-
1
-
-
1542328960
-
Identification and distinct regulation of yeast TATA box-containing genes
-
Basehoar, A. D., S. J. Zanton, and B. F. Pugh. 2004. Identification and distinct regulation of yeast TATA box-containing genes. Cell 116:699-709.
-
(2004)
Cell
, vol.116
, pp. 699-709
-
-
Basehoar, A.D.1
Zanton, S.J.2
Pugh, B.F.3
-
2
-
-
0029053016
-
Degradation of mRNA in eukaryotes
-
Beelman, C. A., and R. Parker. 1995. Degradation of mRNA in eukaryotes. Cell 81:179-183.
-
(1995)
Cell
, vol.81
, pp. 179-183
-
-
Beelman, C.A.1
Parker, R.2
-
3
-
-
0027522235
-
Cooperative DNA binding of p53 with TFIID (TBP): A possible mechanism for transcriptional activation
-
Chen, X., G. Farmer, H. Zhu, R. Prywes, and C. Prives. 1993. Cooperative DNA binding of p53 with TFIID (TBP): a possible mechanism for transcriptional activation. Genes Dev. 7:1837-1849.
-
(1993)
Genes Dev.
, vol.7
, pp. 1837-1849
-
-
Chen, X.1
Farmer, G.2
Zhu, H.3
Prywes, R.4
Prives, C.5
-
4
-
-
0035859881
-
Kinetic trapping of DNA by transcription factor IIIB
-
Cloutier, T. E., M. D. Librizzi, A. K. Mollah, M. Brenowitz, and I. M. Willis. 2001. Kinetic trapping of DNA by transcription factor IIIB. Proc. Natl. Acad. Sci. USA 98:9581-9586.
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 9581-9586
-
-
Cloutier, T.E.1
Librizzi, M.D.2
Mollah, A.K.3
Brenowitz, M.4
Willis, I.M.5
-
5
-
-
0026531863
-
The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1
-
Comai, L., N. Tanese, and R. Tjian. 1992. The TATA-binding protein and associated factors are integral components of the RNA polymerase I transcription factor, SL1. Cell 68:965-976.
-
(1992)
Cell
, vol.68
, pp. 965-976
-
-
Comai, L.1
Tanese, N.2
Tjian, R.3
-
6
-
-
0026741634
-
The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells
-
Cormack, B. P., and K. Struhl. 1992. The TATA-binding protein is required for transcription by all three nuclear RNA polymerases in yeast cells. Cell 69:685-696.
-
(1992)
Cell
, vol.69
, pp. 685-696
-
-
Cormack, B.P.1
Struhl, K.2
-
7
-
-
0037022595
-
Motl activates and represses transcription by direct, ATPase-dependent mechanisms
-
Dasgupta, A., R. P. Darst, K. J. Martin, C. A. Afshari, and D. T. Auble. 2002. Motl activates and represses transcription by direct, ATPase-dependent mechanisms. Proc. Natl. Acad. Sci. USA 99:2666-2671.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 2666-2671
-
-
Dasgupta, A.1
Darst, R.P.2
Martin, K.J.3
Afshari, C.A.4
Auble, D.T.5
-
8
-
-
0036510779
-
Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae
-
Dieci, G., S. Giuliodori, M. Catellani, R. Percudani, and S. Ottonello. 2002. Intragenic promoter adaptation and facilitated RNA polymerase III recycling in the transcription of SCR1, the 7SL RNA gene of Saccharomyces cerevisiae. J. Biol. Chem. 277:6903-6914.
-
(2002)
J. Biol. Chem.
, vol.277
, pp. 6903-6914
-
-
Dieci, G.1
Giuliodori, S.2
Catellani, M.3
Percudani, R.4
Ottonello, S.5
-
9
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
Gasch, A. P., P. T. Spellman, C. M. Kao, O. Carmel-Harel, M. B. Eisen, G. Storz, D. Botstein, and P. O. Brown. 2000. Genomic expression programs in the response of yeast cells to environmental changes. Mol. Biol. Cell 11:4241-4257.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
10
-
-
0027332365
-
Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB
-
Goodrich, J. A., T. Hoey, C. J. Thut, A. Admon, and R. Tjian. 1993. Drosophila TAFII40 interacts with both a VP16 activation domain and the basal transcription factor TFIIB. Cell 75:519-530.
-
(1993)
Cell
, vol.75
, pp. 519-530
-
-
Goodrich, J.A.1
Hoey, T.2
Thut, C.J.3
Admon, A.4
Tjian, R.5
-
11
-
-
0025864265
-
Roles of TFIID in transcriptional initiation by RNA polymerase II
-
Greenblatt, J. 1991. Roles of TFIID in transcriptional initiation by RNA polymerase II. Cell 66:1067-1070.
