Nocardiopsis quinghaiensis sp. nov., isolated from saline soil in China

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 3, 2008, Pages 699-705

  Chen, Yi Guang ^a,b   Cui, Xiao Long ^a   Kroppenstedt, Reiner M ^c   Stackebrandt, Erko ^c   Wen, Meng Liang ^a   Xu, Li Hua ^a   Jiang, Cheng Lin ^a  

^a YUNNAN UNIVERSITY   (China)

^b JISHOU UNIVERSITY   (China)

^c LEIBNIZ INSTITUTE DSMZ GERMAN COLLECTION OF MICROORGANISMS AND CELL CULTURES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CARDIOLIPIN; CYTOSINE; DIAMINOPIMELIC ACID; GUANOSINE; MENAQUINONE; MENAQUINONE 11; PHOSPHATIDYLCHOLINE; PHOSPHATIDYLGLYCEROL; RNA 16S; UNCLASSIFIED DRUG; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; SODIUM CHLORIDE;

AEROBIC BACTERIUM; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; BACTERIUM ISOLATION; CHEMOTAXONOMY; CHINA; DNA CONTENT; DNA DNA HYBRIDIZATION; NEW SPECIES; NOCARDIOIDACEAE; NOCARDIOPSIS AEGYPTIA; NOCARDIOPSIS HALOTOLERANS; NOCARDIOPSIS QUINGHAIENSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SOIL; STRAIN DIFFERENCE; ACTINOMYCETALES; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

MYCELIUM (GENUS); NOCARDIOPSIS; NOCARDIOPSIS AEGYPTIA; NOCARDIOPSIS HALOTOLERANS; POSIBACTERIA;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 44449164645     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65441-0     Document Type: Article

References (48)

