Complete gene sequence of a human Puumala hantavirus isolate, Puumala Umeå/hu: Sequence comparison and characterisation of encoded gene products

Virus Research

Volumn 105, Issue 2, 2004, Pages 147-155

  Johansson, Patrik ^a,b   Olsson, Marie ^a   Lindgren, Lena ^a   Ahlm, Clas ^b   Elgh, Fredrik ^a,b   Holmström, Anna ^a   Bucht, Göran ^a  

^a SWEDISH DEFENCE RESEARCH AGENCY   (Sweden)

^b UMEÅ UNIVERSITY   (Sweden)

Author keywords

Andes virus; ANDV; BCCV; Dobrava virus; DOBV; haemorrhagic fever with renal syndrome; Hantaan virus; HFRS; HTNV; N protein; nucleocapsid protein; Puumala virus; PUUV; Seoul virus; SEOV; Sin Nombre virus; SNV; Topografov virus; TOPV; Tula virus; TULV

Indexed keywords

GENE PRODUCT; VIRUS ENVELOPE PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CORRELATION ANALYSIS; GENE SEQUENCE; GLYCOSYLATION; MAMMAL CELL; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEIN EXPRESSION; PUUMALA VIRUS; RNA SEQUENCE; VIRUS CHARACTERIZATION; VIRUS INFECTION;

ANIMALS; CERCOPITHECUS AETHIOPS; CLONING, MOLECULAR; COS CELLS; DNA, COMPLEMENTARY; ELECTROPHORETIC MOBILITY SHIFT ASSAY; GENE EXPRESSION; GENES, VIRAL; GENOME, VIRAL; GLYCOSYLATION; HEMORRHAGIC FEVER WITH RENAL SYNDROME; HUMANS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, SITE-DIRECTED; PHYLOGENY; PROTEIN PROCESSING, POST-TRANSLATIONAL; PUUMALA VIRUS; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL ENVELOPE PROTEINS;

ANDES VIRUS; BUNYAVIRIDAE; DOBRAVA VIRUS; HANTAAN VIRUS; HANTAVIRUS; HANTAVIRUS ISOLATES; MAMMALIA; PUUMALA VIRUS; SEOUL VIRUS; SIN NOMBRE VIRUS; TULA VIRUS;

EID: 4444300614     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.virusres.2004.05.005     Document Type: Article

References (31)