-
(1991)
Cell
, vol.66
, pp. 1067-1070
-
-
Greenblatt, J.1
-
12
-
-
0141625270
-
Genome-wide location of yeast RNA polymerase III transcription machinery
-
Harismendy, O., C. G. Gendrel, P. Soularue, X. Gidrol, A. Sentenac, M. Werner, and O. Lefebvre. 2003. Genome-wide location of yeast RNA polymerase III transcription machinery. EMBO J. 22:4738-4747.
-
(2003)
EMBO J.
, vol.22
, pp. 4738-4747
-
-
Harismendy, O.1
Gendrel, C.G.2
Soularue, P.3
Gidrol, X.4
Sentenac, A.5
Werner, M.6
Lefebvre, O.7
-
13
-
-
0035808454
-
The transcriptional activator Cat8p provides a major contribution to the reprogramming of carbon metabolism during the diauxic shift in Saccharomyces cerevisiae
-
Haurie, V., M. Perrot, T. Mini, P. Jeno, F. Sagliocco, and H. Boucherie. 2001. The transcriptional activator Cat8p provides a major contribution to the reprogramming of carbon metabolism during the diauxic shift in Saccharomyces cerevisiae. J. Biol. Chem. 276:76-85.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 76-85
-
-
Haurie, V.1
Perrot, M.2
Mini, T.3
Jeno, P.4
Sagliocco, F.5
Boucherie, H.6
-
14
-
-
0032483576
-
The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor
-
Huang, M., Z. Zhou, and S. J. Elledge. 1998. The DNA replication and damage checkpoint pathways induce transcription by inhibition of the Crt1 repressor. Cell 94:595-605.
-
(1998)
Cell
, vol.94
, pp. 595-605
-
-
Huang, M.1
Zhou, Z.2
Elledge, S.J.3
-
15
-
-
0028068714
-
Facilitated binding of TATA-binding protein to nucleosomal DNA
-
Imbalzano, A. N., H. Kwon, M. R. Green, and R. E. Kingston. 1994. Facilitated binding of TATA-binding protein to nucleosomal DNA. Nature 370:481-485.
-
(1994)
Nature
, vol.370
, pp. 481-485
-
-
Imbalzano, A.N.1
Kwon, H.2
Green, M.R.3
Kingston, R.E.4
-
16
-
-
4444296400
-
Isolation and amplification of array material from yeast
-
D. Bowtell and J. Sambrook (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Iyer, V. R. 2003. Isolation and amplification of array material from yeast, p. 30-34. In D. Bowtell and J. Sambrook (ed.), DNA microarrays: a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(2003)
DNA Microarrays: A Molecular Cloning Manual
, pp. 30-34
-
-
Iyer, V.R.1
-
17
-
-
2942621146
-
Microarray-based detection of DNA protein interactions: Chromatin immunoprecipitation on microarrays
-
D. Bowtell and J. Sambrook (ed.). Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
Iyer, V. R. 2003. Microarray-based detection of DNA protein interactions: chromatin immunoprecipitation on microarrays, p. 453-463. In D. Bowtell and J. Sambrook (ed.), DNA microarrays: a molecular cloning manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, N.Y.
-
(2003)
DNA Microarrays: A Molecular Cloning Manual
, pp. 453-463
-
-
Iyer, V.R.1
-
18
-
-
0035945567
-
Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF
-
Iyer, V. R., C. E. Horak, C. S. Scafe, D. Botstein, M. Snyder, and P. O. Brown. 2001. Genomic binding sites of the yeast cell-cycle transcription factors SBF and MBF. Nature 409:533-538.
-
(2001)
Nature
, vol.409
, pp. 533-538
-
-
Iyer, V.R.1
Horak, C.E.2
Scafe, C.S.3
Botstein, D.4
Snyder, M.5
Brown, P.O.6
-
19
-
-
0032882170
-
Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: Gene expression level and species-specific diversity of codon usage based on multivariate analysis
-
Kanaya, S., Y. Yamada, Y. Kudo, and T. Ikemura. 1999. Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis. Gene 238:143-155.
