메뉴 건너뛰기




Volumn 71, Issue 6, 2008, Pages 554-562

Molecular modeling and docking analysis of Entamoeba histolytica glyceraldehyde-3 phosphate dehydrogenase, a potential target enzyme for anti-protozoal drug development

Author keywords

Docking; Energy minimization; Entamoeba histolytica; Glyceraldehyde 3 phosphate dehydrogenase; Glycolytic pathway; Molecular modeling

Indexed keywords

3 (1,3 BENZODIOXOL 5 YL) 6 [(1H INDOL 3 YLMETHYLENE)AMINO] 2H CHROMEN 2 ONE; 3 (1,3 BENZODIOXOL 5 YL) 6 [(2 FURYLMETHYLENE)AMINO] 2H CHROMEN 2 ONE; 3 (1,3 BENZODIOXOL 5 YL) 6 [(H PYRROL 2 YLMETHYLENE)AMINO] 2H CHROMEN 2 ONE; 3 (1,3 BENZODIOXOL 5 YL) 6 [(THIEN 2 YLMETHYLENE)AMINO] 2H CHROMEN 2 ONE; ANTIPROTOZOAL AGENT; ARGININE; COUMARIN DERIVATIVE; DEXTRO GLYCERATE 1,3 BISPHOSPHATE; GLYCERALDEHYDE 3 PHOSPHATE; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; NICOTINAMIDE ADENINE DINUCLEOTIDE; PHOSPHATE; SERINE; THREONINE;

EID: 43949120770     PISSN: 17470277     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1747-0285.2008.00666.x     Document Type: Article
Times cited : (15)

