메뉴 건너뛰기




Volumn 24, Issue 18, 2004, Pages 8104-8112

Global role of TATA box-binding protein recruitment to promoters in mediating gene expression profiles

Author keywords

[No Author keywords available]

Indexed keywords

TATA BINDING PROTEIN;

EID: 4444257699     PISSN: 02707306     EISSN: None     Source Type: Journal    
DOI: 10.1128/MCB.24.18.8104-8112.2004     Document Type: Article
Times cited : (52)

References (41)
  • 1
    • 1542328960 scopus 로고    scopus 로고
    • Identification and distinct regulation of yeast TATA box-containing genes
    • Basehoar, A. D., S. J. Zanton, and B. F. Pugh. 2004. Identification and distinct regulation of yeast TATA box-containing genes. Cell 116:699-709.
    • (2004) Cell , vol.116 , pp. 699-709
    • Basehoar, A.D.1    Zanton, S.J.2    Pugh, B.F.3
  • 2
    • 0029053016 scopus 로고
    • Degradation of mRNA in eukaryotes
    • Beelman, C. A., and R. Parker. 1995. Degradation of mRNA in eukaryotes. Cell 81:179-183.
    • (1995) Cell , vol.81 , pp. 179-183
    • Beelman, C.A.1    Parker, R.2
  • 3
    • 0027522235 scopus 로고
    • Cooperative DNA binding of p53 with TFIID (TBP): A possible mechanism for transcriptional activation
    • Chen, X., G. Farmer, H. Zhu, R. Prywes, and C. Prives. 1993. Cooperative DNA binding of p53 with TFIID (TBP): a possible mechanism for transcriptional activation. Genes Dev. 7:1837-1849.
    • (1993) Genes Dev. , vol.7 , pp. 1837-1849
    • Chen, X.1    Farmer, G.2    Zhu, H.3    Prywes, R.4    Prives, C.5
  • 5
    • 0026531863 scopus 로고
    • The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1
    • Comai, L., N. Tanese, and R. Tjian. 1992. The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1. Cell 68:965-976.
    • (1992) Cell , vol.68 , pp. 965-976
    • Comai, L.1    Tanese, N.2    Tjian, R.3
  • 6
    • 0026741634 scopus 로고
    • The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells
    • Cormack, B. P., and K. Struhl. 1992. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell 69:685-696.
    • (1992) Cell , vol.69 , pp. 685-696
    • Cormack, B.P.1    Struhl, K.2
  • 8
    • 0036510779 scopus 로고    scopus 로고
    • Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae
    • Dieci, G., S. Giuliodori, M. Catellani, R. Percudani, and S. Ottonello. 2002. Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae. J. Biol. Chem. 277:6903-6914.
    • (2002) J. Biol. Chem. , vol.277 , pp. 6903-6914
    • Dieci, G.1    Giuliodori, S.2    Catellani, M.3    Percudani, R.4    Ottonello, S.5
  • 10
    • 0027332365 scopus 로고
    • Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB
    • Goodrich, J. A., T. Hoey, C. J. Thut, A. Admon, and R. Tjian. 1993. Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Cell 75:519-530.
    • (1993) Cell , vol.75 , pp. 519-530
    • Goodrich, J.A.1    Hoey, T.2    Thut, C.J.3    Admon, A.4    Tjian, R.5
  • 11
    • 0025864265 scopus 로고
    • Roles of TFIID in transcriptional initiation by RNA polymerase II
    • Greenblatt, J. 1991. Roles of TFIID in transcriptional initiation by RNA polymerase II. Cell 66:1067-1070.
    • (1991) Cell , vol.66 , pp. 1067-1070
    • Greenblatt, J.1
  • 13
    • 0035808454 scopus 로고    scopus 로고
    • The transcriptional activator Cat8p provides a major contribution to the reprogramming of carbon metabolism during the diauxic shift in Saccharomyces cerevisiae
    • Haurie, V., M. Perrot, T. Mini, P. Jeno, F. Sagliocco, and H. Boucherie. 2001. The transcriptional activator Cat8p provides a major contribution to the reprogramming of carbon metabolism during the diauxic shift in Saccharomyces cerevisiae. J. Biol. Chem. 276:76-85.
    • (2001) J. Biol. Chem. , vol.276 , pp. 76-85
    • Haurie, V.1    Perrot, M.2    Mini, T.3    Jeno, P.4    Sagliocco, F.5    Boucherie, H.6
  • 14
    • 0032483576 scopus 로고    scopus 로고
    • The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor
    • Huang, M., Z. Zhou, and S. J. Elledge. 1998. The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell 94:595-605.
    • (1998) Cell , vol.94 , pp. 595-605
    • Huang, M.1    Zhou, Z.2    Elledge, S.J.3
  • 15
    • 0028068714 scopus 로고
    • Facilitated binding of TATA-binding protein to nucleosomal DNA
    • Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370:481-485.
    • (1994) Nature , vol.370 , pp. 481-485
