-
1
-
-
23944500622
-
Direct molecular haplotyping by melting curve analysis of hybridization probes: Beta 2-adrenergic receptor haplotypes as an example
-
Pont-Kingdon G, Lyon E. Direct molecular haplotyping by melting curve analysis of hybridization probes: beta 2-adrenergic receptor haplotypes as an example. Nucleic Acids Res 2005;33:e89.
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Pont-Kingdon, G.1
Lyon, E.2
-
2
-
-
34247567113
-
Multiplex genotyping by melting analysis of loci-spanning probes: Beta-globin as an example
-
Pont-Kingdon G, Chou LS, Damjanovich K, Sumner K, Herrmann M, Erali M, Lyon E. Multiplex genotyping by melting analysis of loci-spanning probes: beta-globin as an example. Biotechniques 2007;42:193-7.
-
(2007)
Biotechniques
, vol.42
, pp. 193-197
-
-
Pont-Kingdon, G.1
Chou, L.S.2
Damjanovich, K.3
Sumner, K.4
Herrmann, M.5
Erali, M.6
Lyon, E.7
-
3
-
-
33645224189
-
Masking selected sequence variation by incorporating mismatches into melting analysis probes
-
Margraf RL, Mao R, Wittwer CT. Masking selected sequence variation by incorporating mismatches into melting analysis probes. Hum Mutat 2006;27:269-78.
-
(2006)
Hum Mutat
, vol.27
, pp. 269-278
-
-
Margraf, R.L.1
Mao, R.2
Wittwer, C.T.3
-
4
-
-
0030875847
-
Thermodynamics and NMR of internal G.T mismatches in DNA
-
Allawi HT, SantaLucia J Jr. Thermodynamics and NMR of internal G.T mismatches in DNA. Biochemistry 1997;36:10581-94.
-
(1997)
Biochemistry
, vol.36
, pp. 10581-10594
-
-
Allawi, H.T.1
SantaLucia Jr., J.2
-
5
-
-
0032581024
-
Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: Sequence dependence and pH effects
-
Allawi HT, SantaLucia J Jr. Nearest-neighbor thermodynamics of internal A.C mismatches in DNA: sequence dependence and pH effects. Biochemistry 1998;37:9435-44.
-
(1998)
Biochemistry
, vol.37
, pp. 9435-9444
-
-
Allawi, H.T.1
SantaLucia Jr., J.2
-
6
-
-
0032102940
-
Thermodynamics of internal C.T mismatches in DNA
-
Allawi HT, SantaLucia J Jr. Thermodynamics of internal C.T mismatches in DNA. Nucleic Acids Res 1998;26:2694-701.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 2694-2701
-
-
Allawi, H.T.1
SantaLucia Jr., J.2
-
7
-
-
0032562140
-
Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA
-
Allawi HT, SantaLucia J Jr. Nearest neighbor thermodynamic parameters for internal G.A mismatches in DNA. Biochemistry 1998;37:2170-9.
-
(1998)
Biochemistry
, vol.37
, pp. 2170-2179
-
-
Allawi, H.T.1
SantaLucia Jr., J.2
-
8
-
-
0034194135
-
Thermodynamic parameters for DNA sequences with dangling ends
-
Bommarito S, Peyret N, SantaLucia J Jr. Thermodynamic parameters for DNA sequences with dangling ends. Nucleic Acids Res 2000;28:1929-34.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 1929-1934
-
-
Bommarito, S.1
Peyret, N.2
SantaLucia Jr., J.3
-
10
-
-
3042735602
-
Prediction of hybridization and melting for double-stranded nucleic acids
-
Dimitrov RA, Zuker M. Prediction of hybridization and melting for double-stranded nucleic acids. Biophys J 2004;87:215-26.
-
(2004)
Biophys J
, vol.87
, pp. 215-226
-
-
Dimitrov, R.A.1
Zuker, M.2
-
11
-
-
0033596964
-
-
Peyret N, Seneviratne PA, Allawi HT, SantaLucia J Jr. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry 1999;38:3468-77.
-
Peyret N, Seneviratne PA, Allawi HT, SantaLucia J Jr. Nearest-neighbor thermodynamics and NMR of DNA sequences with internal A.A, C.C, G.G, and T.T mismatches. Biochemistry 1999;38:3468-77.
-
-
-
-
12
-
-
0032539693
-
A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics
-
SantaLucia J Jr. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. Proc Natl Acad Sci USA 1998;95:1460-5.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 1460-1465
-
-
SantaLucia Jr., J.1
-
13
-
-
2642579966
-
Thermodynamic parameters based on a nearest-neighbor model for DNA sequences with a single-bulge loop
-
Tanaka F, Kameda A, Yamamoto M, Ohuchi A. Thermodynamic parameters based on a nearest-neighbor model for DNA sequences with a single-bulge loop. Biochemistry 2004;43:7143-50.