References (40)
  • 2
    • 0031552206 scopus 로고    scopus 로고
    • Amoebiasis
    • World Health Organisation (
    • World Health Organisation (1997) Amoebiasis. WHO Wkly Epidemiol Rec 72 : 97 100.
    • (1997) WHO Wkly Epidemiol Rec , vol.72 , pp. 97-100
  • 4
    • 0029018229 scopus 로고
    • Amebiasis
    • Ravdin J.I. (1995) Amebiasis. Clin Infect Dis 20 : 1453 1466.
    • (1995) Clin Infect Dis , vol.20 , pp. 1453-1466
    • Ravdin, J.I.1
  • 5
    • 0030950248 scopus 로고    scopus 로고
    • Amoebapores
    • Leippe M. (1997) Amoebapores. Parasitol Today 13 : 178 183.
    • (1997) Parasitol Today , vol.13 , pp. 178-183
    • Leippe, M.1
  • 6
    • 0020056915 scopus 로고
    • The collagenase of Entamoeba histolytica
    • Munoz M.L., Calderon J., Rojkind M. (1982) The collagenase of Entamoeba histolytica. J Exp Med 155 : 42 51.
    • (1982) J Exp Med , vol.155 , pp. 42-51
    • Munoz, M.L.1    Calderon, J.2    Rojkind, M.3
  • 8
    • 43949145084 scopus 로고
    • Reynolds, J.E.F., editor (. London: The Pharmaceutical Press. p., 1034.
    • Reynolds J.E.F., editor (1982) Martindale, the extra pharmacopoeia, 28th edn. London : The Pharmaceutical Press p. 1004, 1006 1031, 1034.
    • (1982) Martindale, the Extra Pharmacopoeia, 28th Edn. , vol.1004 , pp. 1006-1031
  • 9
    • 0027156517 scopus 로고
    • Metronidazole and drug resistance
    • Johnson P.J. (1993) Metronidazole and drug resistance. Parasitol Today 9 : 183 186.
    • (1993) Parasitol Today , vol.9 , pp. 183-186
    • Johnson, P.J.1
  • 10
    • 0021994147 scopus 로고
    • Isolation and characterization of Entamoeba histolytica mutants resistant to emetine
    • Orozco E., Hernandez F., Rodriiguez M. (1985) Isolation and characterization of Entamoeba histolytica mutants resistant to emetine. Mol Biochem Parasitol 15 : 49 59.
    • (1985) Mol Biochem Parasitol , vol.15 , pp. 49-59
    • Orozco, E.1    Hernandez, F.2    Rodriiguez, M.3
  • 11
    • 0025006689 scopus 로고
    • Natural products and the development of selective antiprotozoal drugs
    • Wright C.W., Phillipson J.D. (1990) Natural products and the development of selective antiprotozoal drugs. Phytother Res 4 : 127 139.
    • (1990) Phytother Res , vol.4 , pp. 127-139
    • Wright, C.W.1    Phillipson, J.D.2
  • 13
    • 0031022145 scopus 로고    scopus 로고
    • Entamoeba histolytica and Entamoeba dispar infection in children in Bangladesh
    • Haque R., Faruque A.S., Petri W.A. Jr. (1997) Entamoeba histolytica and Entamoeba dispar infection in children in Bangladesh. Arch Med Res 28 : 317 318.
    • (1997) Arch Med Res , vol.28 , pp. 317-318
    • Haque, R.1    Faruque, A.S.2    Petri Jr., W.A.3
  • 14
    • 0032429173 scopus 로고    scopus 로고
    • Field study on the distribution of Entamoeba histolytica and Entamoeba dispar in northern Philippines by polymerase chain reaction
    • Rivera W.L., Tachibana H., Kanabara H. (1998) Field study on the distribution of Entamoeba histolytica and Entamoeba dispar in northern Philippines by polymerase chain reaction. Am J Trop Med Hyg 59 : 916 921.
    • (1998) Am J Trop Med Hyg , vol.59 , pp. 916-921
    • Rivera, W.L.1    Tachibana, H.2    Kanabara, H.3
  • 15
    • 0030740690 scopus 로고    scopus 로고
    • Differentiation of Entamoeba histolytica and Entamoeba dispar from German travelers and residents of endemic areas
    • Walderich B., Weber A., Knobloch J. (1997) Differentiation of Entamoeba histolytica and Entamoeba dispar from German travelers and residents of endemic areas. Am J Trop Med Hyg 57 : 70 74.
    • (1997) Am J Trop Med Hyg , vol.57 , pp. 70-74
    • Walderich, B.1    Weber, A.2    Knobloch, J.3
  • 16
    • 0343293988 scopus 로고    scopus 로고
    • Pathogenesis of intestinal amebiasis: From molecules to disease
    • Espinosa-Cantellano M., Martínez-Palomo A. (2000) Pathogenesis of intestinal amebiasis: from molecules to disease. Clin Microbiol Rev 13 : 318 331.
    • (2000) Clin Microbiol Rev , vol.13 , pp. 318-331
    • Espinosa-Cantellano, M.1    Martínez-Palomo, A.2
  • 19
    • 0023901879 scopus 로고
    • Primary structure of glyceraldehyde 3-phosphate dehydrogenase deduced from the nucleotide sequence of the thermophilic archaebacterium Methanothermus fervidus
    • Fabry S., Hensel R. (1988) Primary structure of glyceraldehyde 3-phosphate dehydrogenase deduced from the nucleotide sequence of the thermophilic archaebacterium Methanothermus fervidus. Gene 64 : 189 197.
    • (1988) Gene , vol.64 , pp. 189-197
    • Fabry, S.1    Hensel, R.2
  • 20
    • 0024613893 scopus 로고
    • Nucleotide sequence of the glyceraldehyde-3-phosphate dehydrogenase gene from the mesophilic methanogenic archaebacteria Methanobacterium bryantii and Methanbacterium formicicum
    • Fabry S., Lang J., Niermann T., Vingron M., Hensel R. (1989) Nucleotide sequence of the glyceraldehyde-3-phosphate dehydrogenase gene from the mesophilic methanogenic archaebacteria Methanobacterium bryantii and Methanbacterium formicicum. Eur J Biochem 179 : 405 413.
    • (1989) Eur J Biochem , vol.179 , pp. 405-413
    • Fabry, S.1    Lang, J.2    Niermann, T.3    Vingron, M.4    Hensel, R.5
  • 21
    • 0025279399 scopus 로고
    • Glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei: Characterisation of the enzyme, cloning and sequencing of the gene, and expression in Escherichia coli
    • Zwickl P., Fabry S., Bogedain C., Haas A., Hensel R. (1990) Glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaebacterium Pyrococcus woesei: characterisation of the enzyme, cloning and sequencing of the gene, and expression in Escherichia coli. J Bacteriol 172 : 4329 4338.
    • (1990) J Bacteriol , vol.172 , pp. 4329-4338
