메뉴 건너뛰기




Volumn 50, Issue 4, 2008, Pages 352-369

Methods for acquisition of quantitative from confocal images of gene expression in situ

Author keywords

Background removal; Confocal microscopy; Image segmentation; Methods of image processing; Quantitative gene expression; Spatial registration

Indexed keywords

DROSOPHILA PROTEIN;

EID: 45149112235     PISSN: 00413771     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article
Times cited : (1)

References (41)
  • 1
    • 45149125771 scopus 로고    scopus 로고
    • Russian source
    • Russian source
  • 2
    • 45149130543 scopus 로고    scopus 로고
    • Russian source
    • Russian source
  • 3
    • 45149101145 scopus 로고    scopus 로고
    • Russian source
    • Russian source
  • 4
    • 45149124166 scopus 로고    scopus 로고
    • Russian source
    • Russian source
  • 5
    • 0027237596 scopus 로고
    • tinman and bagpipe: Two homeobox genes that determine cell fates in the dorsal mesoderm of Dro-sophila
    • Azpiazu N., Frasch M. 1993. tinman and bagpipe: two homeobox genes that determine cell fates in the dorsal mesoderm of Dro-sophila. Genes Develop. 7: 1325-1340.
    • (1993) Genes Develop , vol.7 , pp. 1325-1340
    • Azpiazu, N.1    Frasch, M.2
  • 6
    • 0036277075 scopus 로고    scopus 로고
    • Functional genomics as applied to mapping transcription regulatory networks
    • Banerjee N., Zhang M. Q. 2002. Functional genomics as applied to mapping transcription regulatory networks. Curr. Opin. Microbiol. 5: 313-317.
    • (2002) Curr. Opin. Microbiol , vol.5 , pp. 313-317
    • Banerjee, N.1    Zhang, M.Q.2
  • 7
    • 0026967479 scopus 로고
    • A survey of image registration techniques
    • Brown L. G. 1992. A survey of image registration techniques. ACM Computing Surveys. 24 (4): 325-376.
    • (1992) ACM Computing Surveys , vol.24 , Issue.4 , pp. 325-376
    • Brown, L.G.1
  • 8
    • 4444340185 scopus 로고    scopus 로고
    • 3D-catFISH: A system for automated quantitative three-dimensional compartmental analysis of temporal gene transcription activity imaged by fluorescence in situ hybridization
    • Chawla M. K., Lin G., Olson K., Vazdarjanova A., Burke S. N., McNaughlon B. L., Worley P. F., Guzowski J. F., Roysam B., Barnes C. A. 2004. 3D-catFISH: a system for automated quantitative three-dimensional compartmental analysis of temporal gene transcription activity imaged by fluorescence in situ hybridization. J. Neurosci. Methods. 139: 13-24.
    • (2004) J. Neurosci. Methods , vol.139 , pp. 13-24
    • Chawla, M.K.1    Lin, G.2    Olson, K.3    Vazdarjanova, A.4    Burke, S.N.5    McNaughlon, B.L.6    Worley, P.F.7    Guzowski, J.F.8    Roysam, B.9    Barnes, C.A.10
  • 9
    • 84883422110 scopus 로고
    • Geometric filter for speckle reduction
    • Crimmins T. R. 1985. Geometric filter for speckle reduction. Appl. Opt. 24: 1438-1443.
    • (1985) Appl. Opt , vol.24 , pp. 1438-1443
    • Crimmins, T.R.1
  • 10
    • 0021186263 scopus 로고
    • Proteins shifting from the cytoplasm into the nuclei during early embryogenesis of Drosophila melanogaster
    • Dequin R., Saumweber H., Sedat J. 1984. Proteins shifting from the cytoplasm into the nuclei during early embryogenesis of Drosophila melanogaster. Develop. Biol. 104: 37-48.
    • (1984) Develop. Biol , vol.104 , pp. 37-48
    • Dequin, R.1    Saumweber, H.2    Sedat, J.3
  • 11
    • 0023299695 scopus 로고
    • Characterization and localization of the even-skipped protein of Drosophila
    • Frasch M., Hoey T., Rushlow C. 1987. Characterization and localization of the even-skipped protein of Drosophila. EMBO J. 6: 749-759.
    • (1987) EMBO J , vol.6 , pp. 749-759
    • Frasch, M.1    Hoey, T.2    Rushlow, C.3
  • 12
    • 0004531378 scopus 로고    scopus 로고
    • Sunderland, Massachusetts: Sinauer Associates. 839 p
    • Gilbert S. F. 2003. Development biology. Sunderland, Massachusetts: Sinauer Associates. 839 p.