-
(2004)
Biochemistry
, vol.43
, pp. 7143-7150
-
-
Tanaka, F.1
Kameda, A.2
Yamamoto, M.3
Ohuchi, A.4
-
14
-
-
2442766122
-
-
Schutz E, von Ahsen N. Spreadsheet software for thermodynamic melting point prediction of oligonucleotide hybridization with and without mismatches. Biotechniques 1999;27:1218-22, 24.
-
Schutz E, von Ahsen N. Spreadsheet software for thermodynamic melting point prediction of oligonucleotide hybridization with and without mismatches. Biotechniques 1999;27:1218-22, 24.
-
-
-
-
15
-
-
0001898743
-
Using the nearest neighbor model for the estimation of matched and mismatched hybridization probe melting points and selection of optimal probes on the lightcycler
-
Meurer S, Wittwer C, Nakagawara K, editors, Berlin: Spinger-Verlag
-
von Ahsen N, Schutz E. Using the nearest neighbor model for the estimation of matched and mismatched hybridization probe melting points and selection of optimal probes on the lightcycler. In: Meurer S, Wittwer C, Nakagawara K, editors. Rapid cycle real-time pcr: methods and applications. Vol. 1. Berlin: Spinger-Verlag 2001:43-56.
-
(2001)
Rapid cycle real-time pcr: Methods and applications
, vol.1
, pp. 43-56
-
-
von Ahsen, N.1
Schutz, E.2
-
16
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res 2003;31:3406-15.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
17
-
-
44849113719
-
-
Pont-Kingdon G, Millson A, Lyon E. Molecular haplotyping by real-time PCR. Norfolk, UK: Horizon Scientific Press. In Press.
-
Pont-Kingdon G, Millson A, Lyon E. Molecular haplotyping by real-time PCR. Norfolk, UK: Horizon Scientific Press. In Press.
-
-
-
-
18
-
-
3242742969
-
Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye
-
Zhou L, Myers AN, Vandersteen JG, Wang L, Wittwer CT. Closed-tube genotyping with unlabeled oligonucleotide probes and a saturating DNA dye. Clin Chem 2004;50:1328-35.
-
(2004)
Clin Chem
, vol.50
, pp. 1328-1335
-
-
Zhou, L.1
Myers, A.N.2
Vandersteen, J.G.3
Wang, L.4
Wittwer, C.T.5
-
19
-
-
0034771194
-
Oligonucleotide melting temperatures under PCR conditions: Nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas
-
von Ahsen N, Wittwer CT, Schutz E. Oligonucleotide melting temperatures under PCR conditions: nearest-neighbor corrections for Mg(2+), deoxynucleotide triphosphate, and dimethyl sulfoxide concentrations with comparison to alternative empirical formulas. Clin Chem 2001;47:1956-61.
-
(2001)
Clin Chem
, vol.47
, pp. 1956-1961
-
-
von Ahsen, N.1
Wittwer, C.T.2
Schutz, E.3
-
20
-
-
84908219488
-
Statistical methods for assessing agreement between two methods of clinical measurement
-
Bland JM, Altman DG. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1986;1:307-10.
-
(1986)
Lancet
, vol.1
, pp. 307-310
-
-
Bland, J.M.1
Altman, D.G.2
-
21
-
-
0035403154
-
Two breed-specific bovine MC1-R alleles in Brown Swiss and Saler breeds
-
Kriegesmann B, Dierkes B, Leeb T, Jansen S, Brenig B. Two breed-specific bovine MC1-R alleles in Brown Swiss and Saler breeds. J Dairy Sci 2001;84:1768-71.
-
(2001)
J Dairy Sci
, vol.84
, pp. 1768-1771
-
-
Kriegesmann, B.1
Dierkes, B.2
Leeb, T.3
Jansen, S.4
Brenig, B.5
-
22
-
-
0034641736
-
Complex promoter and coding region beta 2-adrenergic receptor haplotypes alter receptor expression and predict in vivo responsiveness
-
Drysdale CM, McGraw DW, Stack CB, Stephens JC, Judson RS, Nandabalan K, et al. Complex promoter and coding region beta 2-adrenergic receptor haplotypes alter receptor expression and predict in vivo responsiveness. Proc Natl Acad Sci USA 2000;97:10483-8.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 10483-10488
-
-
Drysdale, C.M.1
McGraw, D.W.2
Stack, C.B.3
Stephens, J.C.4
Judson, R.S.5
Nandabalan, K.6
-
23
-
-
26044455194
-
Haplotyping of TNFalpha gene promoter using melting temperature analysis: Detection of a novel -856(G/A) mutation
-
Song Y, Araki J, Zhang L, Froehlich T, Sawabe M, Arai T, et al. Haplotyping of TNFalpha gene promoter using melting temperature analysis: detection of a novel -856(G/A) mutation. Tissue Antigens 2005; 66:284-90.
