메뉴 건너뛰기




Volumn 8, Issue 6, 2008, Pages 803-814

A DNA sensor for sequencing and mismatches based on electron transport through Watson-Crick and non-Watson-Crick base pairs

Author keywords

DNA sequencing; Molecular electronics; Molecular electrostatic potential (MEP); Nanotechnology

Indexed keywords

CHARGED PARTICLES; CURRENT DENSITY; DENSITY FUNCTIONAL THEORY; DIFFERENTIAL EQUATIONS; DNA; ELECTRIC POTENTIAL; ELECTRONS; GENES; GREEN'S FUNCTION; METALLIZING; MICROFLUIDICS; MOLECULES; NANOSTRUCTURED MATERIALS; NUCLEIC ACIDS; ORGANIC ACIDS; PROBABILITY DENSITY FUNCTION; SCANNING; TRANSFER FUNCTIONS;

EID: 44649171571     PISSN: 1530437X     EISSN: None     Source Type: Journal    
DOI: 10.1109/JSEN.2008.923232     Document Type: Article
Times cited : (22)

References (61)
  • 1
    • 24144452465 scopus 로고    scopus 로고
    • Aqueous computing with DNA hairpin-based RAM
    • N. Takahashi, A. Kameda, M. Yamamoto, and A. Ohuchi, "Aqueous computing with DNA hairpin-based RAM," DNA Computing, vol. 3384, pp. 355-364, 2005.
    • (2005) DNA Computing , vol.3384 , pp. 355-364
    • Takahashi, N.1    Kameda, A.2    Yamamoto, M.3    Ohuchi, A.4
  • 3
    • 33749985208 scopus 로고    scopus 로고
    • Hairpin-DNA memory using molecular addressing
    • Nov
    • M. Takinoue and A. Suyama, "Hairpin-DNA memory using molecular addressing," Small, vol. 2, pp. 1244-1247, Nov. 2006.
    • (2006) Small , vol.2 , pp. 1244-1247
    • Takinoue, M.1    Suyama, A.2
  • 4
    • 0038786967 scopus 로고    scopus 로고
    • DNA electronics - DNA and electronics seem to be two different things, but a series of events has highlighted the unusual ability of DNA to form electronic components,
    • May
    • V. Bhalla, R. P. Bajpai, and L. M. Bharadwaj, "DNA electronics - DNA and electronics seem to be two different things, but a series of events has highlighted the unusual ability of DNA to form electronic components," Embo Reports, vol. 4, pp. 442-445, May 2003.
    • (2003) Embo Reports , vol.4 , pp. 442-445
    • Bhalla, V.1    Bajpai, R.P.2    Bharadwaj, L.M.3
  • 5
    • 0002700801 scopus 로고    scopus 로고
    • Computing with DNA
    • Aug
    • L. M. Adleman, "Computing with DNA," Scientific Amer., vol. 279, pp. 54-61, Aug. 1998.
    • (1998) Scientific Amer , vol.279 , pp. 54-61
    • Adleman, L.M.1
  • 6
    • 0017681196 scopus 로고
    • DNA Sequencing with chain-terminating inhibitors
    • F. Sanger, S. Nicklen, and A. R. Coulson, "DNA Sequencing with chain-terminating inhibitors," in Proc. Natl. Acad. Sci. USA, 1977, vol. 74, pp. 5463-5467.
