-
1
-
-
3242672465
-
Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors
-
10.1093/hmg/ddh155 15138198
-
Paris P Andaya A Fridlyand J Jain A Weinberg V Kowbel D Brebner J Simko J Watson J Volik S Albertson D Pinkel D Alers J van der Kwast T Vissers K Schroder F Wildhagen M Febbo P Chinnaiyan A Pienta K Carroll P Rubin M Collins C van Dekken H Whole genome scanning identifies genotypes associated with recurrence and metastasis in prostate tumors Hum Mol Genet 2004 13 1303-1313 10.1093/hmg/ddh155 15138198
-
(2004)
Hum Mol Genet
, vol.13
, pp. 1303-1313
-
-
Paris, P.1
Andaya, A.2
Fridlyand, J.3
Jain, A.4
Weinberg, V.5
Kowbel, D.6
Brebner, J.7
Simko, J.8
Watson, J.9
Volik, S.10
Albertson, D.11
Pinkel, D.12
Alers, J.13
van der Kwast, T.14
Vissers, K.15
Schroder, F.16
Wildhagen, M.17
Febbo, P.18
Chinnaiyan, A.19
Pienta, K.20
Carroll, P.21
Rubin, M.22
Collins, C.23
van Dekken, H.24
more..
-
2
-
-
13844281018
-
Identification and validation of prognostic markers in breast cancer with the complementary use of array-CGH and tissue microarrays
-
10.1002/path.1694 15682439
-
Callagy G Pharoah P Chin S Sangan T Daigo Y Jackson L Caldas C Identification and validation of prognostic markers in breast cancer with the complementary use of array-CGH and tissue microarrays J Pathol 2005 205 388-396 10.1002/path.1694 15682439
-
(2005)
J Pathol
, vol.205
, pp. 388-396
-
-
Callagy, G.1
Pharoah, P.2
Chin, S.3
Sangan, T.4
Daigo, Y.5
Jackson, L.6
Caldas, C.7
-
3
-
-
18544365155
-
Genomic alterations in primary gastric adenocarcinomas correlate with clinicopathological characteristics and survival
-
15623941
-
Weiss M Kuipers E Postma C Snijders A Pinkel D Meuwissen S Albertson D Meijer G Genomic alterations in primary gastric adenocarcinomas correlate with clinicopathological characteristics and survival Cell Oncol 2004 26 307-317 15623941
-
(2004)
Cell Oncol
, vol.26
, pp. 307-317
-
-
Weiss, M.1
Kuipers, E.2
Postma, C.3
Snijders, A.4
Pinkel, D.5
Meuwissen, S.6
Albertson, D.7
Meijer, G.8
-
4
-
-
0038724269
-
Transformation of follicular lymphoma to diffuse large cell lymphoma is associated with a heterogeneous set of DNA copy number and gene expression alterations
-
10.1182/blood-2002-07-2119 12406872
-
Martinez-Climent J Alizadeh A Segraves R Blesa D Rubio-Moscardo F Albertson D Garcia-Conde J Dyer M Levy R Pinkel D Lossos I Transformation of follicular lymphoma to diffuse large cell lymphoma is associated with a heterogeneous set of DNA copy number and gene expression alterations Blood 2003 101 3109-3117 10.1182/ blood-2002-07-2119 12406872
-
(2003)
Blood
, vol.101
, pp. 3109-3117
-
-
Martinez-Climent, J.1
Alizadeh, A.2
Segraves, R.3
Blesa, D.4
Rubio-Moscardo, F.5
Albertson, D.6
Garcia-Conde, J.7
Dyer, M.8
Levy, R.9
Pinkel, D.10
Lossos, I.11
-
5
-
-
21144446267
-
Mantle-cell lymphoma genotypes identified with CGH to BAC microarrays define a leukemic subgroup of disease and predict patient outcome
