메뉴 건너뛰기




Volumn 376, Issue 1, 2008, Pages 90-100

Full molecular characterization of a simian immunodeficiency virus, SIVwrcpbt from Temminck's red colobus (Piliocolobus badius temminckii) from Abuko Nature Reserve, The Gambia

Author keywords

Cross species transmission; Evolution; Genetic diversity; Red colobus; SIVwrc

Indexed keywords

AMINO ACID SEQUENCE; ARTICLE; COLOBINAE; FECES ANALYSIS; GAMBIA; GENE AMPLIFICATION; GENE SEQUENCE; GENETIC VARIABILITY; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE ALIGNMENT; SIMIAN IMMUNODEFICIENCY VIRUS;

EID: 43749115737     PISSN: 00426822     EISSN: 10960341     Source Type: Journal    
DOI: 10.1016/j.virol.2008.01.049     Document Type: Article
Times cited : (22)

References (53)
  • 1
    • 33947712552 scopus 로고    scopus 로고
    • Full-length sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages
    • Aghokeng A.F., Bailes E., Loul S., Courgnaud V., Mpoudi-Ngole E., Sharp P.M., Delaporte E., and Peeters M. Full-length sequence analysis of SIVmus in wild populations of mustached monkeys (Cercopithecus cephus) from Cameroon provides evidence for two co-circulating SIVmus lineages. Virology 360 (2007) 407-418
    • (2007) Virology , vol.360 , pp. 407-418
    • Aghokeng, A.F.1    Bailes, E.2    Loul, S.3    Courgnaud, V.4    Mpoudi-Ngole, E.5    Sharp, P.M.6    Delaporte, E.7    Peeters, M.8
  • 4
    • 0028180684 scopus 로고
    • Chimpanzees-red colobus monkeys: a predator-prey system
    • Boesch C. Chimpanzees-red colobus monkeys: a predator-prey system. Behaviour 47 (1994) 1135-1148
    • (1994) Behaviour , vol.47 , pp. 1135-1148
    • Boesch, C.1
  • 5
    • 0024652682 scopus 로고
    • Hunting behavior of wild chimpanzees in the Tai National Park
    • Boesch C., and Boesch-Achermann H. Hunting behavior of wild chimpanzees in the Tai National Park. Am. J. Phys. Anthropol. 78 (1989) 547-573
    • (1989) Am. J. Phys. Anthropol. , vol.78 , pp. 547-573
    • Boesch, C.1    Boesch-Achermann, H.2
  • 6
    • 43749101903 scopus 로고    scopus 로고
    • Caspary, H.U., Koné, I., Prouot, C., and De Pauw, M., (2001). La chasse et la filière viande de brousse dans l'espace Taï, Côte-d'Ivoire. Tropenbos Côte-d'Ivoire. Séries 2, 170 p.
    • Caspary, H.U., Koné, I., Prouot, C., and De Pauw, M., (2001). La chasse et la filière viande de brousse dans l'espace Taï, Côte-d'Ivoire. Tropenbos Côte-d'Ivoire. Séries 2, 170 p.
  • 7
    • 0035169607 scopus 로고    scopus 로고
    • Characterization of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family
    • Courgnaud V., Pourrut X., Bibollet-Ruche F., Mpoudi-Ngole E., Bourgeois A., Delaporte E., and Peeters M. Characterization of a novel simian immunodeficiency virus from guereza colobus monkeys (Colobus guereza) in Cameroon: a new lineage in the nonhuman primate lentivirus family. J. Virol. 75 (2001) 857-866
    • (2001) J. Virol. , vol.75 , pp. 857-866
    • Courgnaud, V.1    Pourrut, X.2    Bibollet-Ruche, F.3    Mpoudi-Ngole, E.4    Bourgeois, A.5    Delaporte, E.6    Peeters, M.7
  • 8
    • 0037213282 scopus 로고    scopus 로고
    • Partial molecular characterization of two simian immunodeficiency viruses (SIV) from African colobids: SIVwrc from western red colobus (Piliocolobus badius) and SIVolc from olive colobus (Procolobus verus)
    • Courgnaud V., Formenty P., Akoua-Koffi C., Noe R., Boesch C., Delaporte E., and Peeters M. Partial molecular characterization of two simian immunodeficiency viruses (SIV) from African colobids: SIVwrc from western red colobus (Piliocolobus badius) and SIVolc from olive colobus (Procolobus verus). J. Virol. 77 (2003) 744-748
    • (2003) J. Virol. , vol.77 , pp. 744-748
    • Courgnaud, V.1    Formenty, P.2    Akoua-Koffi, C.3    Noe, R.4    Boesch, C.5    Delaporte, E.6    Peeters, M.7
  • 9
    • 20744440450 scopus 로고    scopus 로고
    • Characterization of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti)
    • Dazza M.C., Ekwalanga M., Nende M., Shamamba K.B., Bitshi P., Paraskevis D., and Saragosti S. Characterization of a novel vpu-harboring simian immunodeficiency virus from a Dent's Mona monkey (Cercopithecus mona denti). J. Virol. 79 (2005) 8560-8571