    • (1977) Proc. Natl. Acad. Sci. USA , vol.74 , pp. 5463-5467
    • Sanger, F.1    Nicklen, S.2    Coulson, A.R.3
  • 9
    • 2042437650 scopus 로고    scopus 로고
    • E. S. Lander, L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subra manian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Water ston, R. K. Wilson, L. W. Hillier, J. D. McPherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J
    • E. S. Lander, L. M. Linton, B. Birren, C. Nusbaum, M. C. Zody, J. Baldwin, K. Devon, K. Dewar, M. Doyle, W. FitzHugh, R. Funke, D. Gage, K. Harris, A. Heaford, J. Howland, L. Kann, J. Lehoczky, R. LeVine, P. McEwan, K. McKernan, J. Meldrim, J. P. Mesirov, C. Miranda, W. Morris, J. Naylor, C. Raymond, M. Rosetti, R. Santos, A. Sheridan, C. Sougnez, N. Stange-Thomann, N. Stojanovic, A. Subra manian, D. Wyman, J. Rogers, J. Sulston, R. Ainscough, S. Beck, D. Bentley, J. Burton, C. Clee, N. Carter, A. Coulson, R. Deadman, P. Deloukas, A. Dunham, I. Dunham, R. Durbin, L. French, D. Grafham, S. Gregory, T. Hubbard, S. Humphray, A. Hunt, M. Jones, C. Lloyd, A. McMurray, L. Matthews, S. Mercer, S. Milne, J. C. Mullikin, A. Mungall, R. Plumb, M. Ross, R. Shownkeen, S. Sims, R. H. Water ston, R. K. Wilson, L. W. Hillier, J. D. McPherson, M. A. Marra, E. R. Mardis, L. A. Fulton, A. T. Chinwalla, K. H. Pepin, W. R. Gish, S. L. Chissoe, M. C. Wendl, K. D. Delehaunty, T. L. Miner, A. Delehaunty, J. B. Kramer, L. L. Cook, R. S. Fulton, D. L. Johnson, P. J. Minx, S. W. Clifton, T. Hawkins, E. Branscomb, P. Predki, P. Richardson, S. Wenning, T. Slezak, N. Doggett, J. F. Cheng, A. Olsen, S. Lucas, C. Elkin, E. Uberbacher, M. Frazier, R. A. Gibbs, D. M. Muzny, S. E. Scherer, J. B. Bouck, E. J. Sodergren, K. C. Worley, C. M. Rives, J. H. Gorrell, M. L. Metzker, S. L. Naylor, R. S. Kucherlapati, D. L. Nelson, G. M. Weinstock, Y. Sakaki, A. Fujiyama, M. Hattori, T. Yada, A. Toyoda, T. Itoh, C. Kawagoe, H. Watanabe, Y. Totoki, T. Taylor, J. Weissenbach, R. Heilig, W. Saurin, F. Artiguenave, P. Brottier, T. Bruls, E. Pelletier, C. Robert, P. Wincker, A. Rosenthal, M. Platzer, G. Nyakatura, S. Taudien, A. Rump, H. M. Yang, J. Yu, J. Wang, G. Y. Huang, J. Gu, L. Hood, L. Rowen, A. Madan, S. Z. Qin, R. W. Davis, N. A. Federspiel, A. P. Abola, M. J. Proctor, R. M. Myers, J. Schmutz, M. Dickson, J. Grimwood, D. R.Cox, M. V. Olson, R. Kaul, C. Raymond, N. Shimizu, K. Kawasaki, S. Minoshima, G. A. Evans, M. Athanasiou, R. Schultz, B. A. Roe, F. Chen, H. Q. Pan, J. Ramser, H. Lehrach, R. Reinhardt, W. R. McCombie, M. de la Bastide, N. Dedhia, H. Blocker, K. Hornischer, G. Nordsiek,R.Agarwala, L.Aravind,J. A. Bailey, A.Bateman,S. Batzoglou, E. Birney, P. Bork, D. G. Brown, C. B. Burge, L. Cerutti, H. C. Chen, D. Church, M. Clamp, R. R. Copley, T. Doerks, S. R. Eddy, E. E. Eichler, T. S. Furey, J. Galagan, J. G. R. Gilbert, C. Harmon, Y. Hayashizaki, D. Haussler, H. Hermjakob, K. Hokamp, W. H. Jang, L. S. Johnson, T. A. Jones, S. Kasif, A. Kaspryzk, S. Kennedy, W. J. Kent, P. Kitts, E. V. Koonin, I. Korf, D. Kulp, D. Lancet, T. M. Lowe, A. McLysaght, T. Mikkelsen, J. V. Moran, N. Mulder, V. J. Pollara, C. P. Ponting, G. Schuler, J. R. Schultz, G. Slater, A. F. A. Smit, E. Stupka, J. Szustakowki, D. Thierry-Mieg, J. Thierry-Mieg, L. Wagner, J. Wallis, R. Wheeler, A. Williams, Y. I. Wolf, K. H. Wolfe, S. P. Yang, R. F. Yeh, F. Collins, M. S. Guyer, J. Peterson, A. Felsenfeld, K. A. Wetterstrand, A. Patrinos, M. J. Morgan, and I. H. G. S. Conso, "Initial sequencing and analysis of the human genome," Nature, vol. 409, pp. 860-921, Feb. 15, 2001.
