메뉴 건너뛰기




Volumn 178, Issue 13, 1996, Pages 3860-3868

Comparative genomic analysis of the Haloferax volcanii DS2 and Halobacterium salinarium GRB contig maps reveals extensive rearrangement

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

EID: 0029967351     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.178.13.3860-3868.1996     Document Type: Article
Times cited : (7)

References (48)
  • 1
    • 0028296231 scopus 로고
    • Alignment of genes and SwaI restriction sites to the BamHI genomic map of Haloferax mediterrainei
    • Antón, J., P. López-García, J. P. Abad, C. L. Smith, and R. Amils. 1994. Alignment of genes and SwaI restriction sites to the BamHI genomic map of Haloferax mediterrainei. FEMS Microbiol. Lett. 117:53-60.
    • (1994) FEMS Microbiol. Lett. , vol.117 , pp. 53-60
    • Antón, J.1    López-García, P.2    Abad, J.P.3    Smith, C.L.4    Amils, R.5
  • 3
    • 0026773588 scopus 로고
    • Genomic diversity and organization of virulence genes in the pathogenic anaerobe Clostridium perfringens
    • Canard, B., B. Saint-Joanis, and S. T. Cole. 1992. Genomic diversity and organization of virulence genes in the pathogenic anaerobe Clostridium perfringens. Mol. Microbiol. 6:1421-1429.
    • (1992) Mol. Microbiol. , vol.6 , pp. 1421-1429
    • Canard, B.1    Saint-Joanis, B.2    Cole, S.T.3
  • 4
    • 0026652577 scopus 로고
    • Physical maps of the genomes of three Bacillus cereus strains
    • Carlson, C. R., A. Grønstad, and A.-B. Kolstø. 1992. Physical maps of the genomes of three Bacillus cereus strains. J. Bacteriol. 174:3750-3756.
    • (1992) J. Bacteriol. , vol.174 , pp. 3750-3756
    • Carlson, C.R.1    Grønstad, A.2    Kolstø, A.-B.3
  • 5
    • 0027408392 scopus 로고
    • A complete physical map of a Bacillus thuringiensis chromosome
    • Carlson, C. R., and A.-B. Kolstø. 1993. A complete physical map of a Bacillus thuringiensis chromosome. J. Bacteriol. 175:1053-1060.
    • (1993) J. Bacteriol. , vol.175 , pp. 1053-1060
    • Carlson, C.R.1    Kolstø, A.-B.2
  • 6
    • 0029012858 scopus 로고
    • Linear chromosomes of Lyme disease agent spirochetes: Genetic diversity und conservation of gene order
    • Casjens, S., M. Delange, H. L. Ley III, P. Rosa, and W. M. Huang. 1995. Linear chromosomes of Lyme disease agent spirochetes: genetic diversity und conservation of gene order. J. Bacteriol. 177:2769-2780.
    • (1995) J. Bacteriol. , vol.177 , pp. 2769-2780
    • Casjens, S.1    Delange, M.2    Ley III, H.L.3    Rosa, P.4    Huang, W.M.5
  • 7
    • 0001130271 scopus 로고
    • Transposable elements and genome structure in halobacteria
    • M. Howe and D. Berg (ed.), American Society for Microbiology, Washington, D.C
    • Charlebois, R. L., and W. F. Doolittle. 1989. Transposable elements and genome structure in halobacteria, p. 297-307. In M. Howe and D. Berg (ed.), Mobile DNA. American Society for Microbiology, Washington, D.C.
    • (1989) Mobile DNA , pp. 297-307
    • Charlebois, R.L.1    Doolittle, W.F.2
  • 8
    • 0026351181 scopus 로고
    • Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2
    • Charlebois, R. L., L. C. Schalkwyk, J. D. Hofman, and W. F. Doolittle. 1991. Detailed physical map and set of overlapping clones covering the genome of the archaebacterium Haloferax volcanii DS2. J. Mol. Biol. 222:509-524.
