Nocardiopsis alkaliphila sp. nov., a novel alkaliphilic actinomycete isolated from desert soil in Egypt

International Journal of Systematic and Evolutionary Microbiology

Volumn 54, Issue 1, 2004, Pages 247-252

  Hozzein, Wael N ^a   Li, Wen Jun ^b   Ali, Mohammed Ibrahim A ^a   Hammouda, Ola ^a   Mousa, Ahmed S ^a   Xu, Li Hua ^b   Jiang, Cheng Lin ^b  

^a Beni Suef University   (Egypt)

^b YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; DIAMINOPIMELIC ACID; DNA 16S; MENAQUINONE; PHOSPHOLIPID;

ACTINOBACTERIA; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; CULTURE MEDIUM; DESERT; DNA DETERMINATION; DNA DNA HYBRIDIZATION; EGYPT; GENUS; MYCELIUM; NOCARDIOPSIS ALKALIPHILA; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PHENOTYPE; PHYLOGENY; PRIORITY JOURNAL; SOIL MICROFLORA; SPECIES DIFFERENTIATION; TAXONOMY;

ACTINOMYCETALES; DESERT CLIMATE; DNA, RIBOSOMAL; EGYPT; MICROSCOPY, ELECTRON, SCANNING; MOLECULAR SEQUENCE DATA; PHOSPHOLIPIDS; PHYLOGENY; RNA, RIBOSOMAL, 16S;

ACTINOBACTERIA (CLASS); BACTERIA (MICROORGANISMS); NOCARDIOPSIS; NOCARDIOPSIS ALKALIPHILA; UNCULTURED ACTINOMYCETE;

EID: 0842301639     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.02832-0     Document Type: Article

References (47)