    • Zwickl, P.1    Fabry, S.2    Bogedain, C.3    Haas, A.4    Hensel, R.5
  • 22
    • 0028867858 scopus 로고
    • Cloning, sequencing and expression in Escherichia coli of a Streptomyces aureofaciens gene encoding glyceraldehyde-3-phosphate dehydrogenase
    • Kormanec J., Lempelova A., Farkasovsky M., Homerova D. (1995) Cloning, sequencing and expression in Escherichia coli of a Streptomyces aureofaciens gene encoding glyceraldehyde-3-phosphate dehydrogenase. Gene 165 : 77 80.
    • (1995) Gene , vol.165 , pp. 77-80
    • Kormanec, J.1    Lempelova, A.2    Farkasovsky, M.3    Homerova, D.4
  • 23
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch A., Apweiler R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 28 : 45 48.
    • (2000) Nucleic Acids Res , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 24
    • 0032562541 scopus 로고    scopus 로고
    • Crystal structure of Leishmania mexicana glycosomal glyceraldehyde-3- phosphate dehydrogenase in a new crystal form confirms the putative physiological active site structure
    • Kim H., Hol W.G. (1998) Crystal structure of Leishmania mexicana glycosomal glyceraldehyde-3-phosphate dehydrogenase in a new crystal form confirms the putative physiological active site structure. J Mol Biol 278 : 5 11.
    • (1998) J Mol Biol , vol.278 , pp. 5-11
    • Kim, H.1    Hol, W.G.2
  • 25
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODEL and Swiss-Pdb Viewer: An environment for comparative protein modelling
    • Guex N., Peitsch M.C. (1997) SWISS-MODEL and Swiss-Pdb Viewer: an environment for comparative protein modelling. Electrophoresis 18 : 2714 2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 26
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgins D.G., Gibson T.J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22 : 4673 4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 28
    • 0027136282 scopus 로고
    • Comparative protein modelling by satisfaction of spatial restraints
    • Sali A., Blundell T.L. (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234 : 779 815.
    • (1993) J Mol Biol , vol.234 , pp. 779-815
    • Sali, A.1    Blundell, T.L.2
  • 29
    • 0000243829 scopus 로고
    • PROCHECK: A program to check the stereochemical quality of protein structures
    • Laskowski R.A., MacArthur M.W., Moss D.S., Thornton J.M. (1993) PROCHECK: a program to check the stereochemical quality of protein structures. J Appl Cryst 26 : 283 291.
    • (1993) J Appl Cryst , vol.26 , pp. 283-291
    • Laskowski, R.A.1    MacArthur, M.W.2    Moss, D.S.3    Thornton, J.M.4
  • 30
    • 33646527618 scopus 로고    scopus 로고
    • Bioprospecting for drug research and functional foods for the prevention of diseases - Role of flavonoids in drug development
    • Sharma D.K. (2006) Bioprospecting for drug research and functional foods for the prevention of diseases - role of flavonoids in drug development. J Sci Ind Res 65 : 391 401.
    • (2006) J Sci Ind Res , vol.65 , pp. 391-401
    • Sharma, D.K.1
  • 31
    • 43949085844 scopus 로고
    • Chemotherapy of amoebiasis
    • In: Schnitzer, R.J., Hawking, F., editors. London: Academic Press. p. 355.
    • Woolfe G. (1963) Chemotherapy of amoebiasis. In : Schnitzer R.J., Hawking F., editors. Experimental Chemotherapy, Vol. 1. London : Academic Press p. 355.
    • (1963) Experimental Chemotherapy , vol.1
    • Woolfe, G.1
  • 32
    • 0034547932 scopus 로고    scopus 로고
    • Natural products as potential anti-parasitic drugs
    • Kayser O., Kidderlen A.F., Croft S.L. (2000) Natural products as potential anti-parasitic drugs. Acta Trop 77 : 307 314.
    • (2000) Acta Trop , vol.77 , pp. 307-314
    • Kayser, O.1    Kidderlen, A.F.2    Croft, S.L.3
  • 33
    • 4444264844 scopus 로고    scopus 로고
    • New 3-piperonylcoumarins as inhibitors of glycosomal glyceraldehyde-3- phosphate dehydrogenase (gGAPDH) from Trypanosoma cruzi
    • de Marchi A.A., Castilho M.S., Nascimento P.G.B., Archanjo F.C., Ponte G.D., Oliva G., Pupo M.T. (2004) New 3-piperonylcoumarins as inhibitors of glycosomal glyceraldehyde-3-phosphate dehydrogenase (gGAPDH) from Trypanosoma cruzi. Bioorg Med Chem 12 : 4823 4833.
    • (2004) Bioorg Med Chem , vol.12 , pp. 4823-4833
    • De Marchi, A.A.1    Castilho, M.S.2    Nascimento, P.G.B.3    Archanjo, F.C.4    Ponte, G.D.5    Oliva, G.6    Pupo, M.T.7
  • 35
    • 0029633168 scopus 로고
    • GROMACS: A message-passing parallel molecular dynamics implementation
    • Berendsen H.J., van der Spoel D., van Drunen R. (1995) GROMACS: a message-passing parallel molecular dynamics implementation. Comp Phys Comm 91 : 43 56.
    • (1995) Comp Phys Comm , vol.91 , pp. 43-56
    • Berendsen, H.J.1    Van Der Spoel, D.2    Van Drunen, R.3
  • 36
    • 0035789518 scopus 로고    scopus 로고
    • Gromacs 3.0: A package for molecular simulation and trajectory analysis
    • Lindahl E., Hess B., van der Spoel D. (2001) Gromacs 3.0: a package for molecular simulation and trajectory analysis. J Mol Med 7 : 306 317.
    • (2001) J Mol Med , vol.7 , pp. 306-317
    • Lindahl, E.1    Hess, B.2    Van Der Spoel, D.3
  • 37
    • 0030256107 scopus 로고    scopus 로고
    • Molecular dynamics simulations of peptides from BPTI: A closer look at amide-aromatic interactions
    • van der Spoel D., van Buuren A.R., Tieleman D.P., Berendsen H.J. (1996) Molecular dynamics simulations of peptides from BPTI: a closer look at amide-aromatic interactions. J Biomol NMR 8 : 229 238.
    • (1996) J Biomol NMR , vol.8 , pp. 229-238
    • Van Der Spoel, D.1    Van Buuren, A.R.2    Tieleman, D.P.3    Berendsen, H.J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.