    • Imbalzano, A.N.1    Kwon, H.2    Green, M.R.3    Kingston, R.E.4
  • 16
    • 4444296400 scopus 로고    scopus 로고
    • Isolation and amplification of array material from yeast
    • D. Bowtell and J. Sambrook (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Iyer, V. R. 2003. Isolation and amplification of array material from yeast, p. 30-34. In D. Bowtell and J. Sambrook (ed.), DNA microarrays: a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (2003) DNA Microarrays: A Molecular Cloning Manual , pp. 30-34
    • Iyer, V.R.1
  • 17
    • 2942621146 scopus 로고    scopus 로고
    • Microarray-based detection of DNA protein interactions: Chromatin immunoprecipitation on microarrays
    • D. Bowtell and J. Sambrook (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • Iyer, V. R. 2003. Microarray-based detection of DNA protein interactions: chromatin immunoprecipitation on microarrays, p. 453-463. In D. Bowtell and J. Sambrook (ed.), DNA microarrays: a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
    • (2003) DNA Microarrays: A Molecular Cloning Manual , pp. 453-463
    • Iyer, V.R.1
  • 18
    • 0035945567 scopus 로고    scopus 로고
    • Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
    • Iyer, V. R., C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, and P. O. Brown. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-538.
    • (2001) Nature , vol.409 , pp. 533-538
    • Iyer, V.R.1    Horak, C.E.2    Scafe, C.S.3    Botstein, D.4    Snyder, M.5    Brown, P.O.6
  • 19
    • 0032882170 scopus 로고    scopus 로고
    • Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species-specific diversity of codon usage based on multivariate analysis
    • Kanaya, S., Y. Yamada, Y. Kudo, and T. Ikemura. 1999. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238:143-155.
    • (1999) Gene , vol.238 , pp. 143-155
    • Kanaya, S.1    Yamada, Y.2    Kudo, Y.3    Ikemura, T.4
  • 20
    • 0642340504 scopus 로고    scopus 로고
    • The Longhorn Array Database (LAD): An open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
    • 20 August, posting date. [Online.]
    • Killion, P. J., G. Sherlock, and V. R. Iyer. 20 August 2003, posting date. The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD). BMC Bioinformatics 4:32. [Online.] http://www.biomedcentral.com/1471-2105/4/32.
    • (2003) BMC Bioinformatics , vol.4 , pp. 32
    • Killion, P.J.1    Sherlock, G.2    Iyer, V.R.3
  • 21
    • 0033542436 scopus 로고    scopus 로고
    • Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
    • Kuras, L., and K. Struhl. 1999. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 399:609-613.
    • (1999) Nature , vol.399 , pp. 609-613
    • Kuras, L.1    Struhl, K.2
  • 23
    • 0033542484 scopus 로고    scopus 로고
    • Enhancement of TBP binding by activators and general transcription factors
    • Li, X. Y., A. Virbasius, X. Zhu, and M. R. Green. 1999. Enhancement of TBP binding by activators and general transcription factors. Nature 399:605-609.
    • (1999) Nature , vol.399 , pp. 605-609
    • Li, X.Y.1    Virbasius, A.2    Zhu, X.3    Green, M.R.4
  • 24
    • 0034934774 scopus 로고    scopus 로고
    • Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
    • Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
    • (2001) Nat. Genet. , vol.28 , pp. 327-334
    • Lieb, J.D.1    Liu, X.2    Botstein, D.3    Brown, P.O.4
  • 25
    • 0028275789 scopus 로고
    • TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter
    • Martinez, E., C. M. Chiang, H. Ge, and R. G. Roeder. 1994. TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter. EMBO J. 13:3115-3126.
    • (1994) EMBO J. , vol.13 , pp. 3115-3126
    • Martinez, E.1    Chiang, C.M.2    Ge, H.3    Roeder, R.G.4
  • 26
    • 17444449538 scopus 로고    scopus 로고
    • Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
    • Percudani, R., A. Pavesi, and S. Ottonello. 1997. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J. Mol. Biol. 268:322-330.
    • (1997) J. Mol. Biol. , vol.268 , pp. 322-330
    • Percudani, R.1    Pavesi, A.2    Ottonello, S.3
  • 27
    • 0036898231 scopus 로고    scopus 로고
    • Characterizing the physical genome
    • Pollack, J. R., and V. R. Iyer. 2002. Characterizing the physical genome. Nat. Genet. 32(Suppl.):515-521.
    • (2002) Nat. Genet. , vol.32 , Issue.SUPPL. , pp. 515-521