-
(1999)
Gene
, vol.238
, pp. 143-155
-
-
Kanaya, S.1
Yamada, Y.2
Kudo, Y.3
Ikemura, T.4
-
20
-
-
0642340504
-
The Longhorn Array Database (LAD): An open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD)
-
20 August, posting date. [Online.]
-
Killion, P. J., G. Sherlock, and V. R. Iyer. 20 August 2003, posting date. The Longhorn Array Database (LAD): an open-source, MIAME compliant implementation of the Stanford Microarray Database (SMD). BMC Bioinformatics 4:32. [Online.] http://www.biomedcentral.com/1471-2105/4/32.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 32
-
-
Killion, P.J.1
Sherlock, G.2
Iyer, V.R.3
-
21
-
-
0033542436
-
Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme
-
Kuras, L., and K. Struhl. 1999. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 399:609-613.
-
(1999)
Nature
, vol.399
, pp. 609-613
-
-
Kuras, L.1
Struhl, K.2
-
23
-
-
0033542484
-
Enhancement of TBP binding by activators and general transcription factors
-
Li, X. Y., A. Virbasius, X. Zhu, and M. R. Green. 1999. Enhancement of TBP binding by activators and general transcription factors. Nature 399:605-609.
-
(1999)
Nature
, vol.399
, pp. 605-609
-
-
Li, X.Y.1
Virbasius, A.2
Zhu, X.3
Green, M.R.4
-
24
-
-
0034934774
-
Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association
-
Lieb, J. D., X. Liu, D. Botstein, and P. O. Brown. 2001. Promoter-specific binding of Rap1 revealed by genome-wide maps of protein-DNA association. Nat. Genet. 28:327-334.
-
(2001)
Nat. Genet.
, vol.28
, pp. 327-334
-
-
Lieb, J.D.1
Liu, X.2
Botstein, D.3
Brown, P.O.4
-
25
-
-
0028275789
-
TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter
-
Martinez, E., C. M. Chiang, H. Ge, and R. G. Roeder. 1994. TATA-binding protein-associated factor(s) in TFIID function through the initiator to direct basal transcription from a TATA-less class II promoter. EMBO J. 13:3115-3126.
-
(1994)
EMBO J.
, vol.13
, pp. 3115-3126
-
-
Martinez, E.1
Chiang, C.M.2
Ge, H.3
Roeder, R.G.4
-
26
-
-
17444449538
-
Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae
-
Percudani, R., A. Pavesi, and S. Ottonello. 1997. Transfer RNA gene redundancy and translational selection in Saccharomyces cerevisiae. J. Mol. Biol. 268:322-330.
-
(1997)
J. Mol. Biol.
, vol.268
, pp. 322-330
-
-
Percudani, R.1
Pavesi, A.2
Ottonello, S.3
-
27
-
-
0036898231
-
Characterizing the physical genome
-
Pollack, J. R., and V. R. Iyer. 2002. Characterizing the physical genome. Nat. Genet. 32(Suppl.):515-521.
-
(2002)
Nat. Genet.
, vol.32
, Issue.SUPPL.
, pp. 515-521
-
-
Pollack, J.R.1
Iyer, V.R.2
-
28
-
-
0034609446
-
Control of gene expression through regulation of the TATA-binding protein
-
Pugh, B. F. 2000. Control of gene expression through regulation of the TATA-binding protein. Gene 255:1-14.
-
(2000)
Gene
, vol.255
, pp. 1-14
-
-
Pugh, B.F.1
-
29
-
-
0025986514
-
Transcription from a TATA-less promoter requires a multisubunit TFIID complex
-
Pugh, B. F., and R. Tjian. 1991. Transcription from a TATA-less promoter requires a multisubunit TFIID complex. Genes Dev. 5:1935-1945.
-
(1991)
Genes Dev.
, vol.5
, pp. 1935-1945
-
-
Pugh, B.F.1
Tjian, R.2
-
30
-
-
0033916138
-
The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress
-
Raitt, D. C., A. L. Johnson, A. M. Erkine, K. Makino, B. Morgan, D. S. Gross, and L. H. Johnston. 2000. The Skn7 response regulator of Saccharomyces cerevisiae interacts with Hsf1 in vivo and is required for the induction of heat shock genes by oxidative stress. Mol. Biol. Cell 11:2335-2347.
-
(2000)
Mol. Biol. Cell
, vol.11
, pp. 2335-2347
-
-
Raitt, D.C.1
Johnson, A.L.2
Erkine, A.M.3
Makino, K.4
Morgan, B.5
Gross, D.S.6
Johnston, L.H.7
-
31
-
-
0034515772
-
Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase
-
Reid, J. L., V. R. Iyer, P. O. Brown, and K. Struhl. 2000. Coordinate regulation of yeast ribosomal protein genes is associated with targeted recruitment of Esa1 histone acetylase. Mol. Cell 6:1297-1307.
