudenaarden, A.2
  • 23
    • 0000912646 scopus 로고    scopus 로고
    • Coherence resonance in a noise-driven excitable system
    • Pikovsky A.S., and Kurths J. Coherence resonance in a noise-driven excitable system. Phys. Rev. Lett. 78 (1997) 775-778
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 775-778
    • Pikovsky, A.S.1    Kurths, J.2
  • 24
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: origins, consequences, and control
    • Raser J.M., and O'Shea E.K. Noise in gene expression: origins, consequences, and control. Science 309 (2005) 2010-2013
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    O'Shea, E.K.2
  • 25
    • 0035471045 scopus 로고    scopus 로고
    • Stochastic resonance as a collective property of ion channel assemblies
    • Schmid G., Goychuk I., and Hänggi P. Stochastic resonance as a collective property of ion channel assemblies. Europhys. Lett. 56 (2001) 22-28
    • (2001) Europhys. Lett. , vol.56 , pp. 22-28
    • Schmid, G.1    Goychuk, I.2    Hänggi, P.3
  • 26
    • 77949496157 scopus 로고    scopus 로고
    • Shuai, J.-W., Jung, P., 2002a. Optimal intracellular calcium signaling. Phys. Rev. Lett. 88, 068102-1-4.
    • Shuai, J.-W., Jung, P., 2002a. Optimal intracellular calcium signaling. Phys. Rev. Lett. 88, 068102-1-4.
  • 27
    • 0036280380 scopus 로고    scopus 로고
    • 2+ release of inositol 1,4,5-triphosphate receptor clusters
    • 2+ release of inositol 1,4,5-triphosphate receptor clusters. Biophys. J. 83 (2002) 87-97
    • (2002) Biophys. J. , vol.83 , pp. 87-97
    • Shuai, J.-W.1    Jung, P.2
  • 28
    • 27144444976 scopus 로고    scopus 로고
    • Shuai, J.-W., Jung, P., 2005. Entropically enhanced excitability in small systems. Phys. Rev. Lett. 95, 114501-1-4.
    • Shuai, J.-W., Jung, P., 2005. Entropically enhanced excitability in small systems. Phys. Rev. Lett. 95, 114501-1-4.
  • 29
    • 2342508415 scopus 로고    scopus 로고
    • Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations
    • Steuer R. Effects of stochasticity in models of the cell cycle: from quantized cycle times to noise-induced oscillations. J. Theor. Biol. 228 (2004) 293-301
    • (2004) J. Theor. Biol. , vol.228 , pp. 293-301
    • Steuer, R.1
  • 33
    • 10644228748 scopus 로고    scopus 로고
    • Internal noise stochastic resonance of synthetic gene network
    • Wang Z., Hou Z., and Xin H. Internal noise stochastic resonance of synthetic gene network. Chem. Phys. Lett. 401 (2005) 307-311
    • (2005) Chem. Phys. Lett. , vol.401 , pp. 307-311
    • Wang, Z.1    Hou, Z.2    Xin, H.3
  • 34
    • 34250749023 scopus 로고    scopus 로고
    • Optimal internal noise for mammalian circadian oscillator
    • Wang Z.-W., Hou Z.-H., and Xin H.-W. Optimal internal noise for mammalian circadian oscillator. Chin. J. Chem. Phys. 20 (2007) 119-125
    • (2007) Chin. J. Chem. Phys. , vol.20 , pp. 119-125
    • Wang, Z.-W.1    Hou, Z.-H.2    Xin, H.-W.3
  • 35
    • 4344682403 scopus 로고    scopus 로고
    • Zaikin, A., García-Ojalvo, J., Bascones, R., Ullner, E., Kurths, J., 2003. Doubly stochastic coherence via noise-induced symmetry in bistable neural models. Phys. Rev. Lett. 90, 030601-1-4.
    • Zaikin, A., García-Ojalvo, J., Bascones, R., Ullner, E., Kurths, J., 2003. Doubly stochastic coherence via noise-induced symmetry in bistable neural models. Phys. Rev. Lett. 90, 030601-1-4.
  • 36
    • 45849155994 scopus 로고    scopus 로고
    • Zeng, S., Jung, P., 2004. Mechanism for neuronal spike generation by small and large ion channel clusters. Phys. Rev. E 70, 011903-1-8.
    • Zeng, S., Jung, P., 2004. Mechanism for neuronal spike generation by small and large ion channel clusters. Phys. Rev. E 70, 011903-1-8.
  • 37
    • 3442901378 scopus 로고    scopus 로고
    • System-size biresonance for intracellular calcium signalling
    • Zhang J., Hou Z., and Xin H. System-size biresonance for intracellular calcium signalling. Chem. Phys. Chem. 5 (2004) 1041-1045
    • (2004) Chem. Phys. Chem. , vol.5 , pp. 1041-1045
    • Zhang, J.1    Hou, Z.2    Xin, H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.