    • (2003) Development biology
    • Gilbert, S.F.1
  • 13
    • 45149098627 scopus 로고    scopus 로고
    • Gonzalez R. C., Woods R. E. 2002. Digital image processing. Upper Saddle River, N. J.: Prentice Hall. 730 p.
    • Gonzalez R. C., Woods R. E. 2002. Digital image processing. Upper Saddle River, N. J.: Prentice Hall. 730 p.
  • 16
    • 84937655864 scopus 로고
    • Visual pattern recognition by moment invariants. IRE transactions of information theory
    • Hu M.-K. 1962. Visual pattern recognition by moment invariants. IRE transactions of information theory. IRE Transactions on Information Theory. 8: 179-187.
    • (1962) IRE Transactions on Information Theory , vol.8 , pp. 179-187
    • Hu, M.-K.1
  • 17
    • 0037075022 scopus 로고    scopus 로고
    • Establishment of developmental precision and proportions in the early Drosophila embryo
    • Houchmandzadeh B., Wieschaus E., Leibler S. 2002. Establishment of developmental precision and proportions in the early Drosophila embryo. Nature. 415: 748-749.
    • (2002) Nature , vol.415 , pp. 748-749
    • Houchmandzadeh, B.1    Wieschaus, E.2    Leibler, S.3
  • 19
    • 3142734333 scopus 로고    scopus 로고
    • Jaeger J., Surkova S., Blagov M., Janssens H., Kosman D., Kozlov K., Manu, Myasnikova E., Vanario-Alonso C.-E., Samsono va M, Sharp D., Reinitz J. 2004b. Dynamic control of positional information in the early Drosophila embryo. Nature. 430: 368-371.
    • Jaeger J., Surkova S., Blagov M., Janssens H., Kosman D., Kozlov K., Manu, Myasnikova E., Vanario-Alonso C.-E., Samsono va M, Sharp D., Reinitz J. 2004b. Dynamic control of positional information in the early Drosophila embryo. Nature. 430: 368-371.
  • 20
    • 33749137281 scopus 로고    scopus 로고
    • Quantitative and predictive model of transcription control of the Drosophila melanogaster even-skipped gene
    • Janssens H., Hou S., Jaeger J., Kim A. R., Myasnikova E., Sharp D., Reinitz J. 2006. Quantitative and predictive model of transcription control of the Drosophila melanogaster even-skipped gene. Nature Genetics. 38: 1159-1165.
    • (2006) Nature Genetics , vol.38 , pp. 1159-1165
    • Janssens, H.1    Hou, S.2    Jaeger, J.3    Kim, A.R.4    Myasnikova, E.5    Sharp, D.6    Reinitz, J.7
  • 23
    • 0031814029 scopus 로고    scopus 로고
    • Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins
    • Kosman D., Small S., Reinitz J. 1998. Rapid preparation of a panel of polyclonal antibodies to Drosophila segmentation proteins. Develop. Gen. Evol. 208: 290-294.
    • (1998) Develop. Gen. E , vol.208 , pp. 290-294
    • Kosman, D.1    Small, S.2    Reinitz, J.3
  • 24
    • 0036014564 scopus 로고    scopus 로고
    • A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ
    • Kozlov K., Myasnikova E., Pisarev A., Samsonova M., Reinitz J. 2002. A method for two-dimensional registration and construction of the two-dimensional atlas of gene expression patterns in situ. In Silico Biology. 2: 125-141.
    • (2002) In Silico Biology , vol.2 , pp. 125-141
    • Kozlov, K.1    Myasnikova, E.2    Pisarev, A.3    Samsonova, M.4    Reinitz, J.5
  • 25
    • 0001314223 scopus 로고    scopus 로고
    • Method for spatial registration of the expression patterns of Drosophila segmentation genes using wavelets
    • Kozlov K., Myasnikova E., Samsonova M., Reinitz J., Kosman D. 2000. Method for spatial registration of the expression patterns of Drosophila segmentation genes using wavelets. Computational Technologies. 5: 112-119.
    • (2000) Computational Technologies , vol.5 , pp. 112-119
    • Kozlov, K.1    Myasnikova, E.2    Samsonova, M.3    Reinitz, J.4    Kosman, D.5
  • 28
    • 43149123569 scopus 로고    scopus 로고
    • Extraction of quantitative gene expression data from the images of gene expression patterns with ProStack and iSIMBioS
    • Tampere, Finland
