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Volumn 418, Issue 1-2, 2008, Pages 34-40

Identification of novel chicken microRNAs and analysis of their genomic organization

Author keywords

Chicken; Expression pattern; Gene cluster; MicroRNA

Indexed keywords

MICRORNA;

EID: 44949129595     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.04.004     Document Type: Article
Times cited : (24)

References (42)
  • 1
    • 18744367544 scopus 로고    scopus 로고
    • Clustering and conservation patterns of human microRNAs
    • Altuvia Y., et al. Clustering and conservation patterns of human microRNAs. Nucleic Acids Res. 33 (2005) 2697-2706
    • (2005) Nucleic Acids Res. , vol.33 , pp. 2697-2706
    • Altuvia, Y.1
  • 2
    • 33748928738 scopus 로고    scopus 로고
    • Differences in vertebrate microRNA expression
    • Ason B., et al. Differences in vertebrate microRNA expression. Proc. Natl. Acad. Sci. U.S.A. 103 (2006) 14385-14389
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 14385-14389
    • Ason, B.1
  • 4
    • 0347444723 scopus 로고    scopus 로고
    • MicroRNAs: genomics, biogenesis, mechanism, and function
    • Bartel D.P. MicroRNAs: genomics, biogenesis, mechanism, and function. Cell 116 (2004) 281-297
    • (2004) Cell , vol.116 , pp. 281-297
    • Bartel, D.P.1
  • 5
    • 22844440427 scopus 로고    scopus 로고
    • Identification of hundreds of conserved and nonconserved human microRNAs
    • Bentwich I., et al. Identification of hundreds of conserved and nonconserved human microRNAs. Nat. Genet. 37 (2005) 766-770
    • (2005) Nat. Genet. , vol.37 , pp. 766-770
    • Bentwich, I.1
  • 8
    • 33751548288 scopus 로고    scopus 로고
    • Diversity of microRNAs in human and chimpanzee brain
    • Berezikov E., et al. Diversity of microRNAs in human and chimpanzee brain. Nat. Genet. 38 (2006) 1375-1377
    • (2006) Nat. Genet. , vol.38 , pp. 1375-1377
    • Berezikov, E.1
  • 9
    • 33749377869 scopus 로고    scopus 로고
    • Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
    • Berezikov E., et al. Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis. Genome Res. 16 (2006) 1289-1298
    • (2006) Genome Res. , vol.16 , pp. 1289-1298
    • Berezikov, E.1
  • 10
    • 10244243802 scopus 로고    scopus 로고
    • Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences
    • Bonnet E., Wuyts J., Rouze P., and Van de Peer Y. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20 (2004) 2911-2917
    • (2004) Bioinformatics , vol.20 , pp. 2911-2917
    • Bonnet, E.1    Wuyts, J.2    Rouze, P.3    Van de Peer, Y.4
  • 11
    • 0037306116 scopus 로고    scopus 로고
    • The chicken as a model for large-scale analysis of vertebrate gene function
    • Brown W.R., Hubbard S.J., Tickle C., and Wilson S.A. The chicken as a model for large-scale analysis of vertebrate gene function. Nat. Rev. Genet. 4 (2003) 87-98
    • (2003) Nat. Rev. Genet. , vol.4 , pp. 87-98
    • Brown, W.R.1    Hubbard, S.J.2    Tickle, C.3    Wilson, S.A.4
  • 12
    • 33846283385 scopus 로고    scopus 로고
    • The evolution of gene regulation by transcription factors and microRNAs
    • Chen K., and Rajewsky N. The evolution of gene regulation by transcription factors and microRNAs. Nat. Rev. Genet. 8 (2007) 93-103
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 93-103
    • Chen, K.1    Rajewsky, N.2
  • 13
    • 22344449952 scopus 로고    scopus 로고
    • The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    • Chen P.Y., et al. The developmental miRNA profiles of zebrafish as determined by small RNA cloning. Genes Dev. 19 (2005) 1288-1293
    • (2005) Genes Dev. , vol.19 , pp. 1288-1293
    • Chen, P.Y.1
  • 16
    • 0027018236 scopus 로고
    • A series of normal stages in the development of the chick embryo. 1951
    • Hamburger V., and Hamilton H.L. A series of normal stages in the development of the chick embryo. 1951. Dev. Dyn. 195 (1992) 231-272
    • (1992) Dev. Dyn. , vol.195 , pp. 231-272
    • Hamburger, V.1    Hamilton, H.L.2