    • (2005) J. Virol. , vol.79 , pp. 8560-8571
    • Dazza, M.C.1    Ekwalanga, M.2    Nende, M.3    Shamamba, K.B.4    Bitshi, P.5    Paraskevis, D.6    Saragosti, S.7
  • 10
    • 1842481416 scopus 로고    scopus 로고
    • African climate change and faunal evolution during the Pliocene-Pleistocene
    • deMenocal P.B. African climate change and faunal evolution during the Pliocene-Pleistocene. Earth Planet Sci. Lett. 220 (2004) 3-24
    • (2004) Earth Planet Sci. Lett. , vol.220 , pp. 3-24
    • deMenocal, P.B.1
  • 11
    • 0036017382 scopus 로고    scopus 로고
    • rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny
    • Dimmic M.W., Rest J.S., Mindell D.P., and Goldstein R.A. rtREV: an amino acid substitution matrix for inference of retrovirus and reverse transcriptase phylogeny. J. Mol. Evol. 55 (2002) 65-73
    • (2002) J. Mol. Evol. , vol.55 , pp. 65-73
    • Dimmic, M.W.1    Rest, J.S.2    Mindell, D.P.3    Goldstein, R.A.4
  • 12
    • 0030305754 scopus 로고    scopus 로고
    • The phylogeny of Old World monkeys
    • Disotell T.R. The phylogeny of Old World monkeys. Evol. Anthropol. 5 (1996) 18-24
    • (1996) Evol. Anthropol. , vol.5 , pp. 18-24
    • Disotell, T.R.1
  • 13
    • 43749083336 scopus 로고
    • Monkeys in the Pirang forest.
    • Pirang. Ecological Investigations in a Forest Island in the Gambia. Ellenberg H., Galat-Luong A., Von Maydel H.-J., Mü uhlenberg M., Panzer K.F., Schmidt-Lorenz R.S., Sumser M., and Szolnoki T.W. (Eds), Hamburg, Warnke Verlag, Reinbek
    • Galat-Luong A. Monkeys in the Pirang forest. In: Ellenberg H., Galat-Luong A., Von Maydel H.-J., Mü uhlenberg M., Panzer K.F., Schmidt-Lorenz R.S., Sumser M., and Szolnoki T.W. (Eds). Pirang. Ecological Investigations in a Forest Island in the Gambia. Stiftung Walderhaltung in Afrika, Hamburg, and Bundesforschungsanstalt für Forst- und Holzwirtschaft (1988), Hamburg, Warnke Verlag, Reinbek
    • (1988) Stiftung Walderhaltung in Afrika, Hamburg, and Bundesforschungsanstalt für Forst- und Holzwirtschaft
    • Galat-Luong, A.1
  • 14
    • 20744440192 scopus 로고    scopus 로고
    • Conservation and survival adaptations of Temminck's red colobus (Procolobus badius temminckii), in Senegal
    • Galat-Luong A., and Galat G. Conservation and survival adaptations of Temminck's red colobus (Procolobus badius temminckii), in Senegal. Int. J. Primatol. 26 (2005) 585-603
    • (2005) Int. J. Primatol. , vol.26 , pp. 585-603
    • Galat-Luong, A.1    Galat, G.2
  • 15
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny
    • Galtier N., Gouy M., and Gautier C. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12 (1996) 543-548
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2    Gautier, C.3
  • 17
    • 0004084108 scopus 로고    scopus 로고
    • Smithsonian Institution Press, Washington
    • Groves C. Primate Taxonomy (2001), Smithsonian Institution Press, Washington
    • (2001) Primate Taxonomy
    • Groves, C.1
  • 18
    • 0007955798 scopus 로고    scopus 로고
    • Evolutionary processes implicit in distribution patterns of modern African mammals
    • Bromage T.G., and Schrenk F. (Eds), Oxford University Press, New York
    • Grubb P. Evolutionary processes implicit in distribution patterns of modern African mammals. In: Bromage T.G., and Schrenk F. (Eds). African Biogeography, Climate Change & Human Evolution (1999), Oxford University Press, New York
    • (1999) African Biogeography, Climate Change & Human Evolution
    • Grubb, P.1
  • 20
    • 0034723385 scopus 로고    scopus 로고
    • AIDS as a zoonosis: scientific and public health implications
    • Hahn B.H., Shaw G.M., De Cock K.M., and Sharp P.M. AIDS as a zoonosis: scientific and public health implications. Science 287 (2000) 607-614
    • (2000) Science , vol.287 , pp. 607-614
    • Hahn, B.H.1    Shaw, G.M.2    De Cock, K.M.3    Sharp, P.M.4
  • 24
    • 0037302380 scopus 로고    scopus 로고