    • (1991) J. Mol. Biol. , vol.222 , pp. 509-524
    • Charlebois, R.L.1    Schalkwyk, L.C.2    Hofman, J.D.3    Doolittle, W.F.4
  • 9
    • 0029042617 scopus 로고
    • Supercoiling and map stability in the bacterial chromosome
    • Charlebois, R. L., and A. St. Jean. 1995. Supercoiling and map stability in the bacterial chromosome. J. Mol. Evol. 41:15-23.
    • (1995) J. Mol. Evol. , vol.41 , pp. 15-23
    • Charlebois, R.L.1    St Jean, A.2
  • 12
    • 0024602104 scopus 로고
    • Mechanisms of genetic variability in Halobacterium halobium: The purple membrane and gas vesicle mutations
    • DasSarma, S. 1989. Mechanisms of genetic variability in Halobacterium halobium: the purple membrane and gas vesicle mutations. Can. J. Microbiol. 35:65-72.
    • (1989) Can. J. Microbiol. , vol.35 , pp. 65-72
    • DasSarma, S.1
  • 13
    • 0027501132 scopus 로고
    • Genetic variability in halophilic archaebacteria
    • Derkacheva, N. I., V. K. Kagramanova, and A. S. Man'kin. 1993. Genetic variability in halophilic archaebacteria (a review). Mol. Biol. 27:287-295.
    • (1993) Mol. Biol. , vol.27 , pp. 287-295
    • Derkacheva, N.I.1    Kagramanova, V.K.2    MaN'Kin, A.S.3
  • 15
    • 0029063730 scopus 로고
    • Physical mapping of bacterial genomes
    • Fonstein, M., and R. Haselkorn. 1995. Physical mapping of bacterial genomes. J. Bacteriol. 177:3361-3369.
    • (1995) J. Bacteriol. , vol.177 , pp. 3361-3369
    • Fonstein, M.1    Haselkorn, R.2
  • 16
    • 0029071569 scopus 로고
    • High-resolution alignment of a 1-megabase-long genome region of three strains of Rhodobacter capsulatus
    • Fonstein, M., T. Nikolskaya, and R. Haselkorn. 1995. High-resolution alignment of a 1-megabase-long genome region of three strains of Rhodobacter capsulatus. J. Bacteriol. 177:2368-2372.
    • (1995) J. Bacteriol. , vol.177 , pp. 2368-2372
    • Fonstein, M.1    Nikolskaya, T.2    Haselkorn, R.3
  • 17
    • 0024288620 scopus 로고
    • Halobacterial flagellins are encoded by a multigene family
    • Gerl, L., and M. Sumper. 1988. Halobacterial flagellins are encoded by a multigene family. J. Biol. Chem. 263:13246-13251.
    • (1988) J. Biol. Chem. , vol.263 , pp. 13246-13251
    • Gerl, L.1    Sumper, M.2
  • 18
    • 0026046978 scopus 로고
    • New approaches in genome analysis by pulsed-field gel electrophoresis: Application to the analysis of Pseudomonas species
    • Grothues, D., and B. Tümmler. 1991. New approaches in genome analysis by pulsed-field gel electrophoresis: application to the analysis of Pseudomonas species. Mol. Microbiol. 5:2763-2776.
    • (1991) Mol. Microbiol. , vol.5 , pp. 2763-2776
    • Grothues, D.1    Tümmler, B.2
  • 19
    • 0028019054 scopus 로고
    • Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium
    • Hackett, N. R., Y. Bobovnikova, and N. Heyrovska. 1994. Conservation of chromosomal arrangement among three strains of the genetically unstable archaeon Halobacterium salinarium. J. Bacteriol. 176:7711-7718.
    • (1994) J. Bacteriol. , vol.176 , pp. 7711-7718
    • Hackett, N.R.1    Bobovnikova, Y.2    Heyrovska, N.3
  • 20
    • 0023046983 scopus 로고
    • ISH51: A large, degenerate family of insertion sequence-like elements in the genome of the archaebacterium, Halobacterium volcanii
    • Hofman, J. D., L. C. Schalkwyk, and W. F. Doolittle. 1986. ISH51: a large, degenerate family of insertion sequence-like elements in the genome of the archaebacterium, Halobacterium volcanii. Nucleic Acids Res. 14:6983-7000.
