Sequence analysis of the Puumala hantavirus Sotkamo strain L segment

Virus Research

Volumn 51, Issue 1, 1997, Pages 1-7

  Piiparinen, Heli ^a   Vapalahti, Olli ^a   Plyusnin, Alexander ^a   Vaheri, Antti ^a   Lankinen, Hilkka ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

Author keywords

Genetic variation; Hantavirus; L protein; RNA polymerase

Indexed keywords

GLYCINE CLEAVAGE SYSTEM; RNA POLYMERASE;

CONTROLLED STUDY; FINLAND; GENETIC VARIABILITY; HANTAVIRUS; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; PUUMALA VIRUS; SEQUENCE ANALYSIS; SHORT SURVEY; VIRUS STRAIN;

HANTAVIRUS; PUUMALA VIRUS;

EID: 0031239301     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(97)00073-7     Document Type: Article

References (31)

1. Antic, D., Lim, B.-U., Kang, C.Y., 1991. Nucleotide sequence and coding capacity of the large (L) genomic RNA segment of Seoul 80-39 virus, a member of the hantavirus genus. Virus Res. 19, 59-66.
2. Brummer-Korvenkontio, M., Henttonen, H., Vaheri, A., 1982. Hemorrhagic fever with renal syndrome in Finland: ecology and virology of Nephropathia epidemica. Scand. J. Infect. Dis. Suppl. 36, 88-91.
3. Chizhikov, V.E., Spiropoulou, C.F., Morzunov, S.P., Monroe, M.C., Peters, C.J., Nichol, S.T., 1995. Complete genetic characterization and analysis of isolation of Sin Nombre virus. J. Virol. 69, 8132-8136.
4. Chomzynski, P., Sacchi, N., 1987. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159.
5. Devereux, J., Haeberli, P., Smithies, O., 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
6. Dunn, E.F., Pritlove, D.C., Jin, H., Elliot, R.M., 1995. Transcription of a recombinant bunyavirus RNA template by transiently expressed bunyavirus proteins. Virology 211, 133-143.
7. Felsenstein, J., 1993. PHYLIP (Phytogeny Inference Package).
8. Garcin, D., Lezzi, M., Dobss, M., Elliot, R.M., Schmaljohn, C., Kang, C.Y., Kolakofsky, D., 1995. The 5′ ends of Hantaan virus (Bunyaviridae) RNAs suggest a prime-and-realign mechanism for the initiation of RNA synthesis. J. Virol. 69, 5747-5762.
9. Hjelle, B., Torrez-Martinez, N., Koster, F.T., 1996. Hantavirus pulmonary syndrome-related virus from Bolivia. Lancet 347, 57.
10. Lopez, N., Müller, R., Prehaud, C., Bouloy, M., 1995. The L protein of Rift Valley fever virus can rescue viral ribonucleoproteins and transcribe synthetic genome-like RNA molecules. J. Virol. 69, 3972-3979.
11. Lopez, N., Padula, P., Rossi, C., Lázaro, M.E., Franze-Fernandez, M.T., 1996. Genetic identification of a new hantavirus causing severe pulmonary syndrome in Argentina. Virology 220, 223-226.
12. Mandl, C.W., Heinz, F.X., Puchhammer-Stöckl, E., Kunz, C., 1991. Sequencing the termini of capped viral RNA by 5′-3′ ligation and PCR. BioTechniques 10, 485-486.
13. Morzunov, S.P., Feldmann, H., Spiropoulou, C.F., Semenova, V.A., Rollin, P.E., Ksiazek, T.G., Peters, C.J., Nichol, S.T., 1995. A newly recognized virus associated with a fatal case of hantavirus pulmonary syndrome in Louisiana. J. Virol. 69, 1980-1983.
14. Müller, R., Poch, O., Delarue, M., Bishop, D.H.L., Bouloy, M., 1994. Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J. Gen. Virol. 75, 1345-1352.
15. Plyusnin, A., Vapalahti, O., Ulfves, K., Lehväslaiho, H., Apekina, N., Gavrilovskaya, I., Blinov, V., Vaheri, A., 1994. Sequences of wild Puumala virus genes show a correlation of genetic variation with geographic origin of the strains. J. Gen. Virol. 75, 405-409.