    • Noninvasive detection of new simian immunodeficiency virus lineages in captive sooty mangabeys: ability to amplify virion RNA from fecal samples correlates with viral load in plasma
    • Ling B., Santiago M.L., Meleth S., Gormus B., McClure H.M., Apetrei C., Hahn B.H., and Marx P.A. Noninvasive detection of new simian immunodeficiency virus lineages in captive sooty mangabeys: ability to amplify virion RNA from fecal samples correlates with viral load in plasma. J. Virol. 77 (2003) 2214-2226
    • (2003) J. Virol. , vol.77 , pp. 2214-2226
    • Ling, B.1    Santiago, M.L.2    Meleth, S.3    Gormus, B.4    McClure, H.M.5    Apetrei, C.6    Hahn, B.H.7    Marx, P.A.8
  • 26
    • 36749057401 scopus 로고    scopus 로고
    • Prevalence and genetic diversity of simian immunodeficiency virus infection in wild-living red colobus monkeys (Piliocolobus badius badius) from the Taï forest, Côte d'Ivoire
    • Locatelli S., Liegeois F., Lafay B., Roeder A.D., Bruford M.W., Formenty P., Noë R., Delaporte E., and Peeters M. Prevalence and genetic diversity of simian immunodeficiency virus infection in wild-living red colobus monkeys (Piliocolobus badius badius) from the Taï forest, Côte d'Ivoire. Infect. Genet. Evol. 8 (2008) 1-14
    • (2008) Infect. Genet. Evol. , vol.8 , pp. 1-14
    • Locatelli, S.1    Liegeois, F.2    Lafay, B.3    Roeder, A.D.4    Bruford, M.W.5    Formenty, P.6    Noë, R.7    Delaporte, E.8    Peeters, M.9
  • 28
    • 0035658023 scopus 로고    scopus 로고
    • HIV-1 and Ebola virus encode small peptide motifs that recruit Tsg101 to sites of particle assembly to facilitate egress
    • Martin-Serrano J., Zang T., and Bieniasz P.D. HIV-1 and Ebola virus encode small peptide motifs that recruit Tsg101 to sites of particle assembly to facilitate egress. Nat. Med. 7 (2001) 1313-1319
    • (2001) Nat. Med. , vol.7 , pp. 1313-1319
    • Martin-Serrano, J.1    Zang, T.2    Bieniasz, P.D.3
  • 29
    • 20744456026 scopus 로고    scopus 로고
    • Update on the search for Miss Waldron's red colobus monkey
    • McGraw W.S. Update on the search for Miss Waldron's red colobus monkey. Int. J. Primatol. 26 (2005)
    • (2005) Int. J. Primatol. , vol.26
    • McGraw, W.S.1
  • 30
    • 0032789837 scopus 로고    scopus 로고
    • Demographic influences on the hunting behavior of chimpanzees
    • Mitani J.C., and Watts D.P. Demographic influences on the hunting behavior of chimpanzees. Am. J. Phys. Anthropol. 109 (1999) 439-454
    • (1999) Am. J. Phys. Anthropol. , vol.109 , pp. 439-454
    • Mitani, J.C.1    Watts, D.P.2
  • 31
    • 0002011018 scopus 로고
    • The diversity of the living colobines
    • Davies A.G., and Oates J.F. (Eds), Cambridge University Press, Cambridge
    • Oates J.F., Davies A.G., and Delson E. The diversity of the living colobines. In: Davies A.G., and Oates J.F. (Eds). Colobine Monkeys: Their Ecology, Behaviour, and Evolution (1994), Cambridge University Press, Cambridge 45-74
    • (1994) Colobine Monkeys: Their Ecology, Behaviour, and Evolution , pp. 45-74
    • Oates, J.F.1    Davies, A.G.2    Delson, E.3
  • 35
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: testing the model of DNA substitution
    • Posada D., and Crandall K.A. MODELTEST: testing the model of DNA substitution. Bioinformatics 14 (1998) 817-818
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 36
    • 0030858622 scopus 로고    scopus 로고
    • Equine infectious anemia virus utilizes a YXXL motif within the late assembly domain of the Gag p9 protein
    • Puffer B.A., Parent L.J., Wills J.W., and Montelaro R.C. Equine infectious anemia virus utilizes a YXXL motif within the late assembly domain of the Gag p9 protein. J. Virol. 71 (1997) 6541-6546
    • (1997) J. Virol. , vol.71 , pp. 6541-6546
    • Puffer, B.A.1    Parent, L.J.2    Wills, J.W.3    Montelaro, R.C.4
  • 37
    • 17644414990 scopus 로고    scopus 로고
    • Impact of commercial hunting on monkey populations in the Taï region, Côte d'Ivoire
    • Refisch J., and Koné I. Impact of commercial hunting on monkey populations in the Taï region, Côte d'Ivoire. Biotropica 37 (2005) 136-144
    • (2005) Biotropica , vol.37 , pp. 136-144