  • 10
    • 33645072440 scopus 로고    scopus 로고
    • R. F. Service, Gene sequencing - The race for the $1000 Genome, Science, 311, pp. 1544-1546, Mar. 17, 2006.
    • R. F. Service, "Gene sequencing - The race for the $1000 Genome," Science, vol. 311, pp. 1544-1546, Mar. 17, 2006.
  • 11
    • 44649177360 scopus 로고    scopus 로고
    • Available
    • [Online]. Available: http://www.genome.gov/10000368#6
  • 12
    • 33646555429 scopus 로고    scopus 로고
    • Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing
    • May 9
    • R. G. Blazej, P. Kumaresan, and R. A. Mathies, "Microfabricated bioprocessor for integrated nanoliter-scale Sanger DNA sequencing," in Proc. Natl. Acad. Sci. USA, May 9, 2006, vol. 103, pp. 7240-7245.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 7240-7245
    • Blazej, R.G.1    Kumaresan, P.2    Mathies, R.A.3
  • 13
    • 0030465241 scopus 로고    scopus 로고
    • Characterization of individual polynucleotide molecules using a membrane channel
    • J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, "Characterization of individual polynucleotide molecules using a membrane channel," in Proc. Natl. Acad. Sci. USA, Nov 26, 1996, vol. 93, pp. 13770-13773.
    • (1996) Proc. Natl. Acad. Sci. USA, Nov 26 , vol.93 , pp. 13770-13773
    • Kasianowicz, J.J.1    Brandin, E.2    Branton, D.3    Deamer, D.W.4
  • 14
    • 0034177819 scopus 로고    scopus 로고
    • Nanopores and nucleic acids: Prospects for ultrarapid sequencing
    • Apr
    • D. W. Deamer and M. Akeson, "Nanopores and nucleic acids: Prospects for ultrarapid sequencing," Trends in Biotechnology, vol. 18, pp. 147-151, Apr. 2000.
    • (2000) Trends in Biotechnology , vol.18 , pp. 147-151
    • Deamer, D.W.1    Akeson, M.2
  • 15
    • 44649163609 scopus 로고    scopus 로고
    • Nanopore analysis of nucleic acids
    • Mar
    • D. Branton and P. Leroy, "Nanopore analysis of nucleic acids," Biofutur, vol. 220, pp. IV-II, Mar. 2002.
    • (2002) Biofutur , vol.220
    • Branton, D.1    Leroy, P.2
  • 16
    • 0036674122 scopus 로고    scopus 로고
    • Single molecule measurements of DNA transport through a nanopore
    • Aug
    • A. Meller and D. Branton, "Single molecule measurements of DNA transport through a nanopore," Electrophoresis, vol. 23, pp. 2583-2591, Aug. 2002.
    • (2002) Electrophoresis , vol.23 , pp. 2583-2591
    • Meller, A.1    Branton, D.2
  • 18
    • 31044443423 scopus 로고    scopus 로고
    • Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor
    • Feb
    • M. E. Gracheva, A. L. Xiong, A. Aksimentiev, K. Schulten, G. Timp, and J.P. Leburton, "Simulation of the electric response of DNA translocation through a semiconductor nanopore-capacitor," Nanotechnology, vol. 17, pp. 622-633, Feb. 2006.