    • (1986) Nucleic Acids Res. , vol.14 , pp. 6983-7000
    • Hofman, J.D.1    Schalkwyk, L.C.2    Doolittle, W.F.3
  • 21
    • 0024059887 scopus 로고
    • Two genes encoding gas vacuole proteins in Halobacterium halobium
    • Horne, M., C. Englert, and F. Pfeifer. 1988. Two genes encoding gas vacuole proteins in Halobacterium halobium. Mol. Gen. Genet. 213:459-464.
    • (1988) Mol. Gen. Genet. , vol.213 , pp. 459-464
    • Horne, M.1    Englert, C.2    Pfeifer, F.3
  • 22
    • 0027944301 scopus 로고
    • Pulsed-field electrophoresis-finger-printing, genome size estimation and rrn loci number of Rhizobium galegae
    • Huber, I., and S. Selenska-Pobell. 1994. Pulsed-field electrophoresis-finger-printing, genome size estimation and rrn loci number of Rhizobium galegae. J. Appl. Bacteriol. 77:528-533.
    • (1994) J. Appl. Bacteriol. , vol.77 , pp. 528-533
    • Huber, I.1    Selenska-Pobell, S.2
  • 23
    • 0027446991 scopus 로고
    • Characterization of paralogous and orthologous members of the superoxide dismutase gene family from genera of the halophilic archaebacteria
    • Joshi, P., and P. P. Dennis. 1993. Characterization of paralogous and orthologous members of the superoxide dismutase gene family from genera of the halophilic archaebacteria. J. Bacteriol. 175:1561-1571.
    • (1993) J. Bacteriol. , vol.175 , pp. 1561-1571
    • Joshi, P.1    Dennis, P.P.2
  • 24
    • 0029185212 scopus 로고
    • Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement
    • Kececioglu, J., and D. Sankoff. 1995. Exact and approximation algorithms for sorting by reversals, with application to genome rearrangement. Algorithmica 13:180-210.
    • (1995) Algorithmica , vol.13 , pp. 180-210
    • Kececioglu, J.1    Sankoff, D.2
  • 25
    • 0025245767 scopus 로고
    • Organization of the bacterial chromosome
    • Krawiec, S., and M. Riley. 1990. Organization of the bacterial chromosome. Microbiol. Rev. 54:502-539.
    • (1990) Microbiol. Rev. , vol.54 , pp. 502-539
    • Krawiec, S.1    Riley, M.2
  • 26
    • 0026518931 scopus 로고
    • Physical and genetic mapping of the genomes of five Mycoplasma hominis strains by pulsed-field gel electrophoresis
    • Ladefoged, S. A., and G. Christiansen. 1992. Physical and genetic mapping of the genomes of five Mycoplasma hominis strains by pulsed-field gel electrophoresis. J. Bacteriol. 174:2144-2207.
    • (1992) J. Bacteriol. , vol.174 , pp. 2144-2207
    • Ladefoged, S.A.1    Christiansen, G.2
  • 27
    • 0027151797 scopus 로고
    • Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2)
    • Leblond, P., M. Redenbach, and J. Cullum. 1993. Physical map of the Streptomyces lividans 66 genome and comparison with that of the related strain Streptomyces coelicolor A3(2). J. Bacteriol. 175:3422-3429.
    • (1993) J. Bacteriol. , vol.175 , pp. 3422-3429
    • Leblond, P.1    Redenbach, M.2    Cullum, J.3
  • 28
    • 0029076391 scopus 로고
    • Physical and genetic map of the Lactococcus lactis subsp. cremoris MG1363 chromosome: Comparison with that of Lactococcus lactis subsp. lactis IL 1403 reveals a large genome inversion
    • Le Bourgeois, P., M. Lautier, L. van den Berghe, M. J. Gasson, and P. Ritzenthaler. 1995. Physical and genetic map of the Lactococcus lactis subsp. cremoris MG1363 chromosome: comparison with that of Lactococcus lactis subsp. lactis IL 1403 reveals a large genome inversion. J. Bacteriol. 177:2840-2850.