    • Matveeva A., Kozlov K., Samsonova M. 2006. Extraction of quantitative gene expression data from the images of gene expression patterns with ProStack and iSIMBioS. In: Proc. of the 4rd TICSP Workshop on Computational Systems Biology (WCSB 2006). Tampere, Finland. 65-68.
    • (2006) Proc. of the 4rd TICSP Workshop on Computational Systems Biology (WCSB , pp. 65-68
    • Matveeva, A.1    Kozlov, K.2    Samsonova, M.3
  • 29
    • 0035115973 scopus 로고    scopus 로고
    • Registration of the expression patterns of Drosophila segmentation genes by two independent methods
    • Myasnikova E., Samsonova A., Kozlov K., Samsonova M., Reinitz J. 2001. Registration of the expression patterns of Drosophila segmentation genes by two independent methods. Bioinformatics. 17: 3-12.
    • (2001) Bioinformatics , vol.17 , pp. 3-12
    • Myasnikova, E.1    Samsonova, A.2    Kozlov, K.3    Samsonova, M.4    Reinitz, J.5
  • 30
    • 4644258117 scopus 로고    scopus 로고
    • Support vector regression applied to the determination of the developmental age of a Drosophila embryo form its segmentation gene expression patterns
    • Myasnikova E., Samsonova A., Samsonova M., Reinitz J. 2002. Support vector regression applied to the determination of the developmental age of a Drosophila embryo form its segmentation gene expression patterns. Bioinformatics. 18: S87-S95.
    • (2002) Bioinformatics , vol.18
    • Myasnikova, E.1    Samsonova, A.2    Samsonova, M.3    Reinitz, J.4
  • 31
    • 21344474605 scopus 로고    scopus 로고
    • Removal of background signal from in situ data on the expression of segmentation genes in Drosophila
    • Myasnikova E., Samsonova M., Kosman D., Reinitz J. 2005. Removal of background signal from in situ data on the expression of segmentation genes in Drosophila. Develop. Gen. Evol. 215: 320-326.
    • (2005) Develop. Gen. E , vol.215 , pp. 320-326
    • Myasnikova, E.1    Samsonova, M.2    Kosman, D.3    Reinitz, J.4
  • 35
    • 33745727726 scopus 로고    scopus 로고
    • The living test-tube: Imaging of real-time gene expression
    • Shav-Tal Y. 2006. The living test-tube: imaging of real-time gene expression. Soft Matter. 2: 361-370.
    • (2006) Soft Matter , vol.2 , pp. 361-370
    • Shav-Tal, Y.1
  • 38
    • 0344334039 scopus 로고    scopus 로고
    • Efficient cell segmentation tool for confocal microscopy tissue images and quantitative evaluation of FISH signal
    • Umesh Adiga P. S., Chaudhuri B. B. 1999. Efficient cell segmentation tool for confocal microscopy tissue images and quantitative evaluation of FISH signal. Microsc. Res. Tech. 44: 49-68.
    • (1999) Microsc. Res. Tech , vol.44 , pp. 49-68
    • Umesh Adiga, P.S.1    Chaudhuri, B.B.2
  • 39
    • 85130240668 scopus 로고    scopus 로고
    • A practical guide to the implementation of the wavelet transform
    • A. Al-droubi M. A. Unser Eds, Boca Raton, FL, USA: CRC Press
    • Unser M. 1996. A practical guide to the implementation of the wavelet transform. In: Wavelets in medicine and biology. A. Al-droubi M. A. Unser (Eds). Boca Raton, FL, USA: CRC Press. 37-73.
    • (1996) Wavelets in medicine and biology , pp. 37-73
    • Unser, M.1
  • 40
    • 0028714160 scopus 로고
    • Fact implementation of the continuous wavelet transform with integral scales
    • Unser M., Aldroubi A., Schiff S. 1994. Fact implementation of the continuous wavelet transform with integral scales. IEEE Trans. Signal Process. 42: 3519-3523.
    • (1994) IEEE Trans. Signal Process , vol.42 , pp. 3519-3523
    • Unser, M.1    Aldroubi, A.2    Schiff, S.3
  • 41
    • 0027576716 scopus 로고
    • Morphological grayscale reconstruction in image analysis: Applications and efficient algorithms
    • Vincent L. 1993. Morphological grayscale reconstruction in image analysis: applications and efficient algorithms. IEEE Trans-actions Image on Processing. 2: 176-201.
    • (1993) IEEE Trans-actions Image on Processing , vol.2 , pp. 176-201
    • Vincent, L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.