    • Refisch, J.1    Koné, I.2
  • 38
    • 0041386108 scopus 로고    scopus 로고
    • MrBayes 3: Bayesian phylogenetic inference under mixed models
    • Ronquist F., and Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19 (2003) 1572-1574
    • (2003) Bioinformatics , vol.19 , pp. 1572-1574
    • Ronquist, F.1    Huelsenbeck, J.P.2
  • 41
    • 0028235526 scopus 로고
    • Patterns of predation by chimpanzees on red colobus monkeys in Gombe National Park, 1982-1991
    • Stanford C.B., Wallis J., Matama H., and Goodall J. Patterns of predation by chimpanzees on red colobus monkeys in Gombe National Park, 1982-1991. Am. J. Phys. Anthropol. 94 (1994) 213-228
    • (1994) Am. J. Phys. Anthropol. , vol.94 , pp. 213-228
    • Stanford, C.B.1    Wallis, J.2    Matama, H.3    Goodall, J.4
  • 42
    • 0028604987 scopus 로고
    • Philopatry and affiliation among red colobus
    • Starin E.D. Philopatry and affiliation among red colobus. Behaviour 130 (1994) 253-270
    • (1994) Behaviour , vol.130 , pp. 253-270
    • Starin, E.D.1
  • 43
    • 33646683588 scopus 로고    scopus 로고
    • Patterns of food transfer in Temminck's red colobus
    • Starin E.D. Patterns of food transfer in Temminck's red colobus. Aggress. Behav. 32 (2006) 181-186
    • (2006) Aggress. Behav. , vol.32 , pp. 181-186
    • Starin, E.D.1
  • 44
    • 17144430106 scopus 로고    scopus 로고
    • Red colobus as prey: the leaping habits of five sympatric Old World monkeys
    • Stern M., and Goldstone R. Red colobus as prey: the leaping habits of five sympatric Old World monkeys. Folia Primatol. (Basel) 76 (2005) 100-112
    • (2005) Folia Primatol. (Basel) , vol.76 , pp. 100-112
    • Stern, M.1    Goldstone, R.2
  • 45
    • 0034520059 scopus 로고    scopus 로고
    • Recognizing hominoid-modified bones: the taphonomy of colobus bones partially digested by free-ranging chimpanzees in the Kibale forest, Uganda
    • Tappen M., and Wrangham R. Recognizing hominoid-modified bones: the taphonomy of colobus bones partially digested by free-ranging chimpanzees in the Kibale forest, Uganda. Am. J. Phys. Anthropol. 113 (2000) 217-234
    • (2000) Am. J. Phys. Anthropol. , vol.113 , pp. 217-234
    • Tappen, M.1    Wrangham, R.2
  • 47
    • 0027968068 scopus 로고
    • CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson J.D., Higgings D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgings, D.G.2    Gibson, T.J.3
  • 48
    • 48349104729 scopus 로고    scopus 로고
    • Ting, N., in press. Mitochondrial relationships and divergence dates of the African colobines: evidence of Miocene origins for the living colobus monkeys. J. Hum. Evol. doi:10.1016/j.jhevol.2008.02.011.
    • Ting, N., in press. Mitochondrial relationships and divergence dates of the African colobines: evidence of Miocene origins for the living colobus monkeys. J. Hum. Evol. doi:10.1016/j.jhevol.2008.02.011.
  • 49
    • 33750088152 scopus 로고    scopus 로고
    • Going wild: lessons from naturally occurring T-lymphotropic lentiviruses
    • van de Woude S., and Apetrei C. Going wild: lessons from naturally occurring T-lymphotropic lentiviruses. Clin. Microbiol. Rev. 19 (2006) 728-762
    • (2006) Clin. Microbiol. Rev. , vol.19 , pp. 728-762
    • van de Woude, S.1    Apetrei, C.2
  • 52
    • 0030749810 scopus 로고    scopus 로고
    • Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method
    • Yang B., and Rannala B. Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method. Mol. Biol. Evol. 14 (1997) 717-724
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 717-724
    • Yang, B.1    Rannala, B.2
  • 53
    • 14844323547 scopus 로고    scopus 로고
    • Minimal values for reliability of bootstrap and jackknife proportions, decay index, and Bayesian posterior probabilities
    • Zander R.H. Minimal values for reliability of bootstrap and jackknife proportions, decay index, and Bayesian posterior probabilities. PhyloInformatics 2 (2004) 1-13
    • (2004) PhyloInformatics , vol.2 , pp. 1-13
    • Zander, R.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.