1. Al-Tai, A. M. & Ruan, J. S. (1994). Nocardiopsis halophila sp. nov., a new halophilic actinomycete isolated from soil. Int J Syst Bacteriol 44, 474-478.
2. Al-Zarban, S. S., Abbas, I., Al-Musallam, A. A., Steiner, U., Stackebrandt, E. & Kroppenstedt, R. M. (2002). Nocardiopsis halotolerans sp. nov., isolated from salt marsh soil in Kuwait. Int J Syst Evol Microbiol 52, 525-529.
3. Chun, J., Bae, K. S., Moon, E. Y., Jung, S.-O., Lee, H. K. & Kim, S.-J. (2000). Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
4. Cui, X.-L., Mao, P.-H., Zeng, M., Li, W.-J., Zhang, L.-P., Xu, L.-H. & Jiang, C.-L. (2001). Streptomonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
5. Cui, X.-L., Schumann, P., Stackebrandt, E., Kroppenstedt, R. M., Pukall, R., Xu, L.-H., Rohde, M. & Jiang, C.-L. (2004). Myceligenerans xiligouense gen. nov., sp. nov., a novel hyphae-forming member of the family Promicromonosporaceae. Int J Syst Evol Microbiol 54, 1287-1293.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Evtushenko, L. I., Taran, V. V., Akimov, V. N., Kroppenstedt, R. M., Tiedje, J. M. & Stackebrandt, E. (2000). Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev. and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov. Int J Syst Evol Microbiol 50, 73-81.
8. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
9. Felsenstein, J. (1993). PHYLIP (phylogeny inference package), version 3.5c. Distributed by the author. Department of Genome Sciences, University of Washington, Seattle, USA.
10. Grund, E. & Kroppenstedt, R. M. (1990). Chemotaxonomy and numerical taxonomy of the genus Nocardiopsis Meyer 1976. Int J Syst Bacteriol 40, 5-11.
11. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P. & Ward, J. M. (1985). Preparation of chromosomal, plasmid and phage DNA. In Genetic Manipulation of Streptomyces: a Laboratory Manual, pp. 79-80. Norwich: F. Crowe & Sons.
12. Hozzein, W. N., Li, W. J., Ali, M. I. A., Hammouda, O., Mousa, A. S., Xu, L. H. & Jiang, C. L. (2004). Nocardiopsis alkaliphila sp. nov., a novel alkaliphilic actinomycete isolated from desert soil in Egypt. Int J Syst Evol Microbiol 54, 247-252.
13. Huβ, V. A. R., Festl, H. & Schleifer, K. H. (1983). Studies on the spectrophotometric determination of DNA hybridization from renaturation rates. Syst Appl Microbiol 4, 184-192.
14. Jahnke, K. D. (1992). BASIC computer program for evaluation of spectroscopic DNA renaturation data from Gilford System 2600 spectrophotometer on a PC/XT/AT type personal computer. J Microbiol Methods 15, 61-73.
15. Kämpfer, P. & Kroppenstedt, R. M. (1996). Numerical analysis of fatty acid patterns of coryneform bacteria and related taxa. Can J Microbiol 42, 989-1005.
16. Kämpfer, P., Busse, H.-J. & Rainey, F. A. (2002). Nocardiopsis compostus sp. nov., from the atmosphere of a composting facility. Int J Syst Evol Microbiol 52, 621-627.
17. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
18. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
19. Kluge, A. G. & Farris, F. S. (1969). Quantitative phyletics and the evolution of anurans. Syst Zool 18, 1-32.
20. Kroppenstedt, R. M. (1982). Separation of bacterial menaquinones by HPLC using reverse phase (RP18) and a silver loaded ion exchanger. J Liq Chromatogr 5, 2359-2367.
21. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
22. Kroppenstedt, R. M. & Evtushenko, L. I. (2006). The family Nocardiopsaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 754-795. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
23. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
24. Li, M.-G., Li, W.-J., Xu, P., Cui, X.-L., Xu, L.-H. & Jiang, C.-L. (2003). Nocardiopsis xinjiangensis sp. nov., a halophilic actinomycete isolated from saline soil sample in China. Int J Syst Evol Microbiol 53, 317-321.
25. Li, W.-J., Tang, S.-K., Park, D. J., Wang, D., Lee, J. C., Xu, L.-H., Kim, C.-J. & Jiang, C.-L. (2004). Nocardiopsis salina sp. nov., a novel halophilic actinomycete isolated from saline soil in China. Int J Syst Evol Microbiol 54, 1805-1809.
26. Li, W.-J., Chen, H.-H., Kim, C.-J., Park, D.-J., Tang, S.-K., Lee, J.-C., Xu, L.-H. & Jiang, C.-L. (2005a). Microbacterium halotolerans sp. nov., isolated from a saline soil in the west of China. Int J Syst Evol Microbiol 55, 67-70.
27. Li, W.-J., Zhang, Y.-G., Zhang, Y.-Q., Tang, S.-K., Xu, P., Xu, L.-H. & Jiang, C.-L. (2005b). Streptomyces sodiiphilus sp. nov., a novel alkaliphilic actinomycete. Int J Syst Evol Microbiol 55, 1329-1333.
28. Li, W.-J., Schumann, P., Zhang, Y.-Q., Chen, G.-Z., Tian, X.-P., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2005c). Marinococcus halotolerans sp. nov., isolated from Qinghai, north-west China. Int J Syst Evol Microbiol 55, 1801-1804.
29. Li, W.-J., Schumann, P., Zhang, Y.-Q., Xu, P., Chen, G.-Z., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2005d). Proposal of Yaniaceae fam. nov. and Yania flava sp. nov. and emended description of the genus Yania. Int J Syst Evol Microbiol 55, 1933-1938.
30. Li, W.-J., Kroppenstedt, R. M., Wang, D., Tang, S.-K., Lee, J.-C., Park, D.-J., Kim, C.-J., Xu, L.-H. & Jiang, C.-L. (2006). Five novel species of genus Nocardiopsis isolated from hypersaline soils and emended description of Nocardiopsis salina. Int J Syst Evol Microbiol 56, 1089-1096.
31. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance-temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
32. Meyer, J. (1976). Nocardiopsis, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 487-493.
33. Meyer, J. (1994). The genus Nocardiopsis Meyer 1976. In Bergey's Manual of Determinative Bacteriology, 9th edn, pp. 2562-2568. Edited by J. G. Holt, N. R. Krieg, P. H. A. Sneath, J. T. Staley & S. T. Williams. Baltimore: Williams & Wilkins.
34. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
35. Peltola, J. S. P., Andersson, M. A., Kämpfer, P., Auling, G., Kroppenstedt, R. M., Busse, H.-J., Salkinoja-Salonen, M. S. & Rainey, F. A. (2001). Isolation of toxigenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis species, N. exhalans sp. nov. and N. umidischolae sp. nov. Appl Environ Microbiol 67, 4293-4304.
36. Sabry, S. A., Ghanem, N. B., Abu-Ella, G. A., Schumann, P., Stackebrandt, E. & Kroppenstedt, R. M. (2004). Nocardiopsis aegyptia sp. nov., isolated from marine sediment. Int J Syst Evol Microbiol 54, 453-456.
37. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
38. Schippers, A., Bosecker, K., Willscher, S., Spröer, C., Schumann, P. & Kroppenstedt, R. M. (2002). Nocardiopsis metallicus sp. nov., a metal-leaching actinomycete isolated from an alkaline slag dump. Int J Syst Evol Microbiol 52, 2291-2295.
39. Schumann, P., Cui, X., Stackebrandt, E., Kroppenstedt, R. M., Xu, L. & Jiang, C. (2004). Jonesia quinghaiensis sp. nov., a new member of the suborder Micrococcineae. Int J Syst Evol Microbiol 54, 2181-2184.
40. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
41. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
42. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
43. Wayne, L.G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler,O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
44. AL. In Bergey's Manual of Systematic Bacteriology, vol. 4, pp. 2452-2492. Edited by S. T. Williams, M. E. Sharpe & J. G. Holt. Baltimore: Williams & Wilkins.
45. Yassin, A. F., Galinski, E. A., Wohlfarth, A., Jahnke, K.-D., Schaal, K. P. & Trüper, H. G. (1993). A new actinomycete species, Nocardiopsis lucentensis sp. nov. Int J Syst Bacteriol 43, 266-271.
46. Yassin, A. F., Rainey, F. A., Burghardt, J., Gierth, D., Ungerechts, J., Lux, I., Seifert, P., Bal, C. & Schaal, K. P. (1997). Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei. Int J Syst Bacteriol 47, 983-988.
47. Zhang, Y.-Q., Schumann, P., Li, W.-J., Chen, G.-Z., Tian, X.-P., Stackebrandt, E., Xu, L.-H. & Jiang, C.-L. (2005). Isoptericola halotolerans sp. nov., a novel actinobacterium isolated from saline soil from Qinghai Province, north-west China. Int J Syst Evol Microbiol 55, 1867-1870.
48. Zhang, Y.-Q., Schumann, P., Yu, L.-Y., Liu, H.-Y., Zhang, Y.-Q., Xu, L.-H., Stackebrandt, E., Jiang, C.-L. & Li, W.-J. (2007). Zhihengliuella halotolerans gen. nov., sp. nov., a novel member of the family Micrococcaceae. Int J Syst Evol Microbiol 57, 1018-1023.