  • 17
    • 3042767202 scopus 로고    scopus 로고
    • MicroRNAs: small RNAs with a big role in gene regulation
    • He L., and Hannon G.J. MicroRNAs: small RNAs with a big role in gene regulation. Nat. Rev. Genet. 5 (2004) 522-531
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 522-531
    • He, L.1    Hannon, G.J.2
  • 19
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • Hillier, et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 432 (2004) 695-716
    • (2004) Nature , vol.432 , pp. 695-716
    • Hillier1
  • 20
    • 0043123153 scopus 로고    scopus 로고
    • Vienna RNA secondary structure server
    • Hofacker I.L. Vienna RNA secondary structure server. Nucleic Acids Res. 31 (2003) 3429-3431
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3429-3431
    • Hofacker, I.L.1
  • 21
    • 0042442335 scopus 로고    scopus 로고
    • Embryonic stem cell-specific MicroRNAs
    • Houbaviy H.B., Murray M.F., and Sharp P.A. Embryonic stem cell-specific MicroRNAs. Dev. Cell 5 (2003) 351-358
    • (2003) Dev. Cell , vol.5 , pp. 351-358
    • Houbaviy, H.B.1    Murray, M.F.2    Sharp, P.A.3
  • 22
    • 33344477448 scopus 로고    scopus 로고
    • Genomics of microRNA
    • Kim V.N., and Nam J.W. Genomics of microRNA. Trends Genet. 22 (2006) 165-173
    • (2006) Trends Genet. , vol.22 , pp. 165-173
    • Kim, V.N.1    Nam, J.W.2
  • 23
    • 34250877841 scopus 로고    scopus 로고
    • A mammalian microRNA expression atlas based on small RNA library sequencing
    • Landgraf P., et al. A mammalian microRNA expression atlas based on small RNA library sequencing. Cell 129 (2007) 1401-1414
    • (2007) Cell , vol.129 , pp. 1401-1414
    • Landgraf, P.1
  • 24
    • 11844278458 scopus 로고    scopus 로고
    • Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets
    • Lewis B.P., Burge C.B., and Bartel D.P. Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets. Cell 120 (2005) 15-20
    • (2005) Cell , vol.120 , pp. 15-20
    • Lewis, B.P.1    Burge, C.B.2    Bartel, D.P.3
  • 25
    • 0037447334 scopus 로고    scopus 로고
    • The microRNAs of Caenorhabditis elegans
    • Lim L.P., et al. The microRNAs of Caenorhabditis elegans. Genes Dev. 17 (2003) 991-1008
    • (2003) Genes Dev. , vol.17 , pp. 991-1008
    • Lim, L.P.1
  • 26
    • 34347354764 scopus 로고    scopus 로고
    • Molecular patterns of sex determination in the animal kingdom: a comparative study of the biology of reproduction
    • Manolakou P., Lavranos G., and Angelopoulou R. Molecular patterns of sex determination in the animal kingdom: a comparative study of the biology of reproduction. Reprod. Biol. Endocrinol. 4 (2006) 59
    • (2006) Reprod. Biol. Endocrinol. , vol.4 , pp. 59
    • Manolakou, P.1    Lavranos, G.2    Angelopoulou, R.3
  • 27
    • 33846053464 scopus 로고    scopus 로고
    • miRGen: a database for the study of animal microRNA genomic organization and function
    • Megraw M., Sethupathy P., Corda B., and Hatzigeorgiou A.G. miRGen: a database for the study of animal microRNA genomic organization and function. Nucleic Acids Res. 35 (2007) D149-D155
    • (2007) Nucleic Acids Res. , vol.35
    • Megraw, M.1    Sethupathy, P.2    Corda, B.3    Hatzigeorgiou, A.G.4
  • 29
    • 34347355440 scopus 로고    scopus 로고
    • miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii
    • Molnar A., Schwach F., Studholme D.J., Thuenemann E.C., and Baulcombe D.C. miRNAs control gene expression in the single-cell alga Chlamydomonas reinhardtii. Nature 447 (2007) 1126-1129
    • (2007) Nature , vol.447 , pp. 1126-1129
    • Molnar, A.1    Schwach, F.2    Studholme, D.J.3    Thuenemann, E.C.4    Baulcombe, D.C.5
  • 30
    • 34147147595 scopus 로고    scopus 로고
    • The evolution of animal microRNA function
    • Niwa R., and Slack F.J. The evolution of animal microRNA function. Curr. Opin. Genet. Dev. 17 (2007) 145-150
    • (2007) Curr. Opin. Genet. Dev. , vol.17 , pp. 145-150
    • Niwa, R.1    Slack, F.J.2
  • 31
    • 6344281172 scopus 로고    scopus 로고