    • (2006) Nanotechnology , vol.17 , pp. 622-633
    • Gracheva, M.E.1    Xiong, A.L.2    Aksimentiev, A.3    Schulten, K.4    Timp, G.5    Leburton, J.P.6
  • 19
    • 0034628434 scopus 로고    scopus 로고
    • Direct measurement of electrical transport through DNA molecules
    • Feb
    • D. Porath, A. Bezryadin, S. de Vries, and C. Dekker, "Direct measurement of electrical transport through DNA molecules," Nature, vol. 403, pp. 635-638, Feb. 2000.
    • (2000) Nature , vol.403 , pp. 635-638
    • Porath, D.1    Bezryadin, A.2    de Vries, S.3    Dekker, C.4
  • 20
    • 0041698328 scopus 로고    scopus 로고
    • Visualization of detailed structures within DNA
    • Aug
    • H. Tanaka and T. Kawai, "Visualization of detailed structures within DNA," Surface Sci., vol. 539, pp. L531-L536, Aug. 2003.
    • (2003) Surface Sci , vol.539
    • Tanaka, H.1    Kawai, T.2
  • 21
    • 33744796966 scopus 로고    scopus 로고
    • Conformation and local environment dependent conductance of DNA molecules
    • Dec
    • M. S. Xu, R. G. Endres, S. Tsukamoto, M. Kitamura, S. Ishida, and Y. Arakawa, "Conformation and local environment dependent conductance of DNA molecules," Small, vol. 1, pp. 1168-1172, Dec. 2005.
    • (2005) Small , vol.1 , pp. 1168-1172
    • Xu, M.S.1    Endres, R.G.2    Tsukamoto, S.3    Kitamura, M.4    Ishida, S.5    Arakawa, Y.6
  • 22
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids - A structure for deoxyribose nucleic acid
    • J. D. Watson and F. H. C. Crick, "Molecular structure of nucleic acids - A structure for deoxyribose nucleic acid," Nature, vol. 171, pp. 737-738, 1953.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.C.2
  • 23
    • 0030924437 scopus 로고    scopus 로고
    • Hydrogen bonding revisited: Geometric selection as a principal determinant of DNA replicationfidelity
    • Sep. 30
    • M. F. Goodman, "Hydrogen bonding revisited: Geometric selection as a principal determinant of DNA replicationfidelity," in Proc. Natl. Acad. Sci. USA, Sep. 30, 1997, vol. 94, pp. 10493-10495.
    • (1997) Proc. Natl. Acad. Sci. USA , vol.94 , pp. 10493-10495
    • Goodman, M.F.1
  • 24
    • 33744470857 scopus 로고    scopus 로고
    • Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs
    • P. Jurecka, J. Sponer, J. Cerny, and P. Hobza, "Benchmark database of accurate (MP2 and CCSD(T) complete basis set limit) interaction energies of small model complexes, DNA base pairs, and amino acid pairs," Phys. Chem. Chem. Phys., vol. 8, pp. 1985-1993, 2006.
    • (2006) Phys. Chem. Chem. Phys , vol.8 , pp. 1985-1993
    • Jurecka, P.1    Sponer, J.2    Cerny, J.3    Hobza, P.4
  • 26
  • 27
    • 0025160871 scopus 로고
    • The fidelity of DNA-synthesis catalyzed by derivatives of escherichia-coli DNA-polymerase-I
    • Aug. 15
    • K. Bebenek, C. M. Joyce, M. P. Fitzgerald, and T. A. Kunkel, "The fidelity of DNA-synthesis catalyzed by derivatives of escherichia-coli DNA-polymerase-I," J. Biol. Chem., vol. 265, pp. 13878-13887, Aug. 15, 1990.
    • (1990) J. Biol. Chem , vol.265 , pp. 13878-13887
    • Bebenek, K.1    Joyce, C.M.2    Fitzgerald, M.P.3    Kunkel, T.A.4
  • 29
    • 0034700502 scopus 로고    scopus 로고
    • Pairing of isolated nucleic-acid bases in the abscence of the DNA backbone
    • Dec. 21/28
    • E. Nir, K. Kleinermanns, and M. S. d. Vries, "Pairing of isolated nucleic-acid bases in the abscence of the DNA backbone," Nature, vol. 408, pp. 949-951, Dec. 21/28, 2000.