1. Bowen M.D., Kariwa H., Rollin P.E., Peters C.J., Nichol S.T. Genetic characterization of a human isolate of Puumala hantavirus from France. Virus Res. 38:2001;279-289. [Erratum in Virus Res. 79, 201]
2. Bucht G., Sjölander K.B., Eriksson S., Lindgren L., Lundkvist Å., Elgh F. Modifying the cellular transport of DNA-based vaccines alters the immune response to hantavirus nucleocapsid protein. Vaccine. 19:2001;3820-3829
3. Chu G., Hayakawa H., Berg P. Electroporation for the efficient transfection of mammalian cells with DNA. Nucleic Acids Res. 15:1987;1311-1326
4. Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) version 3.5c. Distributed by the author. Department of Genetics, University of Washington.
5. Flick R., Elgh F., Pettersson R.F. Mutational analysis of the Uukuniemi virus (Bunyaviridae family) promoter reveals two elements of functional importance. J. Virol. 76:2002;10849-10860
6. Gabius H.J., Andre S., Kaltner H., Siebert H.C. The sugar code: functional lectinomics. Biochim. Biophys. Acta. 1572:2002;165-177
7. Gupta, R., Jung, E., Brunak S., 2002. Prediction of N-glycosylation sites in human proteins. Manuscript in preparation, http://www.cbs.dtu.dk/services/ NetNGlyc/.
8. Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98; 53, 150-156.
9. Hall, T.A., 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98; 53, 150-156.
10. Hansen J.E., Lund O., Engelbrecht J., Bohr H., Nielsen J.O., Hansen J.E. Prediction of O-glycosylation of mammalian proteins: specificity patterns of UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase. Biochem. J. 308:1995;801-813
11. Hansen J.E., Lund O., Rapacki K., Brunak S. O-GLYCBASE version 2.0: a revised database of O-glycosylated proteins. Nucleic Acids Res. 25:1997;278-282
12. Hansen J.E., Lund O., Tolstrup N., Gooley A.A., Williams K.L., Brunak S. NetOglyc: prediction of mucin type O-glycosylation sites based on sequence context and surface accessibility. Glycoconj. J. 15:1998;115-130
13. Hasegawa M., Kishino H., Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. E. 22:1985;160-174
14. Ho S.N., Hunt H.D., Horton R.M., Pullen J.K., Pease L.R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene. 77:1989;51-59
15. Hörling J., Cheng Y., Plyusnin A., Persson K., Lehvaslaiho H., Vaheri A., Niklasson B., Lundkvist Å. Nucleotide and deduced amino acid sequences of the M and S genome segments of a Swedish Puumala virus isolate. Virus Res. 39:1995;321-330
16. Johansson P., Lindgren T., Lundström M., Holmström A., Elgh F., Bucht G. PCR-generated linear DNA fragments utilized as a hantavirus DNA vaccine. Vaccine. 20:2002;3379-3388
17. Juto P., Elgh F., Ahlm C., Alexeyev O.A., Edlund K., Lundkvist A., Wadell G. The first human isolate of Puumala virus in Scandinavia as cultured from phytohemagglutinin stimulated leucocytes. J. Med. Virol. 53:1997;150-156
18. Lundkvist A., Wiger D., Hörling J., Sjölander K.B., Plyusnina A., Mehl R., Vaheri A., Plyusnin A. Isolation and characterization of Puumala hantavirus from Norway: evidence for a distinct phylogenetic sublineage. J. Gen. Virol. 79:1998;2603-2614
19. Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput. Appl. Biosci. 12:1996;357-358
20. Pennica D., Holmes W.E., Kohr W.J., Harkins R.N., Vehar G.A., Ward C.A., Bennett W.F., Yelverton E., Seeburg P.H., Heyneker H.L., Goeddel D.V., Collen D. Cloning and expression of human tissue-type plasminogen activator cDNA in E. coli. Nature. 301:1983;214-221
21. Piiparinen H., Vapalahti O., Plyusnin A., Vaheri A., Lankinen H. Sequence analysis of the Puumala hantavirus Sotkamo strain L segment. Virus Res. 51:1997;1-7
22. Plyusnin A., Vapalahti O., Vaheri A. Hantaviruses: genome structure, expression and evolution. J. Gen. Virol. 77:1996;2677-2687
23. Plyusnin A. Genetics of hantaviruses: implications to taxonomy. Arch. Virol. 147:2002a;665-682
24. Plyusnin A., Kukkonen S.K., Plyusnina A., Vapalahti O., Vaheri A. Transfection-mediated generation of functionally competent Tula hantavirus with recombinant S RNA segment. EMBO J. 21:2002;1497-1503
25. Rodriguez L.L., Owens J.H., Peters C.J., Nichol S.T. Genetic reassortment among viruses causing hantavirus pulmonary syndrome. Virology. 242:1998;99-106
26. Schmaljohn C., Hjelle B. Hantaviruses: a global disease problem. Emerg. Infect. Dis. 3:1997;95-104
27. Stacy J.E., Jorde P.E., Steen H., Ims R.A., Purvis A., Jakobsen K.S. Lack of concordance between mtDNA gene flow and population density fluctuations in the bank vole. Mol. Ecol. 6:1997;751-759
28. Strauss J.H., Strauss E.G. Evolution of RNA viruses. Annu. Rev. Microbiol. 42:1988;657-683
29. Strimmer K., von Haeseler A. Likelihood-mapping: a simple method to visualize phylogenetic content of a sequence alignment. Proc. Natl. Acad. Sci. U.S.A. 94:1997;6815-6819
30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25:1997;4876-4882
31. Varki A. Biological roles of oligosaccharides: all of the theories are correct. Glycobiology. 3:1993;97-130