1. Al-Tai, A. M. & Ruan, J.-S. (1994). Nocardiopsis halophila sp. nov., a new halophilic actinomycete isolated from soil. Int J Syst Bacteriol 44, 474-478.
2. Al-Zarban, S. S., Abbas, I., Al-Musallam, A. A., Steiner, U., Stackebrandt E. & Kroppenstedt R. M. (2002). Nocardiopsis halotolerans sp. nov., isolated from salt march soil in Kuwait. Int J Syst Evol Microbiol 52, 525-529.
3. Chun, J., Bae, K. S., Moon, E. Y., Jung, S.-O., Lee, H. K. & Kim, S.-J. (2000). Nocardiopsis kunsanensis sp. nov., a moderately halophilic actinomycete isolated from a saltern. Int J Syst Evol Microbiol 50, 1909-1913.
4. Collins, M. D. (1985). Isoprenoid quinone analysis in bacterial classification and identification. In Chemical Methods in Bacterial Systematics, pp. 267-287. Edited by M. Goodfellow & D. E. Minnikin. London: Academic Press.
5. Cui, X.-L., Mao, P.-H., Zeng, M., Li, W.-J., Zhang, L.-P., Xu, L.-H. & Jiang, C.-L. (2001). Streptimonospora salina gen. nov., sp. nov., a new member of the family Nocardiopsaceae. Int J Syst Evol Microbiol 51, 357-363.
6. De Ley, J., Cattoir, H. & Reynaerts, A. (1970). The quantitative measurement of DNA hybridization from renaturation rates. Eur J Biochem 12, 133-142.
7. Duckworth, A. W., Grant, S., Grant, W. D., Jones, B. E. & Meijer, D. (1998). Dietzia natronolimnaios sp. nov., a new member of the genus Dietzia isolated from an east African soda lake. Extremophiles 2, 359-366.
8. Evtushenko, L. I., Taran, V. V., Akimov, V. N., Kroppenstedt, R. M., Tiedje, J. M. & Stackebrandt E. (2000). Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev. and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov. Int J Syst Evol Microbiol 50, 73-81.
9. Felsenstein, J. (1981). Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17, 368-376.
10. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791.
11. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Bogoriella caseilytica gen. nov., sp. nov., a new alkaliphilic actinomycete from a soda lake in Africa. Int J Syst Bacteriol 47, 788-794.
12. Grund, E. & Kroppenstedt R. M. (1990). Chemotaxonomy and numerical taxonomy of the genus Nocardiopsis Meyer 1976. Int J Syst Bacteriol 40, 5-11.
13. Hasegawa, T., Takizawa, M. & Tanida, S. (1983). A rapid analysis for chemical grouping of aerobic actinomycetes. J Gen Appl Microbiol 29, 319-322.
14. Hopwood, D. A., Bibb, M. J., Chater, K. F., Kieser, T., Bruton, C. J., Kieser, H. M., Lydiate, D. J., Smith, C. P. & Ward, J. M. (1985). Preparation of chromosomal, plasmid and phage DNA. In Genetic Manipulation of Streptomyces - a Laboratory Manual, pp. 79-80. Norwich, UK: F. Crowe & Sons.
15. Jones, K. L. (1949). Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristic. J Bacteriol 57, 141-146.
16. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
17. Kämpfer, P., Busse, H.-J. & Rainey, F. A. (2002). Nocardiopsis compostus sp. nov., from the atmosphere of a composting facility. Int J Syst Evol Microbiol 52, 621-627.
18. Kelly, K. L. (1964). Inter-Society Color Council-National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
19. Kroppenstedt, R. M. (1992). The genus Nocardiopsis. In The Prokaryotes, 2nd edn, pp. 1139-1156. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K.-H. Schleifer. New York: Springer.
20. Kroppenstedt, R. M. & Evtushenko, L. I. (2002). The family Nocardiopsaceae. In The Prokaryotes. A Handbook on the Biology of Bacteria: Ecophysiology, Isolation, Identification, Applications. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
21. Küster, E. & Williams, S. T. (1964). Production of hydrogen sulfide by streptomycetes and methods for its detection. Appl Microbiol 12, 46-52.
22. Labeda, D. P., Testa, R. T., Lechevalier, M. P. & Lechevalier, H. A. (1984). Saccharothrix: a new genus of the Actinomycetales related to Nocardiopsis. Int J Syst Bacteriol 34, 426-431.
23. Lechevalier, M. P. & Lechevalier, H. (1970). Chemical composition as a criterion in the classification of aerobic actinomycetes. Int J Syst Bacteriol 20, 435-443.
24. Lechevalier, M. P. & Lechevalier, H. A. (1980). The chemotaxonomy of actinomycetes. In Actinomycete Taxonomy, pp. 227-291. Edited by A. Dietz & D. W. Thayer. Arlington, VA: Society For Industrial Microbiology.
25. Lechevalier, H. A., Lechevalier, M. P. & Gerber, N. N. (1971). Chemical composition as a criterion in the classification of actinomycetes. Adv Appl Microbiol 14, 47-72.
26. Lechevalier, M. P., De Bièvre, C. & Lechevalier, H. A. (1977). Chemotaxonomy of aerobic actinomycetes: phospholipid composition. Biochem Syst Ecol 5, 249-260.
27. Li, M.-G., Li, W.-J., Xu, P., Cui, X.-L., Xu, L.-H. & Jiang, C.-L. (2003). Nocardiopsis xinjiangensis sp. nov., a halophilic actinomycete isolated from a saline soil sample in China. Int J Syst Evol Microbiol 53, 317-321.
28. Mandel, M. & Marmur, J. (1968). Use of ultraviolet absorbance temperature profile for determining the guanine plus cytosine content of DNA. Methods Enzymol 12B, 195-206.
29. Meyer, J. (1976). Nocardiopsis, a new genus of the order Actinomycetales. Int J Syst Bacteriol 26, 487-493.
30. Mikami, Y., Miyashita, K. & Arai, T. (1982). Diaminopimelic acid profiles of alkalophilic and alkaline-resistant strains of actinomycetes. J Gen Microbiol 128, 1709-1712.
31. Mikami, Y., Miyashita, K. & Arai, T. (1986). Alkaliphilic actinomycetes. Actinomycetes 19, 176-191.
32. Minnikin, D. E., Patel, P. V., Alshamaony, L. & Goodfellow, M. (1977). Polar lipid composition in the classification of Nocardia and related bacteria. Int J Syst Bacteriol 27, 104-117.
33. Miyashita, K., Mikami, Y. & Arai, T. (1984). Alkalophilic actinomycete, Nocardiopsis dassonvillei subsp. prasina subsp. nov., isolated from soil. Int J Syst Bacteriol 34, 405-409.
34. Orsini, M. & Romano-Spica, V. (2001). A microwave-based method for nucleic acid isolation from environmental samples. Lett Appl Microbiol 33, 17-20.
35. Peltola, J. S. P., Andersson, M. A., Kämpfer, P., Auling, G., Kroppenstedt, R. M., Busse, H.-J., Salkinoja-Salonen, M. S. & Rainey, F. A. (2001). Isolation of toxigenic Nocardiopsis strains from indoor environments and description of two new Nocardiopsis species, N. exhalans sp. nov. and N. umidischolae sp. nov. Appl Environ Microbiol 67, 4293-4304.
36. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
37. Sato, M., Beppu, T. & Arima, K. (1983). Studies on antibiotics produced at high alkaline pH. Agric Biol Chem 47, 2019-2027.
38. Schippers, A., Bosecker, K., Willscher, S., Spröer, C., Schumann, P. & Kroppenstedt, R. M. (2002). Nocardiopsis metallicus sp. nov., a metal-leaching actinomycete isolated from an alkaline slag dump. Int J Syst Evol Microbiol 52, 2291-2295.
39. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
40. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
41. Staneck J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
42. Waksman, S. A. (1961). The Actinomycetes, vol. II. Classification, Identification and Descriptions of Genera and Species. Baltimore: Williams & Wilkins.
43. Waksman, S. A. (1967). The Actinomycetes. A Summary of Current Knowledge. New York: Ronald Press.
44. Wayne, L. G., Brenner, D. J., Colwell, R. R. & 9 other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
45. Williams, S. T., Goodfellow, M., Alderson, G., Wellington, E. M. H., Sneath, P. H. A. & Sackin, M. J. (1983). Numerical classification of Streptomyces and related genera. J Gen Microbiol 129, 1743-1813.
46. Yassin, A.- F., Galinski, E. A., Wohlfarth, A., Jahnke, K.-D., Schaal, K. P. & Trüper, H. G. (1993). A new actinomycete species, Nocardiopsis lucentensis sp. nov. Int J Syst Bacteriol 43, 266-271.
47. Yassin, A. F., Rainey, F. A., Burghardt, J., Gierth, D., Ungerechts, J., Lux, I., Seifert, P., Bal, C. & Schaal, K. P. (1997). Description of Nocardiopsis synnemataformans sp. nov., elevation of Nocardiopsis alba subsp. prasina to Nocardiopsis prasina comb. nov., and designation of Nocardiopsis antarctica and Nocardiopsis alborubida as later subjective synonyms of Nocardiopsis dassonvillei. Int J Syst Bacteriol 47, 983-988.