16. Plyusnin, A., Vapalahti, O., Lundkvist, Å., Henttonen, H., Vaheri, A., 1996a. Newly recognized hantavirus in Siberian lemmings. Lancet 347, 1835-1836.
17. Plyusnin, A., Vapalahti, O., Vaheri, A., 1996b. Hantaviruses: genome structure, expression and evolution. J. Gen. Virol. 77, 2677-2687.
18. Plyusnin, A., Hörling, J., Kanerva, M., Mustonen, J., Cheng, Y., Partanen, J., Vapalahti, O., Kukkonen, S.K.J., Niemimaa, J., Henttonen, H., Niklasson, B., Lundkvist, Å., Vaheri, A., 1997. Puumala hantavirus genome in patients with Nephropathia epidemica: correlation of PCR positivity with HLA haplotype and link to viral sequences in local rodents. J. Clin. Microbiol. 35, 1090-1096.
19. Poch, O., Sauvaget, I., Delarue, M., Tordo, N., 1989. Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J. 8, 3867-3874.
20. Raju, R., Kolakofsky, D., 1989. The ends of La Crosse virus genome and antigenome RNAs within nucleocapsids are base paired. J. Virol. 63, 122-128.
21. Ravkov, E.V., Rollin, P.E., Ksiazek, T.G., Peters, C.J., Nichol, S.T., 1995. Genetic and serologic analysis of Black Greek Canal virus and its association with human disease and Sigmodon hispidus infection. Virology 210, 482-489.
22. Schmaljohn, C.S., Hasty, S.E., Dalrymple, J.M., LeDuc, J.W., Lee, H.W., von Bonsdorff, C.-H., Brummer-Korvenkontio, M., Vaheri, A., Tsai, T.F., Regnery, H.L., Goldgaber, D., Lee, P.W., 1985. Antigenic and genetic properties of viruses linked to hemorrhagic fever with renal syndrome. Science 227, 1041-1044.
23. Schmaljohn, C.S., 1990. Nucleotide sequence of the L genome segment of Hantaan virus. Nucleic Acids Res. 18, 6728.
24. Schmaljohn, C.S., 1996. Molecular biology of hantaviruses. In: Elliot, R. (Ed.), The Bunyaviridae. Plenum, New York, pp. 63-90.
25. Spiropoulou, C.F., Morzunov, S., Feldmann, H., Sanchez, A., Peters, C.P., Nichol, S.T., 1994. Genome structure and variability of a causing hantavirus pulmonary syndrome. Virology 200, 715-723.
26. Stohwasser, R., Giebel, L.B., Zöller, L., Bautz, E.K.F., Darai, G., 1990. Molecular characterization of the RNA S segment of Nephropathia epidemica virus strain Hällnäs B1. Virology 174, 79-86.
27. Stohwasser, R., Raab, K., Darai, G., Bautz, E.K.F., 1991. Primary structure of the large (L) RNA segment of Nephropathia epidemica virus strain Hällnäs B1 coding for the viral RNA polymerase. Virology 183, 386-391.
28. Tiley, L.S., Hagen, M., Matthews, J.T., Krystal, M., 1994. Sequence specific binding of the influenza virus RNA polymerase to sequences located at the 5′ ends of viral RNAs. J. Virol. 68, 5108-5116.
29. Vapalahti, O., Kallio-Kokko, H., Salonen, E.-M., Brummer-Korvenkontio, M., Vaheri, A., 1992. Cloning and sequencing of Puumala virus Sotkamo strain S and M RNA segments: evidence for strain variation in hantaviruses and expression of the nucleocapsid protein. J. Gen. Virol. 73, 829-838.
30. Vapalahti, O., Lundkvist, Å., Kukkonen, S.K.J., Cheng, Y., Gilljam, M., Kanerva, M., Manni, T., Pejcoch, M., Niemimaa, J., Kaikusalo, A., Henttonen, H., Vaheri, A., Plyusnin, A., 1996. Isolation and characterization of Tula virus, a distinct serotype in the genus Hantavirus, family Bunyaviridae. J. Gen. Virol. 77, 3063-3067.
31. Wertz, G.W., Whelan, S., LeGrone, A., Ball, L.A., 1994. Extent of terminal complementarity modulates the balance between transcription and replication of vesicular stomatitis virus RNA. Proc. Natl. Acad. Sci. USA 91, 8587-8591.