-
(2000)
Mol. Cell
, vol.6
, pp. 1297-1307
-
-
Reid, J.L.1
Iyer, V.R.2
Brown, P.O.3
Struhl, K.4
-
32
-
-
0027459028
-
Three in one and one in three: It all depends on TBP
-
Rigby, P. W. 1993. Three in one and one in three: it all depends on TBP. Cell 72:7-10.
-
(1993)
Cell
, vol.72
, pp. 7-10
-
-
Rigby, P.W.1
-
33
-
-
0345598934
-
The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships
-
Roberts, D. N., A. J. Stewart, J. T. Huff, and B. R. Cairns. 2003. The RNA polymerase III transcriptome revealed by genome-wide localization and activity-occupancy relationships. Proc. Natl. Acad. Sci. USA 100:14695-14700.
-
(2003)
Proc. Natl. Acad. Sci. USA
, vol.100
, pp. 14695-14700
-
-
Roberts, D.N.1
Stewart, A.J.2
Huff, J.T.3
Cairns, B.R.4
-
34
-
-
0035970117
-
Cat8 and Sip4 mediate regulated transcriptional activation of the yeast malate dehydrogenase gene MDH2 by three carbon source-responsive promoter elements
-
Roth, S., and H. J. Schuller. 2001. Cat8 and Sip4 mediate regulated transcriptional activation of the yeast malate dehydrogenase gene MDH2 by three carbon source-responsive promoter elements. Yeast 18:151-162.
-
(2001)
Yeast
, vol.18
, pp. 151-162
-
-
Roth, S.1
Schuller, H.J.2
-
35
-
-
0030003064
-
Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae
-
Schmitt, A. P., and K. McEntee. 1996. Msn2p, a zinc finger DNA-binding protein, is the transcriptional activator of the multistress response in Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 93:5777-5782.
-
(1996)
Proc. Natl. Acad. Sci. USA
, vol.93
, pp. 5777-5782
-
-
Schmitt, A.P.1
McEntee, K.2
-
36
-
-
0037968357
-
Decapping and decay of messenger RNA occur in cytoplasmic processing bodies
-
Sheth, U., and R. Parker. 2003. Decapping and decay of messenger RNA occur in cytoplasmic processing bodies. Science 300:805-808.
-
(2003)
Science
, vol.300
, pp. 805-808
-
-
Sheth, U.1
Parker, R.2
-
37
-
-
0024989583
-
Yeast heat shock factor contains separable transient and sustained response transcriptional activators
-
Sorger, P. K. 1990. Yeast heat shock factor contains separable transient and sustained response transcriptional activators. Cell 62:793-805.
-
(1990)
Cell
, vol.62
, pp. 793-805
-
-
Sorger, P.K.1
-
38
-
-
0031742022
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization
-
Spellman, P. T., G. Sherlock, M. Q. Zhang, V. R. Iyer, K. Anders, M. B. Eisen, P. O. Brown, D. Botstein, and B. Futcher. 1998. Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization. Mol. Biol. Cell 9:3273-3297.
-
(1998)
Mol. Biol. Cell
, vol.9
, pp. 3273-3297
-
-
Spellman, P.T.1
Sherlock, G.2
Zhang, M.Q.3
Iyer, V.R.4
Anders, K.5
Eisen, M.B.6
Brown, P.O.7
Botstein, D.8
Futcher, B.9
-
39
-
-
0028329859
-
Duality of TBP, the universal transcription factor
-
Struhl, K. 1994. Duality of TBP, the universal transcription factor. Science 263:1103-1104.
-
(1994)
Science
, vol.263
, pp. 1103-1104
-
-
Struhl, K.1
-
40
-
-
0037197892
-
Precision and functional specificity in mRNA decay
-
Wang, Y., C. L. Liu, J. D. Storey, R. J. Tibshirani, D. Herschlag, and P. O. Brown. 2002. Precision and functional specificity in mRNA decay. Proc. Natl. Acad. Sci. USA 99:5860-5865.
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 5860-5865
-
-
Wang, Y.1
Liu, C.L.2
Storey, J.D.3
Tibshirani, R.J.4
Herschlag, D.5
Brown, P.O.6
-
41
-
-
0027026854
-
The TATA-binding protein is a general transcription factor for RNA polymerase III
-
White, R. J., P. W. Rigby, and S. P. Jackson. 1992. The TATA-binding protein is a general transcription factor for RNA polymerase III. J. Cell Sci. Suppl. 16:1-7.
-
(1992)
J. Cell Sci. Suppl.
, vol.16
, pp. 1-7
-
-
White, R.J.1
Rigby, P.W.2
Jackson, S.P.3
|