-
1
-
-
0034704396
-
Breakthrough of the year. Genomics comes of age
-
Pennisi E. Breakthrough of the year. Genomics comes of age. Science 290 (2000) 2220-2221
-
(2000)
Science
, vol.290
, pp. 2220-2221
-
-
Pennisi, E.1
-
2
-
-
0000571288
-
Microbial genome sequencing: a window into evolution and physiology
-
Nelson K.E., Paulsen I.T., and Fraser C.M. Microbial genome sequencing: a window into evolution and physiology. ASM News 67 (2001) 310-317
-
(2001)
ASM News
, vol.67
, pp. 310-317
-
-
Nelson, K.E.1
Paulsen, I.T.2
Fraser, C.M.3
-
3
-
-
27844584769
-
UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1
-
McCready S., et al. UV irradiation induces homologous recombination genes in the model archaeon, Halobacterium sp. NRC-1. Saline Systems 1 (2005) 3
-
(2005)
Saline Systems
, vol.1
, pp. 3
-
-
McCready, S.1
-
5
-
-
35548976144
-
Extremely radiation-resistant mutants of a halophilic archaeon with increased single-stranded DNA-binding protein (RPA) gene expression
-
DeVeaux L.C., et al. Extremely radiation-resistant mutants of a halophilic archaeon with increased single-stranded DNA-binding protein (RPA) gene expression. Radiat. Res. 168 (2007) 507-514
-
(2007)
Radiat. Res.
, vol.168
, pp. 507-514
-
-
DeVeaux, L.C.1
-
6
-
-
12944270421
-
Genome sequence of Halobacterium species NRC-1
-
Ng W.V., et al. Genome sequence of Halobacterium species NRC-1. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 12176-12181
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 12176-12181
-
-
Ng, W.V.1
-
7
-
-
0033962956
-
Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker
-
Peck R.F., DasSarma S., and Krebs M.P. Homologous gene knockout in the archaeon Halobacterium salinarum with ura3 as a counterselectable marker. Mol. Microbiol. 35 (2000) 667-676
-
(2000)
Mol. Microbiol.
, vol.35
, pp. 667-676
-
-
Peck, R.F.1
DasSarma, S.2
Krebs, M.P.3
-
8
-
-
33847035880
-
Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1
-
DasSarma S., Berquist B.R., Coker J.A., DasSarma P., and Müller J.A. Post-genomics of the model haloarchaeon Halobacterium sp. NRC-1. Saline Systems 2 (2006) 3
-
(2006)
Saline Systems
, vol.2
, pp. 3
-
-
DasSarma, S.1
Berquist, B.R.2
Coker, J.A.3
DasSarma, P.4
Müller, J.A.5
-
9
-
-
44449161611
-
-
The HaloWeb database, http://halo2.umbi.umd.edu/cgi-bin/scripts/form2.pl and http://halo3.umbi.umd.edu/cgi-bin/scripts/form2.pl.
-
The HaloWeb database, http://halo2.umbi.umd.edu/cgi-bin/scripts/form2.pl and http://halo3.umbi.umd.edu/cgi-bin/scripts/form2.pl.
-
-
-
-
10
-
-
34247333718
-
Extreme microbes
-
DasSarma S. Extreme microbes. American Scientist 95 (2007) 224-231
-
(2007)
American Scientist
, vol.95
, pp. 224-231
-
-
DasSarma, S.1
-
11
-
-
17444373082
-
Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?
-
Ng W.V., et al. Snapshot of a large dynamic replicon in a halophilic archaeon: megaplasmid or minichromosome?. Genome Res 8 (1998) 1131-1141
-
(1998)
Genome Res
, vol.8
, pp. 1131-1141
-
-
Ng, W.V.1
-
12
-
-
0034767491
-
Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence
-
Kennedy S.P., Ng W.V., Salzberg S.L., Hood L., and DasSarma S. Understanding the adaptation of Halobacterium species NRC-1 to its extreme environment through computational analysis of its genome sequence. Genome Res. 11 (2001) 1641-1650
-
(2001)
Genome Res.
, vol.11
, pp. 1641-1650
-
-
Kennedy, S.P.1
Ng, W.V.2
Salzberg, S.L.3
Hood, L.4
DasSarma, S.5
-
13
-
-
44449130156
-
-
The HaloLex database, www.halolex.mpg.de/public/.