    • (2000) Nature , vol.408 , pp. 949-951
    • Nir, E.1    Kleinermanns, K.2    Vries, M.S.D.3
  • 30
    • 0036769055 scopus 로고    scopus 로고
    • Properties of isolated DNA bases, base pairs and nucleosides examined by laser spectroscopy
    • E. Nir, C. Plutzer, K. Kleinermanns, and M. S. d. Vries, "Properties of isolated DNA bases, base pairs and nucleosides examined by laser spectroscopy," Eur. Phys. J. D, vol. 20, pp. 317-329, 2002.
    • (2002) Eur. Phys. J. D , vol.20 , pp. 317-329
    • Nir, E.1    Plutzer, C.2    Kleinermanns, K.3    Vries, M.S.D.4
  • 31
    • 0035961580 scopus 로고    scopus 로고
    • A DNA polymerase with specificity for five base pairs
    • A. K. Showalter and M.-D. Tsai, "A DNA polymerase with specificity for five base pairs," J. Amer. Chem. Soc., vol. 123, pp. 1776-1777, 2000.
    • (2000) J. Amer. Chem. Soc , vol.123 , pp. 1776-1777
    • Showalter, A.K.1    Tsai, M.-D.2
  • 32
    • 33846000677 scopus 로고    scopus 로고
    • Electron transport in nano-gold--silicon interfaces
    • L. Yan and J. M. Seminario, "Electron transport in nano-gold--silicon interfaces," Int. J. Quantum Chem., vol. 107, pp. 440-450, 2007.
    • (2007) Int. J. Quantum Chem , vol.107 , pp. 440-450
    • Yan, L.1    Seminario, J.M.2
  • 33
    • 33847183876 scopus 로고    scopus 로고
    • Field induced con-formational changes in bimetallic oligoaniline junctions
    • 13 pages
    • J. A. Sotelo,L. Yan,M. Wang, and J. M.Seminario, "Field induced con-formational changes in bimetallic oligoaniline junctions,"Phys. Rev. A, vol. 75, p. 022511, 2007, (13 pages).
    • (2007) Phys. Rev. A , vol.75 , pp. 022511
    • Sotelo, J.A.1    Yan, L.2    Wang, M.3    Seminario, J.M.4
  • 34
    • 44649130423 scopus 로고    scopus 로고
    • Metal-Molecule-Semiconductor Junctions: An Ab Initio Analysis
    • J. M. Seminario, Ed. Amsterdam, The Netherlands: Elsevier
    • L. A. Agapito and J. M. Seminario, "Metal-Molecule-Semiconductor Junctions: An Ab Initio Analysis," in Molecular and Nano Electronics: Analysis, Design and Simulation, J. M. Seminario, Ed. Amsterdam, The Netherlands: Elsevier, 2006, vol. 17, pp. 1-54.
    • (2006) Molecular and Nano Electronics: Analysis, Design and Simulation , vol.17 , pp. 1-54
    • Agapito, L.A.1    Seminario, J.M.2
  • 35
    • 23844510890 scopus 로고    scopus 로고
    • Electronic structure and electron transport characteristics of a cobalt complex
    • L.Yan and J. M.Seminario, "Electronic structure and electron transport characteristics of a cobalt complex," J. Phys. Chem. A, vol. 109, pp. 6628-6633, 2005.
    • (2005) J. Phys. Chem. A , vol.109 , pp. 6628-6633
    • Yan, L.1    Seminario, J.M.2
  • 36
    • 26444442487 scopus 로고    scopus 로고
    • Scenarios for molecular-level signal processing
    • J. M. Seminario, L. Yan, and Y. Ma, "Scenarios for molecular-level signal processing," Proc. IEEE, vol. 93, pp. 1753-1764, 2005.
    • (2005) Proc. IEEE , vol.93 , pp. 1753-1764
    • Seminario, J.M.1    Yan, L.2    Ma, Y.3
  • 37
    • 17644366835 scopus 로고    scopus 로고
    • Ab initio analysis of electron currents in thioalkanes
    • J. M. Seminario and L. Yan, "Ab initio analysis of electron currents in thioalkanes," Int. J. Quantum Chem., vol. 102, pp. 711-723, 2005.