    • (1995) J. Bacteriol. , vol.177 , pp. 2840-2850
    • Le Bourgeois, P.1    Lautier, M.2    Van Den Berghe, L.3    Gasson, M.J.4    Ritzenthaler, P.5
  • 29
    • 0028876825 scopus 로고
    • Rearrangements in the genome of the bacterium Salmonella typhi
    • Liu, S.-L., and K. E. Sanderson. 1995. Rearrangements in the genome of the bacterium Salmonella typhi. Proc. Natl. Acad. Sci. USA 92:1018-1022.
    • (1995) Proc. Natl. Acad. Sci. USA , vol.92 , pp. 1018-1022
    • Liu, S.-L.1    Sanderson, K.E.2
  • 30
    • 0026556412 scopus 로고
    • Genomic organization of the halophilic archaeon Haloferax mediterranei: Physical map of the chromosome
    • López-García, P., J. P. Abad, C. Smith, and R. Amils. 1992. Genomic organization of the halophilic archaeon Haloferax mediterranei: physical map of the chromosome. Nucleic Acids Res. 20:2459-2464.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 2459-2464
    • López-García, P.1    Abad, J.P.2    Smith, C.3    Amils, R.4
  • 31
    • 0028987147 scopus 로고
    • Genomic stability in the archaea Haloferax volcanii and Haloferax mediterranei
    • López-García, P., A. St. Jean, R. Amils, and R. L. Charlebois. 1995. Genomic stability in the archaea Haloferax volcanii and Haloferax mediterranei. J. Bacteriol. 177:1405-1408.
    • (1995) J. Bacteriol. , vol.177 , pp. 1405-1408
    • López-García, P.1    St Jean, A.2    Amils, R.3    Charlebois, R.L.4
  • 34
    • 0029166294 scopus 로고
    • Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning
    • Mojica, F. J. M., C. Ferrer, G. Juez, and F. Rodríguez-Valera. 1995. Long stretches of short tandem repeats are present in the largest replicons of the Archaea Haloferax mediterranei and Haloferax volcanii and could be involved in replicon partitioning. Mol. Microbiol. 17:85-93.
    • (1995) Mol. Microbiol. , vol.17 , pp. 85-93
    • Mojica, F.J.M.1    Ferrer, C.2    Juez, G.3    Rodríguez-Valera, F.4
  • 35
    • 0023514080 scopus 로고
    • Evolution in bacteria: Evidence for a universal substitution rate in cellular genomes
    • Ochman, H., and A. Wilson. 1987. Evolution in bacteria: evidence for a universal substitution rate in cellular genomes. J. Mol. Evol. 26:74-86.
    • (1987) J. Mol. Evol. , vol.26 , pp. 74-86
    • Ochman, H.1    Wilson, A.2
  • 36
    • 0027970963 scopus 로고
    • Conservation of gene arrangement and an unusual organization of rRNA genes in the linear chromosomes of the Lyme disease spirochaetes Borrelia burgdorferi, B. garinii and B. afzelii
    • Ojaimi, C., B. E. Davidson, I. Saint Girons, and I. G. Old. 1994. Conservation of gene arrangement and an unusual organization of rRNA genes in the linear chromosomes of the Lyme disease spirochaetes Borrelia burgdorferi, B. garinii and B. afzelii. Microbiology 140:2931-2940.
    • (1994) Microbiology , vol.140 , pp. 2931-2940
    • Ojaimi, C.1    Davidson, B.E.2    Saint Girons, I.3    Old, I.G.4
  • 38
    • 0021964892 scopus 로고
    • Genome organization in Halobacterium halobium: A 70 kh island of more (AT) rich DNA in the chromosome
    • Pfeifer, F., and M. Betlach. 1985. Genome organization in Halobacterium halobium: a 70 kh island of more (AT) rich DNA in the chromosome. Mol. Gen. Genet. 198:444-455.