    • Pollack, J.R.1    Iyer, V.R.2
  • 28
    • 0034609446 scopus 로고    scopus 로고
    • Control of gene expression through regulation of the TATA-binding protein
    • Pugh, B. F. 2000. Control of gene expression through regulation of the TATA-binding protein. Gene 255:1-14.
    • (2000) Gene , vol.255 , pp. 1-14
    • Pugh, B.F.1
  • 29
    • 0025986514 scopus 로고
    • Transcription from a TATA-less promoter requires a multisubunit TFIID complex
    • Pugh, B. F., and R. Tjian. 1991. Transcription from a TATA-less promoter requires a multisubunit TFIID complex. Genes Dev. 5:1935-1945.
    • (1991) Genes Dev. , vol.5 , pp. 1935-1945
    • Pugh, B.F.1    Tjian, R.2
  • 30
    • 0033916138 scopus 로고    scopus 로고
    • The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress
    • Raitt, D. C., A. L. Johnson, A. M. Erkine, K. Makino, B. Morgan, D. S. Gross, and L. H. Johnston. 2000. The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress. Mol. Biol. Cell 11:2335-2347.
    • (2000) Mol. Biol. Cell , vol.11 , pp. 2335-2347
    • Raitt, D.C.1    Johnson, A.L.2    Erkine, A.M.3    Makino, K.4    Morgan, B.5    Gross, D.S.6    Johnston, L.H.7
  • 31
    • 0034515772 scopus 로고    scopus 로고
    • Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
    • Reid, J. L., V. R. Iyer, P. O. Brown, and K. Struhl. 2000. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. Mol. Cell 6:1297-1307.
    • (2000) Mol. Cell , vol.6 , pp. 1297-1307
    • Reid, J.L.1    Iyer, V.R.2    Brown, P.O.3    Struhl, K.4
  • 32
    • 0027459028 scopus 로고
    • Three in one and one in three: It all depends on TBP
    • Rigby, P. W. 1993. Three in one and one in three: it all depends on TBP. Cell 72:7-10.
    • (1993) Cell , vol.72 , pp. 7-10
    • Rigby, P.W.1
  • 33
    • 0345598934 scopus 로고    scopus 로고
    • The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships
    • Roberts, D. N., A. J. Stewart, J. T. Huff, and B. R. Cairns. 2003. The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proc. Natl. Acad. Sci. USA 100:14695-14700.
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 14695-14700
    • Roberts, D.N.1    Stewart, A.J.2    Huff, J.T.3    Cairns, B.R.4
  • 34
    • 0035970117 scopus 로고    scopus 로고
    • Cat8 and Sip4 mediate regulated transcriptional activation of the yeast malate dehydrogenase gene MDH2 by three carbon source-responsive promoter elements
    • Roth, S., and H. J. Schuller. 2001. Cat8 and Sip4 mediate regulated transcriptional activation of the yeast malate dehydrogenase gene MDH2 by three carbon source-responsive promoter elements. Yeast 18:151-162.
    • (2001) Yeast , vol.18 , pp. 151-162
    • Roth, S.1    Schuller, H.J.2
  • 35
    • 0030003064 scopus 로고    scopus 로고
    • Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae
    • Schmitt, A. P., and K. McEntee. 1996. Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93:5777-5782.
    • (1996) Proc. Natl. Acad. Sci. USA , vol.93 , pp. 5777-5782
    • Schmitt, A.P.1    McEntee, K.2
  • 36
    • 0037968357 scopus 로고    scopus 로고
    • Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
    • Sheth, U., and R. Parker. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300:805-808.
    • (2003) Science , vol.300 , pp. 805-808
    • Sheth, U.1    Parker, R.2
  • 37
    • 0024989583 scopus 로고
    • Yeast heat shock factor contains separable transient and sustained response transcriptional activators
    • Sorger, P. K. 1990. Yeast heat shock factor contains separable transient and sustained response transcriptional activators. Cell 62:793-805.
    • (1990) Cell , vol.62 , pp. 793-805
    • Sorger, P.K.1
  • 39
    • 0028329859 scopus 로고
    • Duality of TBP, the universal transcription factor
    • Struhl, K. 1994. Duality of TBP, the universal transcription factor. Science 263:1103-1104.
    • (1994) Science , vol.263 , pp. 1103-1104
    • Struhl, K.1
  • 41
    • 0027026854 scopus 로고
    • The TATA-binding protein is a general transcription factor for RNA polymerase III
    • White, R. J., P. W. Rigby, and S. P. Jackson. 1992. The TATA-binding protein is a general transcription factor for RNA polymerase III. J. Cell Sci. Suppl. 16:1-7.
    • (1992) J. Cell Sci. Suppl. , vol.16 , pp. 1-7
    • White, R.J.1    Rigby, P.W.2    Jackson, S.P.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.