-
10.1182/blood-2004-10-3907 15718413
-
Rubio-Moscardo F Climent J Siebert R Piris M Martin-Subero J Nielander I Garcia-Conde J Dyer M Terol M Pinkel D Martinez-Climent J Mantle-cell lymphoma genotypes identified with CGH to BAC microarrays define a leukemic subgroup of disease and predict patient outcome Blood 2005 105 4445-4454 10.1182/blood-2004-10-3907 15718413
-
(2005)
Blood
, vol.105
, pp. 4445-4454
-
-
Rubio-Moscardo, F.1
Climent, J.2
Siebert, R.3
Piris, M.4
Martin-Subero, J.5
Nielander, I.6
Garcia-Conde, J.7
Dyer, M.8
Terol, M.9
Pinkel, D.10
Martinez-Climent, J.11
-
6
-
-
0026495364
-
Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors
-
10.1126/science.1359641 1359641
-
Kallioniemi A Kallioniemi O Sudar D Rutovitz D Gray J Waldman F Pinkel D Comparative genomic hybridization for molecular cytogenetic analysis of solid tumors Science 1992 258 818-821 10.1126/science.1359641 1359641
-
(1992)
Science
, vol.258
, pp. 818-821
-
-
Kallioniemi, A.1
Kallioniemi, O.2
Sudar, D.3
Rutovitz, D.4
Gray, J.5
Waldman, F.6
Pinkel, D.7
-
7
-
-
0031895154
-
DNA copy number amplifications in human neoplasms? A review of comparative genomic hybridization studies
-
9588877
-
Knuutila S Björkqvist AM Autio K Tarkkanen M Wolf M Monni O Szymanska J Larramendy M Tapper J Pere H El-Rifai W Hemmer S Wasenius VM Vidgren V Y YZ DNA copy number amplifications in human neoplasms? a review of comparative genomic hybridization studies Am J Pathol 1998 152 1107-1123 9588877
-
(1998)
Am J Pathol
, vol.152
, pp. 1107-1123
-
-
Knuutila, S.1
Björkqvist, A.M.2
Autio, K.3
Tarkkanen, M.4
Wolf, M.5
Monni, O.6
Szymanska, J.7
Larramendy, M.8
Tapper, J.9
Pere, H.10
El-Rifai, W.11
Hemmer, S.12
Wasenius, V.M.13
Vidgren, V.Y.Y.Z.14
-
8
-
-
0032887168
-
DNA copy number losses in human neoplasms
-
10487825
-
Knuutila S Autio K Björkqvist AM Aalto Y El-Rifai W Hemmer S Huhta T Kettunen E Kiuru-kuhlefelt S Larramendy M Lushnikova T Monni O Pere H Tapper J Tarkkanen M Varis A Wasenius VM Wolf M Zhu Y DNA copy number losses in human neoplasms Am J Pathol 1999 155 683-694 10487825
-
(1999)
Am J Pathol
, vol.155
, pp. 683-694
-
-
Knuutila, S.1
Autio, K.2
Björkqvist, A.M.3
Aalto, Y.4
El-Rifai, W.5
Hemmer, S.6
Huhta, T.7
Kettunen, E.8
Kiuru-kuhlefelt, S.9
Larramendy, M.10
Lushnikova, T.11
Monni, O.12
Pere, H.13
Tapper, J.14
Tarkkanen, M.15
Varis, A.16
Wasenius, V.M.17
Wolf, M.18
Zhu, Y.19
-
9
-
-
17344371740
-
High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays
-
10.1038/2524 9771718
-
Pinkel D Segraves R Sudar D Clark S Poole I Kowbel D Collins C Kuo W Chen C Zhai Y Dairkee S Ljung B Gray J Albertson D High resolution analysis of DNA copy number variation using comparative genomic hybridization to microarrays Nat Genet 1998 20 207-211 10.1038/2524 9771718
-
(1998)
Nat Genet
, vol.20
, pp. 207-211
-
-
Pinkel, D.1
Segraves, R.2
Sudar, D.3
Clark, S.4