    • Identification of mammalian microRNA host genes and transcription units
    • Rodriguez A., Griffiths-Jones S., Ashurst J.L., and Bradley A. Identification of mammalian microRNA host genes and transcription units. Genome Res. 14 (2004) 1902-1910
    • (2004) Genome Res. , vol.14 , pp. 1902-1910
    • Rodriguez, A.1    Griffiths-Jones, S.2    Ashurst, J.L.3    Bradley, A.4
  • 32
    • 25144458451 scopus 로고    scopus 로고
    • Mapping and expression studies of the mir17-92 cluster on pig chromosome 11
    • Sawera M., Gorodkin J., Cirera S., and Fredholm M. Mapping and expression studies of the mir17-92 cluster on pig chromosome 11. Mamm. Genome 16 (2005) 594-598
    • (2005) Mamm. Genome , vol.16 , pp. 594-598
    • Sawera, M.1    Gorodkin, J.2    Cirera, S.3    Fredholm, M.4
  • 33
    • 2942534403 scopus 로고    scopus 로고
    • Human embryonic stem cells express a unique set of microRNAs
    • Suh M.R., et al. Human embryonic stem cells express a unique set of microRNAs. Dev. Biol. 270 (2004) 488-498
    • (2004) Dev. Biol. , vol.270 , pp. 488-498
    • Suh, M.R.1
  • 34
    • 33746997457 scopus 로고    scopus 로고
    • FGF-4 signaling is involved in mir-206 expression in developing somites of chicken embryos
    • Sweetman D., Rathjen T., Jefferson M., Wheeler G., Smith T.G., and Wheeler G.N. FGF-4 signaling is involved in mir-206 expression in developing somites of chicken embryos. Dev. Dyn. 235 (2006) 2185-2191
    • (2006) Dev. Dyn. , vol.235 , pp. 2185-2191
    • Sweetman, D.1    Rathjen, T.2    Jefferson, M.3    Wheeler, G.4    Smith, T.G.5    Wheeler, G.N.6
  • 35
    • 2342450524 scopus 로고    scopus 로고
    • Molecular evolution of a microRNA cluster
    • Tanzer A., and Stadler P.F. Molecular evolution of a microRNA cluster. J. Mol. Biol. 339 (2004) 327-335
    • (2004) J. Mol. Biol. , vol.339 , pp. 327-335
    • Tanzer, A.1    Stadler, P.F.2
  • 36
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: microRNAs can up-regulate translation
    • Vasudevan S., Tong Y., and Steitz J.A. Switching from repression to activation: microRNAs can up-regulate translation. Science 318 (2007) 1931-1934
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 38
    • 11444251652 scopus 로고    scopus 로고
    • New human and mouse microRNA genes found by homology search
    • Weber M.J. New human and mouse microRNA genes found by homology search. Febs J. 272 (2005) 59-73
    • (2005) Febs J. , vol.272 , pp. 59-73
    • Weber, M.J.1
  • 39
    • 33745126599 scopus 로고    scopus 로고
    • Identification of microRNAs from different tissues of chicken embryo and adult chicken
    • Xu H., Wang X., Du Z., and Li N. Identification of microRNAs from different tissues of chicken embryo and adult chicken. FEBS Lett. 580 (2006) 3610-3616
    • (2006) FEBS Lett. , vol.580 , pp. 3610-3616
    • Xu, H.1    Wang, X.2    Du, Z.3    Li, N.4
  • 40
    • 33748286897 scopus 로고    scopus 로고
    • Human microRNA clusters: genomic organization and expression profile in leukemia cell lines
    • Yu J., et al. Human microRNA clusters: genomic organization and expression profile in leukemia cell lines. Biochem. Biophys. Res. Commun. 349 (2006) 59-68
    • (2006) Biochem. Biophys. Res. Commun. , vol.349 , pp. 59-68
    • Yu, J.1
  • 41
    • 34248196026 scopus 로고    scopus 로고
    • Rapid evolution of an X-linked microRNA cluster in primates
    • Zhang R., Peng Y., Wang W., and Su B. Rapid evolution of an X-linked microRNA cluster in primates. Genome Res. 17 (2007) 612-617
    • (2007) Genome Res. , vol.17 , pp. 612-617
    • Zhang, R.1    Peng, Y.2    Wang, W.3    Su, B.4
  • 42
    • 34249093687 scopus 로고    scopus 로고
    • A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii
    • Zhao T., et al. A complex system of small RNAs in the unicellular green alga Chlamydomonas reinhardtii. Genes Dev. 21 (2007) 1190-1203
    • (2007) Genes Dev. , vol.21 , pp. 1190-1203
    • Zhao, T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.