    • (1985) Mol. Gen. Genet. , vol.198 , pp. 444-455
    • Pfeifer, F.1    Betlach, M.2
  • 39
    • 0025602887 scopus 로고
    • Transposition burst of the ISH27 insertion element family in Halobacterium halobium
    • Pfeifer, F., and U. Blaseio. 1990. Transposition burst of the ISH27 insertion element family in Halobacterium halobium. Nucleic Acids Res. 18:6921-6425.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 6921-16425
    • Pfeifer, F.1    Blaseio, U.2
  • 40
    • 0002209561 scopus 로고
    • Genome organization
    • F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechler, and H. E. Umbarger (ed.), American Society for Microbiology, Washington, D.C.
    • Riley, M., and S. Krawlec. 1987. Genome organization, p. 967-981. In F. C. Neidhardt, J. L. Ingraham, K. B. Low, B. Magasanik, M. Schaechler, and H. E. Umbarger (ed.), Escherichia coli and Salmonella typhimurium: cellular and molecular biology. American Society for Microbiology, Washington, D.C.
    • (1987) Escherichia Coli and Salmonella Typhimurium: Cellular and Molecular Biology , pp. 967-981
    • Riley, M.1    Krawlec, S.2
  • 42
    • 0020036685 scopus 로고
    • Unusual physical organization of the Halobacterium genome
    • Sapienza, C., and W. F. Doolittle. 1982. Unusual physical organization of the Halobacterium genome. Nature (London) 295:384-389.
    • (1982) Nature (London) , vol.295 , pp. 384-389
    • Sapienza, C.1    Doolittle, W.F.2
  • 43
    • 0019973910 scopus 로고
    • High-frequency genomic rearrangements involving archaebacterial repeat sequence elements
    • Sapienza, C., M. R. Rose, and W. F. Doolittle. 1982. High-frequency genomic rearrangements involving archaebacterial repeat sequence elements. Nature (London) 299:182-185.
    • (1982) Nature (London) , vol.299 , pp. 182-185
    • Sapienza, C.1    Rose, M.R.2    Doolittle, W.F.3
  • 45
    • 0024588672 scopus 로고
    • Halobacterium sp. GRB: A species to work with!?
    • Soppa, J., and D. Oesterhelt. 1989. Halobacterium sp. GRB: a species to work with!? Can. J. Microbiol. 35:205-209.
    • (1989) Can. J. Microbiol. , vol.35 , pp. 205-209
    • Soppa, J.1    Oesterhelt, D.2
  • 46
    • 0028899180 scopus 로고
    • Physical and genetic map of the Methanobacterium wolfei genome and its comparison with the updated genomic map of Methanobacterium thermoautotrophicum Marburg
    • Slettler, R., G. Erauso, and T. Leisinger. 1995. Physical and genetic map of the Methanobacterium wolfei genome and its comparison with the updated genomic map of Methanobacterium thermoautotrophicum Marburg. Arch. Microbiol. 163:205-210.
    • (1995) Arch. Microbiol. , vol.163 , pp. 205-210
    • Slettler, R.1    Erauso, G.2    Leisinger, T.3
  • 47
    • 0028283074 scopus 로고
    • Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB
    • St. Jean, A., B. A. Trieselmann, and R. L. Charlebois. 1994. Physical map and set of overlapping cosmid clones representing the genome of the archaeon Halobacterium sp. GRB. Nucleic Acids Res. 22:1476-1483.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 1476-1483
    • St Jean, A.1    Trieselmann, B.A.2    Charlebois, R.L.3
  • 48
    • 0027320777 scopus 로고
    • Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity
    • Zuerner, R. L., J. L. Herrmann, and I. Saint Girons. 1993. Comparison of genetic maps for two Leptospira interrogans serovars provides evidence for two chromosomes and intraspecies heterogeneity. J. Bacteriol. 175:5445-5451.
    • (1993) J. Bacteriol. , vol.175 , pp. 5445-5451
    • Zuerner, R.L.1    Herrmann, J.L.2    Saint Girons, I.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.