Poole, I.5
Kowbel, D.6
Collins, C.7
Kuo, W.8
Chen, C.9
Zhai, Y.10
Dairkee, S.11
Ljung, B.12
Gray, J.13
Albertson, D.14
-
10
-
-
0032823523
-
Genome-wide analysis of DNA copy-number changes using cDNA microarrays
-
10.1038/14385 10471496
-
Pollack J Perou C Alizadeh A Eisen M Pergamenschikov A Williams C Jeffrey S Botstein D Genome-wide analysis of DNA copy-number changes using cDNA microarrays Nat Genet 1999 23 41-46 10.1038/14385 10471496
-
(1999)
Nat Genet
, vol.23
, pp. 41-46
-
-
Pollack, J.1
Perou, C.2
Alizadeh, A.3
Eisen, M.4
Pergamenschikov, A.5
Williams, C.6
Jeffrey, S.7
Botstein, D.8
-
11
-
-
3142550122
-
High-resolution global profiling of genomic alterations with long oligonucleotide microarray
-
10.1158/0008-5472.CAN-04-1241 15256441
-
Brennan C Zhang Y Leo C Fenga B Cauwels C Aguirre A Kim M Protopopov A Chin L High-resolution global profiling of genomic alterations with long oligonucleotide microarray Cancer Res 2004 64 4744-4748 10.1158/ 0008-5472.CAN-04-1241 15256441
-
(2004)
Cancer Res
, vol.64
, pp. 4744-4748
-
-
Brennan, C.1
Zhang, Y.2
Leo, C.3
Fenga, B.4
Cauwels, C.5
Aguirre, A.6
Kim, M.7
Protopopov, A.8
Chin, L.9
-
12
-
-
32644441984
-
BAC to the future! or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH)
-
1356528 16439806 10.1093/nar/gkj456
-
Ylstra B van den Ijssel P Carvalho B Brakenhoff R Meijer G BAC to the future! or oligonucleotides: A perspective for micro array comparative genomic hybridization (array CGH) Nucleic Acids Res 2006 34 445-450 1356528 16439806 10.1093/nar/gkj456
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 445-450
-
-
Ylstra, B.1
van den Ijssel, P.2
Carvalho, B.3
Brakenhoff, R.4
Meijer, G.5
-
13
-
-
31144449056
-
Human and mouse oligonucleotide-based array CGH
-
1316119 16361265
-
van den IJssel PP Chin MTS Eijk P Carvalho B Hopmans E Holstege H Bangarusamy D Jonkers J Meijer G Caldas C Ylstra B Human and mouse oligonucleotide-based array CGH Nucleic Acids Res 2005 33 1316119 16361265
-
(2005)
Nucleic Acids Res
, vol.33
-
-
van den IJssel, P.P.1
Chin, M.T.S.2
Eijk, P.3
Carvalho, B.4
Hopmans, E.5
Holstege, H.6
Bangarusamy, D.7
Jonkers, J.8
Meijer, G.9
Caldas, C.10
Ylstra, B.11
-
14
-
-
3242808027
-
Large-scale copy number polymorphism in the human genome
-
10.1126/science.1098918 15273396
-
Sebat J Lakshmi B Troge J Alexander J Young J Lundin P Maner S Massa H Walker M Chi M Navin N Lucito R Healy J Hicks J Ye K Reiner A Gilliam T Trask B Patterson N Zetterberg A Wigler M Large-scale copy number polymorphism in the human genome Science 2004 305 525-528 10.1126/ science.1098918 15273396
-
(2004)
Science
, vol.305
, pp. 525-528
-
-
Sebat, J.1
Lakshmi, B.2
Troge, J.3
Alexander, J.4
Young, J.5
Lundin, P.6
Maner, S.7
Massa, H.8
Walker, M.9
Chi, M.10
Navin, N.11
Lucito, R.12
Healy, J.13
Hicks, J.14
Ye, K.15
Reiner, A.16
Gilliam, T.17
Trask, B.18
Patterson, N.19
Zetterberg, A.20
Wigler, M.21
more..
