Molecular evaluation of nominal species in the Ceratitis fasciventris, C. anonae, C. rosa complex (Diptera: Tephritidae)

Molecular Phylogenetics and Evolution

Volumn 48, Issue 1, 2008, Pages 270-280

  Virgilio, M ^a,b   Backeljau, T ^b,c   Barr, N ^d   Meyer, M De ^a  

^a ROYAL MUSEUM FOR CENTRAL AFRICA   (Belgium)

^b ROYAL BELGIAN INSTITUTE OF NATURAL SCIENCES   (Belgium)

^c UNIVERSITY OF ANTWERP   (Belgium)

^d UNITED STATES DEPARTMENT OF AGRICULTURE   (United States)

Author keywords

Cryptic species; DNA taxonomy; Fruit flies; Pest species; Species complex

Indexed keywords

AFRICA; ANIMAL; ARTICLE; CELL NUCLEUS; CLASSIFICATION; GENETICS; MITOCHONDRIAL GENE; MOLECULAR EVOLUTION; PHYLOGENY; TEPHRITIDAE;

AFRICA; ANIMALS; CELL NUCLEUS; EVOLUTION, MOLECULAR; GENES, MITOCHONDRIAL; PHYLOGENY; TEPHRITIDAE;

CERATITIS FASCIVENTRIS; DIPTERA; TEPHRITIDAE;

EID: 44949085336     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2008.04.018     Document Type: Article

References (46)