-
The HaloLex database, www.halolex.mpg.de/public/.
-
-
-
-
14
-
-
0020036685
-
Unusual physical organization of the Halobacterium genome
-
Sapienza C., and Doolittle W.F. Unusual physical organization of the Halobacterium genome. Nature 295 (1982) 384-389
-
(1982)
Nature
, vol.295
, pp. 384-389
-
-
Sapienza, C.1
Doolittle, W.F.2
-
15
-
-
0019973910
-
High-frequency genomic rearrangements involving archaebacterial repeat sequence elements
-
Sapienza C., Rose M.R., and Doolittle W.F. High-frequency genomic rearrangements involving archaebacterial repeat sequence elements. Nature 299 (1982) 182-185
-
(1982)
Nature
, vol.299
, pp. 182-185
-
-
Sapienza, C.1
Rose, M.R.2
Doolittle, W.F.3
-
17
-
-
39049103389
-
Genetic systems for halophilic archaea
-
Oren A., and Rainey F. (Eds), Elsevier/Academic Press
-
Berquist B.R., Müller J.A., and DasSarma S. Genetic systems for halophilic archaea. In: Oren A., and Rainey F. (Eds). Extremophiles (2006), Elsevier/Academic Press 649-680
-
(2006)
Extremophiles
, pp. 649-680
-
-
Berquist, B.R.1
Müller, J.A.2
DasSarma, S.3
-
18
-
-
40449120475
-
Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1
-
Pfeiffer F., Schuster S.C., Broichera A., Falb M., Palm P., Rodewalda K., Ruepp A., Soppa J., Tittor J., and Oesterhelt D. Evolution in the laboratory: The genome of Halobacterium salinarum strain R1 compared to that of strain NRC-1. Genomics 91 (2008) 335-346
-
(2008)
Genomics
, vol.91
, pp. 335-346
-
-
Pfeiffer, F.1
Schuster, S.C.2
Broichera, A.3
Falb, M.4
Palm, P.5
Rodewalda, K.6
Ruepp, A.7
Soppa, J.8
Tittor, J.9
Oesterhelt, D.10
-
20
-
-
0343030848
-
High-frequency mutations in a plasmid-encoded gas vesicle gene in Halobacterium halobium
-
DasSarma S., et al. High-frequency mutations in a plasmid-encoded gas vesicle gene in Halobacterium halobium. Proc. Natl. Acad. Sci. U. S. A. 85 (1988) 6861-6865
-
(1988)
Proc. Natl. Acad. Sci. U. S. A.
, vol.85
, pp. 6861-6865
-
-
DasSarma, S.1
-
21
-
-
0024602104
-
Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations
-
DasSarma S. Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations. Can. J. Microbiol. 35 (1989) 65-72
-
(1989)
Can. J. Microbiol.
, vol.35
, pp. 65-72
-
-
DasSarma, S.1
-
22
-
-
0024967328
-
Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobium
-
Jones J.G., et al. Analysis of insertion mutants reveals two new genes in the pNRC100 gas vesicle gene cluster of Halobacterium halobium. Nucleic Acids Res. 17 (1989) 7785-7793
-
(1989)
Nucleic Acids Res.
, vol.17
, pp. 7785-7793
-
-
Jones, J.G.1
-
23
-
-
0025776339
-
Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100
-
Jones J.G., Young D.C., and DasSarma S. Structure and organization of the gas vesicle gene cluster on the Halobacterium halobium plasmid pNRC100. Gene 102 (1991) 117-122
-
(1991)
Gene
, vol.102
, pp. 117-122
-
-
Jones, J.G.1
Young, D.C.2
DasSarma, S.3
-
24
-
-
44449122493
-
Physical and genetic mapping of the unstable gas vesicle plasmid in Halobacterium halobium NRC-1
-
Rodriguez-Valera F. (Ed), Plenum Press
-
Ng W.-L., and DasSarma S. Physical and genetic mapping of the unstable gas vesicle plasmid in Halobacterium halobium NRC-1. In: Rodriguez-Valera F. (Ed). Genetic and applied aspects of halophilic microorganisms (1991), Plenum Press 305-311
-
(1991)
Genetic and applied aspects of halophilic microorganisms
, pp. 305-311
-
-
Ng, W.-L.1
DasSarma, S.2
-
25
-
-
0026178203
-
Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences
-
Ng W.-L., Kothakota S., and DasSarma S. Structure of the gas vesicle plasmid in Halobacterium halobium inversion isomers, inverted repeats, and insertion sequences. J. Bacteriol. 173 (1991) 3933
-
(1991)