-
15
-
-
3543105225
-
Circular binary segmentation for the analysis of array-based DNA copy number data
-
10.1093/biostatistics/kxh008 15475419
-
Olshen A Venkatraman E Lucito R Wigler M Circular binary segmentation for the analysis of array-based DNA copy number data Biostatistics 2004 5 557-572 10.1093/biostatistics/kxh008 15475419
-
(2004)
Biostatistics
, vol.5
, pp. 557-572
-
-
Olshen, A.1
Venkatraman, E.2
Lucito, R.3
Wigler, M.4
-
16
-
-
27544483495
-
Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data
-
10.1093/bioinformatics/bti611 16081473
-
Lai W Johnson M Kucherlapati R Park P Comparative analysis of algorithms for identifying amplifications and deletions in array CGH data Bioinformatics 2005 21 3763-3770 10.1093/bioinformatics/bti611 16081473
-
(2005)
Bioinformatics
, vol.21
, pp. 3763-3770
-
-
Lai, W.1
Johnson, M.2
Kucherlapati, R.3
Park, P.4
-
17
-
-
0001677717
-
Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing
-
Benjamini Y Hochberg Y Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing J.R.S.S. Series B(Methodological) 1995 57 289-300
-
(1995)
J.R.S.S. Series B(Methodological)
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hochberg, Y.2
-
18
-
-
20144389099
-
Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer
-
10.1038/ng1528 15750593
-
Sun X Frierson H Chen C Li C Ran Q Otto K Cantarel B Vessella R Gao A Petros J Miura Y Simons J Dong J Frequent somatic mutations of the transcription factor ATBF1 in human prostate cancer Nat Genet 2005 37 407-412 10.1038/ng1528 15750593
-
(2005)
Nat Genet
, vol.37
, pp. 407-412
-
-
Sun, X.1
Frierson, H.2
Chen, C.3
Li, C.4
Ran, Q.5
Otto, K.6
Cantarel, B.7
Vessella, R.8
Gao, A.9
Petros, J.10
Miura, Y.11
Simons, J.12
Dong, J.13
-
19
-
-
0037376804
-
DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones
-
10.1002/gcc.10155 12619160
-
Fiegler H Carr P Douglas E Burford D Hunt S Scott C Smith J Vetrie D Gorman P Tomlinson I Carter N DNA microarrays for comparative genomic hybridization based on DOP-PCR amplification of BAC and PAC clones Genes Chromosomes Cancer 2003 36 361-374 10.1002/gcc.10155 12619160
-
(2003)
Genes Chromosomes Cancer
, vol.36
, pp. 361-374
-
-
Fiegler, H.1
Carr, P.2
Douglas, E.3
Burford, D.4
Hunt, S.5
Scott, C.6
Smith, J.7
Vetrie, D.8
Gorman, P.9
Tomlinson, I.10
Carter, N.11
-
20
-
-
34247236455
-
-
BACPAC Resources Center http://bacpac.chori.org
-
-
-
-
21
-
-
34247209412
-
-
Caltech BAC Resource Center
-
Caltech BAC Resource Center http://informa.bio.caltech.edu
-
-
-
-
22
-
-
33846039019
-
Ensembl 2007
-
Database
-
Hubbard T Aken B Beall K Ballesterl B Caccamo M Chen Y Clarke L Coates G Cunningham F Cutts T Down T Dyer S Fitzgerald S Fernandez-Banet J Graf S Haider S Hammond M Herrero J Holland R Howe K Howe K Johnson N Kahari A Keefe D Kokocinski F Kulesha E Lawson D Longden I Melsopp C Megy K Meidl P Overduin B Parker A Prlic A Rice S Rios D Schuster M Sealy I Severin J Slater G Smedley D Spudich G Trevanion S Vilella A Vogel J White S Wood M Cox T Curwen V Durbin R Fernandez-Suarez X Flicek P Kasprzyk A Proctor G Searle S Smith J Ureta-Vidal A Birney E Ensembl 2007 Nucleic Acids Res 2007 Database
-
(2007)
Nucleic Acids Res
-
-
Hubbard, T.1
Aken, B.2
Beall, K.3
Ballesterl, B.4
Caccamo, M.5
Chen, Y.6
Clarke, L.7
Coates, G.8
Cunningham, F.9
Cutts, T.10
Down, T.11
Dyer, S.12
Fitzgerald, S.13
Fernandez-Banet, J.14
Graf, S.15
Haider, S.16
Hammond, M.17
Herrero, J.18
Holland, R.19
Howe, K.20
Howe, K.21
Johnson, N.22
Kahari, A.23
Keefe, D.24
Kokocinski, F.25
Kulesha, E.26
Lawson, D.27
Longden, I.28
Melsopp, C.29
Megy, K.30
Meidl, P.31
Overduin, B.32
Parker, A.33
Prlic, A.34
Rice, S.35
Rios, D.36
Schuster, M.37
Sealy, I.38
Severin, J.39
Slater, G.40
Smedley, D.41
Spudich, G.42
Trevanion, S.43
Vilella, A.44
Vogel, J.45
White, S.46
Wood, M.47
Cox, T.48
Curwen, V.49
Durbin, R.50
Fernandez-Suarez, X.51
Flicek, P.52
Kasprzyk, A.53
Proctor, G.54
Searle, S.55
Smith, J.56
Ureta-Vidal, A.57
Birney, E.58
more..
-
23
-
-
34247261315
-
-
UCSC Genome Browser http://hgdownload.cse.ucsc.edu/goldenPath
-
-
-
|