1. Baliraine F.N., Bonizzoni M., Guglielmino C.R., Osir E.O., Lux S.A., Mulaa F.J., Gomulski L.M., Zheng L., Quilici S., Gasperi G., and Malacrida A.R. Population genetics of the potentially invasive African fruit fly species, Ceratitis rosa and Ceratitis fasciventris (Diptera: Tephritidae). Mol. Ecol. 13 (2004) 683-695
2. Barr N.B., Copeland R.S., De Meyer M., Masiga D., Kibogo H.G., Billah M.K., Osir E., Wharton R.A., and McPheron B.A. Molecular diagnostics of economically important fruit fly species (Diptera: Tephritidae) in Africa using PCR and RFLP analyses. Bull. Entomol. Res. 96 (2006) 505-521
3. Barr N.B., and McPheron B.A. Molecular phylogenetics of the genus Ceratitis (Diptera: Tephritidae). Mol. Phylogenet. Evol. 38 (2006) 216-230
4. Benjamini Y., and Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Stat. Soc. B 57 (1995) 289-300
5. Copeland R.S., and Wharton R.A. Year-round production of pest Ceratitis species (Diptera: Tephritidae) in fruit of the invasive species Solanum mauritianum in Kenya. Ann. Entomol. Soc. Am. 99 (2006) 3530-3535
6. Copeland R.S., Wharton R.A., Luke Q., De Meyer M., Lux S., Zenz N., Machera P., and Okumu M. Geographic distribution, host fruit, and parasitoids of African fruit fly pests Ceratitis anonae, Ceratitis cosyra, Ceratitis fasciventris, and Ceratitis rosa (Diptera: Tephritidae) in Kenya. Ann. Entomol. Soc. Am. 99 (2006) 261-278
7. De Meyer M. Distribution patterns and host-plant relationships within the genus Ceratitis MacLeay (Diptera: Tephritidae) in Africa. Cimbebasia 17 (2001) 219-228
8. De Meyer M. On the identity of the Natal fruit fly Ceratitis rosa Karsch (Diptera, Tephritidae). Bull. Inst. Roy. Sci. Nat. Belg. Entomol. 71 (2001) 55-62
9. De Meyer M. Phylogenetic relationships within the fruit fly genus Ceratitis MacLeay (Diptera: Tephritidae), derived from morphological and host plant evidence. Insect. Syst. Evol. 36 (2005) 459-480
10. De Meyer M., Copeland R.S., Lux S., Mansell M., Wharton R., White I.M., and Zenz N. Annotated check list of host plants for Afrotropical fruit flies (Diptera: Tephritidae) of the genus Ceratitis. Docum. Zool. Mus. r. Afr. cent. 27 (2002) 1-92
11. De Meyer M., and Freidberg A. Revision of the subgenus Ceratitis (Pterandrus) Bezzi (Diptera: Tephritidae). Isr. J. Entomol. 36 (2006) 197-315
12. De Meyer M., Robertson M.P., Peterson A.T., and Mansell M.W. Ecological niches and potential geographical distributions of Mediterranean fruit fly (Ceratitis capitata) and Natal fruit fly (Ceratitis rosa). J. Biogeogr. 35 (2008) 270-281
13. Douglas L., and Haymer D.S. Ribosomal ITS1 polymorphisms in Ceratitis capitata and Ceratitis rosa (Diptera: Tephritidae). Ann. Entomol. Soc. Am. 94 (2001) 726-731
14. Duyck P.-F., David P., and Quilici S. A review of relationships between interspecific competition and invasions in fruit flies (Diptera: Tephritidae). Ecol. Entomol. 29 (2004) 511-520
15. Edwards S.V., Liu L., and Pearl D.K. High-resolution species trees without concatenation. Proc. Natl. Acad. Sci. USA 104 (2007) 5936-5941
16. Erbout N., De Meyer M., and Lens L. Hybridisation between two polyphagous fruit fly species (Diptera: Tephritidae) causes sex-biased reduction in developmental stability. Biol. J. Linn. Soc. 93 (2008) 579-588
17. Feder J.L., Williams S.M., Berlocher S.H., McPheron B.A., and Bush G.L. The population genetics of the apple maggot fly, Rhagoletis pomonella and the snowberry maggot, Rzephyria: implications for models of sympatric speciation. Entomol. Exp. Appl. 90 (1999) 9-24
18. Fu Y.X., and Li W.H. Statistical tests of neutrality of mutations. Genetics 133 (1993) 693-709
19. Funk D.J., and Omland K.E. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Annu. Rev. Ecol. Syst. 34 (2003) 397-423
20. Guindon S., and Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 52 (2003) 696-704
21. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. 41 (1999) 95-98
22. Hancock D.L. Pest status; Southern Africa (subfamily Ceratitidinae). In: Robinson A., and Hooper G. (Eds). Fruit Flies, Their Biology, Natural Enemies and Control (1989), Elsevier, New York 54-58
23. Hancock D.L., and White I.M. The identity of Tririthrum nigrum (Graham) and some new combinations in Ceratitis MacLeay (Diptera: Tephritidae). Entomologist 116 (1997) 192-197
24. Hasegawa M., Kishino H., and Yano T. Dating the human-ape split by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22 (1985) 160-174
25. Hebert P.D.N. Biological identifications through DNA barcodes. Proc. R. Soc. Lond. B 270 (2003) 313-321
26. Hillis D.M., and Bull J.J. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42 (1993) 182-192
27. Kumar S., Tamura K., and Nei M. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief. Bioinform. 5 (2004) 150-163
28. Malacrida A., Gomulski L., Bonizzoni M., Bertin S., Gasperi G., and Guglielmino C. Globalization and fruit fly invasion and expansion: the medfly paradigm. Genetica 131 (2007) 1-9
29. Mishler B.D., and Theriot E. The phylogenetic species concept sensu Mishler and Theriot: monophyly, apomorphy, and phylogenetic species concepts. In: Wheeler Q.D., and Meier E. (Eds). Species Concepts and Phylogenetic Theory: A Debate (2000), Columbia University Press, New York 44-54
30. Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial-gene trees versus nuclear-gene trees. Evolution 49 (1995) 718-726
31. Nielsen R. Statistical tests of selective neutrality in the age of genomics. Heredity 86 (2001) 641-647
32. Nylander J.A.A. MrModeltest v2. Program Distributed by the Author (2004), Evolutionary Biology Centre, Uppsala University
33. Parkin E.J., and Butlin R.K. Within- and between-individual sequence variation among ITS1 copies in the meadow grasshopper Chorthippus parallelus indicates frequent intrachromosomal gene conversion. Mol. Biol. Evol. 21 (2004) 1595-1601
34. Pike N., and Meats A. Potential for mating between Bactrocera tryoni (Froggatt) and Bactrocera neohumeralis (Hardy) (Diptera: Tephritidae). Aust. J. Entomol. 41 (2002) 70-74
35. Pike N., Wang W.Y.S., and Meats A. The likely fate of hybrids of Bactrocera tryoni and Bactrocera neohumeralis. Heredity 90 (2003) 365-370
36. Quilici S., Franck A., Peppuy A., Dos Reis Correia E., Mouniama C., and Blard F. Comparative studies of courtship behaviour of Ceratitis spp. (Diptera: Tephritidae) in Reunion island. Florida Entomol. 85 (2002) 138-142
37. Rozas J., Sanchez-DelBarrio J.C., Messeguer X., and Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 (2003) 2496-2497
38. Schmidt H.A., Strimmer K., Vingron M., and von Haeseler A. TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinformatics 18 (2002) 502-504
39. Schneider S., Roessli D., and Excoffier L. Arlequin, Version 2.000: A Software for Population Genetics Data Analysis (2000), Genetics and Biometry Laboratory, University of Geneva, Switzerland
40. Shaw K.L. Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proc. Natl. Acad. Sci. USA 99 (2002) 16122-16127
41. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
42. Sota T., and Vogler A.P. Incongruence of mitochondrial and nuclear gene trees in the carabid beetles Ohomopterus. Syst. Biol. 50 (2001) 39-59
43. Strimmer K., and von Haeseler A. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. USA 94 (1997) 6815-6819
44. Swofford D.L. Phylogenetic Analysis Using Parsimony (and Other Methods). Version 4 (2002), Sinauer Associates, Sunderland, MA
45. Tajima F. Statistical methods to test for nucleotide mutation hypothesis by DNA polymorphism. Genetics 123 (1989) 585-595
46. Tavaré S. Some probabilistic and statistical problems in the analysis of DNA sequences. In: Miura R.M. (Ed). Some Mathematical Questions in Biology-DNA Sequence Analysis (1986), American Mathematical Society, Providence 57-86