J. Bacteriol.
, vol.173
, pp. 3933
-
-
Ng, W.-L.1
Kothakota, S.2
DasSarma, S.3
-
26
-
-
0026646334
-
Genetic transformation of a halophilic archaebacterium with a gas vesicle gene cluster restores its ability to float
-
Halladay J.T., Ng W.-L., and DasSarma S. Genetic transformation of a halophilic archaebacterium with a gas vesicle gene cluster restores its ability to float. Gene 119 (1992) 131-136
-
(1992)
Gene
, vol.119
, pp. 131-136
-
-
Halladay, J.T.1
Ng, W.-L.2
DasSarma, S.3
-
27
-
-
0027316841
-
Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium
-
DasSarma S. Identification and analysis of the gas vesicle gene cluster on an unstable plasmid of Halobacterium halobium. Experientia 49 (1993) 482-486
-
(1993)
Experientia
, vol.49
, pp. 482-486
-
-
DasSarma, S.1
-
28
-
-
0027408494
-
The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC
-
Halladay J.T., Jones J.G., Lin F., MacDonald A.B., and DasSarma S. The rightward gas vesicle operon in Halobacterium plasmid pNRC100: identification of the gvpA and gvpC gene products by use of antibody probes and genetic analysis of the region downstream of gvpC. J. Bacteriol. 175 (1993) 684-692
-
(1993)
J. Bacteriol.
, vol.175
, pp. 684-692
-
-
Halladay, J.T.1
Jones, J.G.2
Lin, F.3
MacDonald, A.B.4
DasSarma, S.5
-
29
-
-
0027323849
-
Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100
-
Ng W.-L., and DasSarma S. Minimal replication origin of the 200-kilobase Halobacterium plasmid pNRC100. J. Bacteriol. 175 (1993) 4584-4596
-
(1993)
J. Bacteriol.
, vol.175
, pp. 4584-4596
-
-
Ng, W.-L.1
DasSarma, S.2
-
31
-
-
0028205760
-
Large deletions in class III gas vesicle-deficient mutants of Halobacterium halobium
-
Ng W.-L., Arora P., and DasSarma S. Large deletions in class III gas vesicle-deficient mutants of Halobacterium halobium. Syst. Appl. Microbiol. 16 (1994) 560-568
-
(1994)
Syst. Appl. Microbiol.
, vol.16
, pp. 560-568
-
-
Ng, W.-L.1
Arora, P.2
DasSarma, S.3
-
32
-
-
0006093482
-
Natural plasmids and plasmid vectors of halophiles
-
Dassarma S., and Fleischmann E.M. (Eds), Cold Spring Harbor Laboratory Press
-
DasSarma S. Natural plasmids and plasmid vectors of halophiles. In: Dassarma S., and Fleischmann E.M. (Eds). Halophiles (1995), Cold Spring Harbor Laboratory Press 243-250
-
(1995)
Halophiles
, pp. 243-250
-
-
DasSarma, S.1
-
33
-
-
0030814406
-
Genetic analysis of the gas vesicle gene cluster in haloarchaea
-
DasSarma S., and Arora P. Genetic analysis of the gas vesicle gene cluster in haloarchaea. FEMS Microbiol. Lett. 153 (1997) 1-10
-
(1997)
FEMS Microbiol. Lett.
, vol.153
, pp. 1-10
-
-
DasSarma, S.1
Arora, P.2
-
34
-
-
33748591589
-
Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing
-
Pinard R., et al. Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. BMC Genomics 7 (2006) 216
-
(2006)
BMC Genomics
, vol.7
, pp. 216
-
-
Pinard, R.1
-
35
-
-
42449141083
-
Use of the DiversiLab repetitive sequence-based PCR system for genotyping and identification of Archaea
-
Cleland D., Krader P., and Emerson D. Use of the DiversiLab repetitive sequence-based PCR system for genotyping and identification of Archaea. J. Microbiol. Methods 73 (2008) 172-178
-
(2008)
J. Microbiol. Methods
, vol.73
, pp. 172-178
-
-
Cleland, D.1
Krader, P.2
Emerson, D.3
-
36
-
-
44449166042
-
On the origin of prokaryotic "species": the taxonomy of halophilic Archaea
-
DasSarma P., and DasSarma S. On the origin of prokaryotic "species": the taxonomy of halophilic Archaea. Saline Systems 4 (2008) 5
-
(2008)
Saline Systems
, vol.4
, pp. 5
-
-
DasSarma, P.1
DasSarma, S.2
-
37
-
-
8744235102
-
Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea
-
Baliga N.S., et al. Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea. Genome Res. 14 (2004) 2221-2234
-
(2004)
Genome Res.