    • (2005) Int. J. Quantum Chem , vol.102 , pp. 711-723
    • Seminario, J.M.1    Yan, L.2
  • 39
    • 0344012213 scopus 로고    scopus 로고
    • A programmable molecular diode driven by charge-induced conformational changes
    • P. A. Derosa, S. Guda, and J. M. Seminario, "A programmable molecular diode driven by charge-induced conformational changes," J. Amer. Chem. Soc., vol. 125, pp. 14240-14241, 2003.
    • (2003) J. Amer. Chem. Soc , vol.125 , pp. 14240-14241
    • Derosa, P.A.1    Guda, S.2    Seminario, J.M.3
  • 40
    • 0037154335 scopus 로고    scopus 로고
    • Analysis of a dinitro-based molecular device
    • J. M. Seminario, A. G. Zacarias, and P. A. Derosa, "Analysis of a dinitro-based molecular device," J. Chem. Phys., vol. 116, pp. 1671-1683, 2002.
    • (2002) J. Chem. Phys , vol.116 , pp. 1671-1683
    • Seminario, J.M.1    Zacarias, A.G.2    Derosa, P.A.3
  • 41
    • 0035135946 scopus 로고    scopus 로고
    • Electron transport through single molecules: Scattering treatment using density functional and green function theories
    • Jan. 18
    • P. A. Derosa and J. M. Seminario, "Electron transport through single molecules: Scattering treatment using density functional and green function theories," J. Phys. Chem. B, vol. 105, pp. 471-481, Jan. 18, 2001.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 471-481
    • Derosa, P.A.1    Seminario, J.M.2
  • 42
    • 0001157949 scopus 로고    scopus 로고
    • Molecular currentvoltage characteristics
    • J. M. Seminario, A. G. Zacarias, and J. M. Tour, "Molecular currentvoltage characteristics," J. Phys. Chem. A, vol. 103, pp. 7883-7887, 1999.
    • (1999) J. Phys. Chem. A , vol.103 , pp. 7883-7887
    • Seminario, J.M.1    Zacarias, A.G.2    Tour, J.M.3
  • 43
    • 44649118363 scopus 로고    scopus 로고
    • M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery, T. Vreven, Jr, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B
    • M. J. Frisch, G. W. Trucks, H. B. Schlegel, G. E. Scuseria, M. A. Robb, J. R. Cheeseman, J. A. Montgomery, T. Vreven, Jr, K. N. Kudin, J. C. Burant, J. M. Millam, S. S. Iyengar, J. Tomasi, V. Barone, B. Mennucci, M. Cossi, G. Scalmani, N. Rega, G. A. Petersson, H. Nakatsuji, M. Hada, M. Ehara, K. Toyota, R. Fukuda, J. Hasegawa, M. Ishida, T. Nakajima, Y. Honda, O. Kitao, H. Nakai, M. Klene, X. Li, J. E. Knox, H. P. Hratchian, J. B. Cross, C. Adamo, J. Jaramillo, R. Gomperts, R. E. Stratmann, O. Yazyev, A. J. Austin, R. Cammi, C. Pomelli, J. W. Ochterski, P. Y. Ayala, K. Morokuma, G. A. Voth, P. Salvador, J. J. Dannenberg, V. G. Zakrzewski, S. Dapprich, A. D. Daniels, M. C. Strain, O. Farkas, D. K. Malick, A. D. Rabuck, K. Raghavachari, J. B. Foresman, J. V. Ortiz, Q. Cui, A. G. Baboul, S. Clifford, J. Cioslowski, B. B. Stefanov, G. Liu, A. Liashenko, P. Piskorz, I. Komaromi, R. L. Martin, D. J. Fox, T. Keith, M. A. Al-Laham, C. Y. Peng, A. Nanayakkara, M. Challacombe, P. M. W. Gill, B. Johnson, W. Chen, M. W. Wong, C. Gonzalez, and J. A. Pople, Gaussian-2003, Revision C.2. Pittsburgh, PA: Gaussian, Inc., 2003.