-
(2005)
Tissue Antigens
, vol.66
, pp. 284-290
-
-
Song, Y.1
Araki, J.2
Zhang, L.3
Froehlich, T.4
Sawabe, M.5
Arai, T.6
-
24
-
-
24144490661
-
Direct molecular haplotyping of the IVS-8 poly(TG) and polyT repeat tracts in the cystic fibrosis gene by melting curve analysis of hybridization probes
-
Millson A, Pont-Kingdon G, Page S, Lyon E. Direct molecular haplotyping of the IVS-8 poly(TG) and polyT repeat tracts in the cystic fibrosis gene by melting curve analysis of hybridization probes. Clin Chem 2005;51:1619-23.
-
(2005)
Clin Chem
, vol.51
, pp. 1619-1623
-
-
Millson, A.1
Pont-Kingdon, G.2
Page, S.3
Lyon, E.4
-
25
-
-
0033636291
-
DNA base bulge vs unmatched end formation in probebased diagnostic insertion/deletion genotyping: Genotyping the UGT1A1 (TA)(n) polymorphism by real-time fluorescence PCR
-
von Ahsen N, Oellerich M, Schutz E. DNA base bulge vs unmatched end formation in probebased diagnostic insertion/deletion genotyping: genotyping the UGT1A1 (TA)(n) polymorphism by real-time fluorescence PCR. Clin Chem 2000;46:1939-45.
-
(2000)
Clin Chem
, vol.46
, pp. 1939-1945
-
-
von Ahsen, N.1
Oellerich, M.2
Schutz, E.3
-
26
-
-
28444449081
-
Nucleophosmin gene mutations are predictors of favorable prognosis in acute myelogenous leukemia with a normal karyotype
-
Schnittger S, Schoch C, Kern W, Mecucci C, Tschulik C, Martelli MF, et al. Nucleophosmin gene mutations are predictors of favorable prognosis in acute myelogenous leukemia with a normal karyotype. Blood 2005;106:3733-9.
-
(2005)
Blood
, vol.106
, pp. 3733-3739
-
-
Schnittger, S.1
Schoch, C.2
Kern, W.3
Mecucci, C.4
Tschulik, C.5
Martelli, M.F.6
-
27
-
-
0034934775
-
Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies
-
Douglas JA, Boehnke M, Gillanders E, Trent JM, Gruber SB. Experimentally-derived haplotypes substantially increase the efficiency of linkage disequilibrium studies. Nat Genet 2001;28:361-4.
-
(2001)
Nat Genet
, vol.28
, pp. 361-364
-
-
Douglas, J.A.1
Boehnke, M.2
Gillanders, E.3
Trent, J.M.4
Gruber, S.B.5
-
28
-
-
0942298156
-
Power of direct vs. indirect haplotyping in association studies
-
Thomas S, Porteous D, Visscher PM. Power of direct vs. indirect haplotyping in association studies. Genet Epidemiol 2004;26:116-24.
-
(2004)
Genet Epidemiol
, vol.26
, pp. 116-124
-
-
Thomas, S.1
Porteous, D.2
Visscher, P.M.3
-
29
-
-
0036216741
-
Molecular haplotyping of genomic DNA for multiple single-nucleotide polymorphisms located kilobases apart using long-range polymerase chain reaction and intramolecular ligation
-
McDonald OG, Krynetski EY, Evans WE. Molecular haplotyping of genomic DNA for multiple single-nucleotide polymorphisms located kilobases apart using long-range polymerase chain reaction and intramolecular ligation. Pharmacogenetics 2002;12:93-9.
-
(2002)
Pharmacogenetics
, vol.12
, pp. 93-99
-
-
McDonald, O.G.1
Krynetski, E.Y.2
Evans, W.E.3
-
30
-
-
33644876042
-
Unlabeled oligonucleotide probes modified with locked nucleic acids for improved mismatch discrimination in genotyping by melting analysis
-
passim
-
Chou LS, Meadows C, Wittwer CT, Lyon E. Unlabeled oligonucleotide probes modified with locked nucleic acids for improved mismatch discrimination in genotyping by melting analysis. Biotechniques 2005;39:644, 6, 8 passim.
-
(2005)
Biotechniques
, vol.39
-
-
Chou, L.S.1
Meadows, C.2
Wittwer, C.T.3
Lyon, E.4
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