, vol.14
, pp. 2221-2234
-
-
Baliga, N.S.1
-
38
-
-
2442659081
-
Low-pass sequencing for microbial comparative genomics
-
Goo Y.A., et al. Low-pass sequencing for microbial comparative genomics. BMC Genomics 5 (2004) 3
-
(2004)
BMC Genomics
, vol.5
, pp. 3
-
-
Goo, Y.A.1
-
39
-
-
0028019054
-
Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium
-
Hackett N.R., Bobovnikova Y., and Heyrovska N. Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium. J. Bacteriol. 176 (1994) 7711-7718
-
(1994)
J. Bacteriol.
, vol.176
, pp. 7711-7718
-
-
Hackett, N.R.1
Bobovnikova, Y.2
Heyrovska, N.3
-
40
-
-
0028283074
-
Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB
-
St Jean A., Trieselmann B.A., and Charlebois R.L. Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB. Nucleic Acids Res. 22 (1994) 1476-1483
-
(1994)
Nucleic Acids Res.
, vol.22
, pp. 1476-1483
-
-
St Jean, A.1
Trieselmann, B.A.2
Charlebois, R.L.3
-
41
-
-
0029967351
-
Comparative genomic analysis of the Haloferax volcanii DS2 and Halobacterium salinarium GRB contig maps reveals extensive rearrangement
-
St Jean A., and Charlebois R.L. Comparative genomic analysis of the Haloferax volcanii DS2 and Halobacterium salinarium GRB contig maps reveals extensive rearrangement. J. Bacteriol. 178 (1996) 3860-3868
-
(1996)
J. Bacteriol.
, vol.178
, pp. 3860-3868
-
-
St Jean, A.1
Charlebois, R.L.2
-
42
-
-
0031978181
-
Base-calling of automated sequencer traces using phred. II. Error probabilities
-
Ewing B., and Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res. 8 (1998) 186-194
-
(1998)
Genome Res.
, vol.8
, pp. 186-194
-
-
Ewing, B.1
Green, P.2
-
43
-
-
0031955518
-
Base-calling of automated sequencer traces using phred. I. Accuracy assessment
-
Ewing B., Hillier L., Wendl M.C., and Green P. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res. 8 (1998) 175-185
-
(1998)
Genome Res.
, vol.8
, pp. 175-185
-
-
Ewing, B.1
Hillier, L.2
Wendl, M.C.3
Green, P.4
-
44
-
-
0032762209
-
Evolution of organellar genomes
-
Gray M.W. Evolution of organellar genomes. Curr. Opin. Genet. Dev. 9 (1999) 678-687
-
(1999)
Curr. Opin. Genet. Dev.
, vol.9
, pp. 678-687
-
-
Gray, M.W.1
-
45
-
-
44449159022
-
-
Department of Microbiology, University of Massachusetts, Amherst
-
Kennedy S. Understanding genome structure, function, and evolution in the halophilic archaeon Halobacterium NRC-1 (2003), Department of Microbiology, University of Massachusetts, Amherst 171
-
(2003)
Understanding genome structure, function, and evolution in the halophilic archaeon Halobacterium NRC-1
, pp. 171
-
-
Kennedy, S.1
-
46
-
-
3543111963
-
Development of joint application strategies for two microbial gene finders
-
McHardy A.C., Goesmann A., Puhler A., and Meyer F. Development of joint application strategies for two microbial gene finders. Bioinformatics 20 (2004) 1622-1631
-
(2004)
Bioinformatics
, vol.20
, pp. 1622-1631
-
-
McHardy, A.C.1
Goesmann, A.2
Puhler, A.3
Meyer, F.4
-
47
-
-
28944435815
-
Large-scale prokaryotic gene prediction and comparison to genome annotation
-
Nielsen P., and Krogh A. Large-scale prokaryotic gene prediction and comparison to genome annotation. Bioinformatics 21 (2005) 4322-4329
-
(2005)
Bioinformatics
, vol.21
, pp. 4322-4329
-
-
Nielsen, P.1
Krogh, A.2
-
48
-
-
34147174475
-
MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes
-
Zhu H., Hu G.Q., Yang Y.F., Wang J., and She Z.S. MED: a new non-supervised gene prediction algorithm for bacterial and archaeal genomes. BMC Bioinformatics 8 (2007) 97
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 97
-
-
Zhu, H.1
Hu, G.Q.2
Yang, Y.F.3
Wang, J.4
She, Z.S.5
-
49
-
-
2442679707
-
Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1.