  • 44
    • 0032300804 scopus 로고    scopus 로고
    • Conserved geometrical base-pairing patterns in RNA
    • Nov
    • N. B. Leontis and E. Westhof, "Conserved geometrical base-pairing patterns in RNA," Quart. Rev. Biophys., vol. 31, pp. 399-455, Nov. 1998.
    • (1998) Quart. Rev. Biophys , vol.31 , pp. 399-455
    • Leontis, N.B.1    Westhof, E.2
  • 45
    • 0035010211 scopus 로고    scopus 로고
    • Geometric nomenclature and classification of RNA base pairs
    • N. B. Leontis and E. Westhof, "Geometric nomenclature and classification of RNA base pairs," RNA, vol. 7, pp. 499-512, 2001.
    • (2001) RNA , vol.7 , pp. 499-512
    • Leontis, N.B.1    Westhof, E.2
  • 47
    • 10644250257 scopus 로고
    • Inhomogeneous electron gas
    • P. Hohenberg and W. Kohn, "Inhomogeneous electron gas," Phys. Rev. B, vol. 136, pp. 864-871, 1964.
    • (1964) Phys. Rev. B , vol.136 , pp. 864-871
    • Hohenberg, P.1    Kohn, W.2
  • 48
    • 0042113153 scopus 로고
    • Self-consistent equations including exchange and correlation effects
    • W. Kohn and L. J. Sham, "Self-consistent equations including exchange and correlation effects," Phys. Rev. A, vol. 140, pp. 1133-1138, 1965.
    • (1965) Phys. Rev. A , vol.140 , pp. 1133-1138
    • Kohn, W.1    Sham, L.J.2
  • 49
    • 0000189651 scopus 로고
    • Density-functional thermochemistry III. The role of exact exchange
    • A. D. Becke, "Density-functional thermochemistry III. The role of exact exchange," J. Chem. Phys., vol. 98, pp. 5648-5652, 1993.
    • (1993) J. Chem. Phys , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 50
    • 23244460838 scopus 로고
    • Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation
    • J. P. Perdew, J. A. Chevary, S. H. Vosko, K. A. Jackson, M. R. Pederson, D. J. Singh, and C. Fiolhais, "Atoms, molecules, solids, and surfaces: Applications of the generalized gradient approximation for exchange and correlation," Phys. Rev. B, vol. 46, pp. 6671-6687, 1992.
    • (1992) Phys. Rev. B , vol.46 , pp. 6671-6687
    • Perdew, J.P.1    Chevary, J.A.2    Vosko, S.H.3    Jackson, K.A.4    Pederson, M.R.5    Singh, D.J.6    Fiolhais, C.7
  • 51
    • 33645898818 scopus 로고
    • Accurate and simple analytic representation of the electron-gas correlation energy
    • J. P. Perdew and Y. Wang, "Accurate and simple analytic representation of the electron-gas correlation energy," Phys. Rev. B, vol. 45, pp. 13244-13249, 1992.
    • (1992) Phys. Rev. B , vol.45 , pp. 13244-13249
    • Perdew, J.P.1    Wang, Y.2
  • 52
    • 0006073669 scopus 로고
    • Ab initio effective core potentials for molecular calculations. Potentials for main group elements Na to Bi
    • W. R. Wadt and P. J. Hay, "Ab initio effective core potentials for molecular calculations. Potentials for main group elements Na to Bi," J. Chem. Phys., vol. 82, pp. 284-298, 1985.
    • (1985) J. Chem. Phys , vol.82 , pp. 284-298
    • Wadt, W.R.1    Hay, P.J.2
  • 53
    • 27344448074 scopus 로고
    • Ab initio effective core potentials for molecular calculations. Potentials for K to Au including the outermost core orbitals
    • P.J.Hay and W.R.Wadt, "Ab initio effective core potentials for molecular calculations. Potentials for K to Au including the outermost core orbitals," J. Chem. Phys., vol. 82, pp. 299-310, 1985.
    • (1985) J. Chem. Phys , vol.82 , pp. 299-310
    • Hay, P.J.1    Wadt, W.R.2
  • 54
    • 33745770836 scopus 로고
    • Ab initio effective core potentials for molecular calculations. Potentials for the transition metal atoms Sc to Hg
    • P.J.Hay and W.R.Wadt, "Ab initio effective core potentials for molecular calculations. Potentials for the transition metal atoms Sc to Hg," J. Chem. Phys., vol. 82, pp. 270-283, 1985.
    • (1985) J. Chem. Phys , vol.82 , pp. 270-283
    • Hay, P.J.1    Wadt, W.R.2
  • 55
    • 33847183876 scopus 로고    scopus 로고
    • Field-induced conformational changes in bimetallic oligoaniline junctions
    • Feb
    • J. C. Sotelo, L. M. Yan, M. Wang, and J. M. Seminario, "Field-induced conformational changes in bimetallic oligoaniline junctions," Phys. Rev. A, vol. 75, Feb. 2007.
    • (2007) Phys. Rev. A , vol.75
    • Sotelo, J.C.1    Yan, L.M.2    Wang, M.3    Seminario, J.M.4
  • 56
    • 33846000677 scopus 로고    scopus 로고
    • Electron transport in nano-gold-silicon interfaces
    • Feb
    • L. M. Yan and J. M. Seminario, "Electron transport in nano-gold-silicon interfaces," Int. J. Quantum Chem., vol. 107, pp. 440-450, Feb. 2007.
    • (2007) Int. J. Quantum Chem , vol.107 , pp. 440-450
    • Yan, L.M.1    Seminario, J.M.2
  • 57
    • 42749105038 scopus 로고    scopus 로고
    • Combined Monte Carlo and quantum mechanics study of the hydration of the guanine-cytosine base pair
    • Jun
    • K. Coutinho, V. Ludwig, and S. Canuto, "Combined Monte Carlo and quantum mechanics study of the hydration of the guanine-cytosine base pair," Phys. Rev. E, vol. 69, p. 061902, Jun. 2004.
    • (2004) Phys. Rev. E , vol.69 , pp. 061902
    • Coutinho, K.1    Ludwig, V.2    Canuto, S.3
  • 58
    • 0035928126 scopus 로고    scopus 로고
    • Potential energy and free energy surfaces of all ten canonical and methylated nucleic acid base pairs: Molecular dynamics and quantum chemical ab initio studies
    • Jun. 21
    • M. Kabelac and P. Hobza, "Potential energy and free energy surfaces of all ten canonical and methylated nucleic acid base pairs: Molecular dynamics and quantum chemical ab initio studies," J. Phys. Chem. B, vol. 105, pp. 5804-5817, Jun. 21, 2001.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 5804-5817
    • Kabelac, M.1    Hobza, P.2
  • 59
    • 12344332502 scopus 로고    scopus 로고
    • Electron-correlated and density functional studies on hydrogen-bonded proton transfer in adenine-thymine base pair of DNA
    • Feb. 14
    • N. Shimizu, S. Kawano, and M. Tachikawa, "Electron-correlated and density functional studies on hydrogen-bonded proton transfer in adenine-thymine base pair of DNA," J. Molecular Structure, vol. 735-36, pp. 243-248, Feb. 14, 2005.
    • (2005) J. Molecular Structure , vol.735 -36 , pp. 243-248
    • Shimizu, N.1    Kawano, S.2    Tachikawa, M.3
  • 61
    • 0035135946 scopus 로고    scopus 로고
    • Electron transport through single molecules: Scattering treatment using density functional and green function theories
    • Jan. 18
    • P. A. Derosa and J. M. Seminario, "Electron transport through single molecules: Scattering treatment using density functional and green function theories," J. Phys. Chem. B, vol. 105, pp. 471-481, Jan. 18, 2001.
    • (2001) J. Phys. Chem. B , vol.105 , pp. 471-481
    • Derosa, P.A.1    Seminario, J.M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.