-
Goo Y.A., et al. Proteomic analysis of an extreme halophilic archaeon, Halobacterium sp. NRC-1. Mol. Cell Proteomics 2 (2003) 506-524
-
(2003)
Mol. Cell Proteomics
, vol.2
, pp. 506-524
-
-
Goo, Y.A.1
-
50
-
-
3042615963
-
Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1
-
Baliga N.S., et al. Systems level insights into the stress response to UV radiation in the halophilic archaeon Halobacterium NRC-1. Genome Res. 14 (2004) 1025-1035
-
(2004)
Genome Res.
, vol.14
, pp. 1025-1035
-
-
Baliga, N.S.1
-
51
-
-
14244250412
-
Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors
-
Müller J.A., and DasSarma S. Genomic analysis of anaerobic respiration in the archaeon Halobacterium sp. strain NRC-1: dimethyl sulfoxide and trimethylamine N-oxide as terminal electron acceptors. J. Bacteriol. 187 (2005) 1659-1667
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1659-1667
-
-
Müller, J.A.1
DasSarma, S.2
-
52
-
-
33745589744
-
Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter
-
Gan R.R., et al. Proteome analysis of Halobacterium sp. NRC-1 facilitated by the biomodule analysis tool BMSorter. Mol. Cell. Proteomics 5 (2006) 987-997
-
(2006)
Mol. Cell. Proteomics
, vol.5
, pp. 987-997
-
-
Gan, R.R.1
-
53
-
-
37349099750
-
A predictive model for transcriptional control of physiology in a free living cell
-
Bonneau R., et al. A predictive model for transcriptional control of physiology in a free living cell. Cell 131 (2007) 1354-1365
-
(2007)
Cell
, vol.131
, pp. 1354-1365
-
-
Bonneau, R.1
-
54
-
-
36048979618
-
Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature
-
Coker J.A., DasSarma P., Kumar J., Müller J.A., and DasSarma S. Transcriptional profiling of the model Archaeon Halobacterium sp. NRC-1: responses to changes in salinity and temperature. Saline Systems 3 (2007) 6
-
(2007)
Saline Systems
, vol.3
, pp. 6
-
-
Coker, J.A.1
DasSarma, P.2
Kumar, J.3
Müller, J.A.4
DasSarma, S.5
-
55
-
-
37049013315
-
Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA
-
Coker J.A., and DasSarma S. Genetic and transcriptomic analysis of transcription factor genes in the model halophilic Archaeon: coordinate action of TbpD and TfbA. BMC Genet. 8 (2007) 61
-
(2007)
BMC Genet.
, vol.8
, pp. 61
-
-
Coker, J.A.1
DasSarma, S.2
-
56
-
-
34948909792
-
The anatomy of microbial cell state transitions in response to oxygen
-
Schmid A.K., et al. The anatomy of microbial cell state transitions in response to oxygen. Genome Res. 17 (2007) 1399-1413
-
(2007)
Genome Res.
, vol.17
, pp. 1399-1413
-
-
Schmid, A.K.1
-
57
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino sequences in protein database
-
Eng J.K., McCormack A.L., and Yates J.R. An approach to correlate tandem mass spectral data of peptides with amino sequences in protein database. J. Am. Soc. Mass Spectrom. 5 (1994) 976-989
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates, J.R.3
-
58
-
-
0042121237
-
Multiple sequence alignment with the Clustal series of programs
-
Chenna R., et al. Multiple sequence alignment with the Clustal series of programs. Nucleic Acids Res 31 (2003) 3497-3500
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 3497-3500
-
-
Chenna, R.1
|