Protein conformation changes of HemAT-Bs upon ligand binding probed by ultraviolet resonance Raman spectroscopy

Journal of Biological Chemistry

Volumn 283, Issue 11, 2008, Pages 6942-6949

  El Mashtoly, Samir F ^a,b   Gu, Yuzong ^a   Yoshimura, Hideaki ^a   Yoshioka, Shiro ^a   Aono, Shigetoshi ^a   Kitagawa, Teizo ^a,c  

^a OKAZAKI INSTITUTE FOR INTEGRATIVE BIOSCIENCE   (Japan)

^b ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^c TOYOTA PHYSICAL AND CHEMICAL RESEARCH INSTITUTE   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIOLOGY; BINDING SITES; BIOCHEMISTRY; CARBON MONOXIDE; CONFORMATIONS; HYDROGEN; HYDROGEN BONDS; LIGANDS; PORPHYRINS; REACTION KINETICS; RESONANCE; SENSORS;

BACILLUS SUBTILIS; CO AND NO; CONFORMATIONAL CHANGES; DO-MAINS; ENVIRONMENTAL CHANGES; GAS MOLECULES; LIGAND BINDINGS; PROTEIN CONFORMATIONS; PROTEIN MOIETIES; SENSOR DOMAINS; SIGNAL TRANSDUCERS; STRUCTURAL CHANGES; ULTRAVIOLET RESONANCE RAMAN SPECTROSCOPIES; ULTRAVIOLET RESONANCE RAMAN SPECTRUMS;

HEMOGLOBIN;

BACTERIAL PROTEIN; CARBON MONOXIDE; HEME; HISTIDINE; LIGAND; MUTANT PROTEIN; NITRIC OXIDE; OXYGEN; PROPIONIC ACID DERIVATIVE; PROTEIN HEMAT; THREONINE; TYROSINE; UNCLASSIFIED DRUG; HEME PROTEIN, BACTERIA; HEMOPROTEIN;

ARTICLE; BIOLOGICAL MONITORING; BIOSENSOR; HYDROGEN BOND; LIGAND BINDING; MICROENVIRONMENT; MOLECULAR MODEL; MOLECULAR PROBE; NONHUMAN; OXYGEN AFFINITY; OXYGEN SENSING; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN STRUCTURE; RAMAN SPECTROMETRY; SIGNAL TRANSDUCTION; ULTRAVIOLET RADIATION; BACILLUS SUBTILIS; BIOLOGICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; CONFORMATION; GENE EXPRESSION REGULATION; METABOLISM; METHODOLOGY; MUTATION; ULTRAVIOLET SPECTROPHOTOMETRY;

BACILLUS SUBTILIS;

BACILLUS SUBTILIS; BACTERIAL PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; HEME; HEMEPROTEINS; HYDROGEN BONDING; LIGANDS; MODELS, BIOLOGICAL; MODELS, MOLECULAR; MOLECULAR CONFORMATION; MUTATION; OXYGEN; PROTEIN CONFORMATION; SPECTROPHOTOMETRY, ULTRAVIOLET; SPECTRUM ANALYSIS, RAMAN; TYROSINE;

EID: 43749094347     PISSN: 00219258     EISSN: 1083351X     Source Type: Journal    
DOI: 10.1074/jbc.M709209200     Document Type: Article

References (44)

1. Rodgers, K. R. (1999) Curr. Opin. Chem. Biol. 3, 158-167
2. Chan, M. K. (2001) Curr. Opin. Chem. Biol. 5, 216-222
3. Aono, S., and Nakajima, H. (1999) Coord. Chem. Rev. 190-192, 267-282
4. Gilles-Gonzalez, M.-A., and Gonzalez, G. (2005) J. Inorg. Biochem. 99, 1-22
5. Uchida, T., and Kitagawa, T. (2005) Acc. Chem. Res. 38, 662-670
6. Sasakura, Y., Yoshimura-Suzuki, T., Kurokawa, H., and Shimizu, T. (2006) Acc. Chem. Res. 39, 37-43
7. Gilles-Gonzalez, M.-A., Ditta, G. S., and Helinski, D. R. (1991) Nature 350, 170-172
8. Chang, A. L., Tuckerman, J. R., Gonzalez, G., Mayer, R., Weinhouse, H., Volman, G., Amikam, D., Benziman, M., and Gilles-Gonzalez, M.-A. (2001) Biochemistry 40, 3420-3426
9. Delgado-Nixon, V. M., Gonzalez, G., and Gilles-Gonzalez, M.-A. (2000) Biochemistry 39, 2685-2691
10. Hou, S., Larsen, R. W., Boudko, D., Riley, C. W., Karatan, E., Zimmer, M., Ordal, G. W., and Alam, M. (2000) Nature 403, 540-544
11. Gong, W., Hao, B., Mansy, S. S., Gonzalez, G., Gilles-Gonzalez, M.-A., and Chan, M. K. (1998) Proc. Natl. Acad. Sci. U. S. A. 95, 15177-15182
12. Nakamura, H., Kumita, H., Imai, K., Iizuka, T., and Shiro, Y. (2004) Proc. Natl. Acad. Sci. U. S. A. 101, 2742-2746
13. Tanaka, A., Takahashi, H., and Shimizu, T. (2007) J. Biol. Chem. 282, 21301-21307
14. Hou, S., Freitas, T., Larsen, R. W., Piatibratov, M., Sivozhelezov, V., Yamamoto, A., Meleshkevitch, E. A., Zimmer, M., Ordal, G. W., and Alam, M. (2001) Proc. Natl. Acad. Sci. U. S. A. 98, 9353-9358
15. Aono, S., Kato, T., Matsuki, M., Nakajima, H., Ohta, T., Uchida, T., and Kitagawa, T., (2002) J. Biol. Chem. 277, 13528-13538
16. Zhang, W., Olson, J. S., and Phillips, G. N., Jr. (2005) Biophys. J. 88, 2801-2814
17. Ohta, T., and Kitagawa, T. (2005) Inorg. Chem. 44, 758-769
18. Szurmant, H., and Ordal, G. W. (2004) Microbiol. Mol. Biol. Rev. 68, 301-319
19. Bischoff, D. S., and Ordal, G. W. (1992) Mol. Microbiol. 6, 23-28
20. Garrity, L. F., and Ordal G, W. (1995) Pharmacol. Ther. 68, 87-104
21. Zhang, W., and Phillips, G. N., Jr. (2003) Structure (Lond.) 11, 1097-1110
22. Ohta, T., Yoshimura, H., Yoshioka, S., Aono, S., and Kitagawa, T. (2004) J. Am. Chem. Soc. 126, 15000-15001
23. Yoshimura, H., Yoshioka, S., Kobayashi, K., Ohta, T., Uchida, T., Kubo, M., Kitagawa, T., and Aono, S. (2006) Biochemistry 45, 8301-8307
24. Pinakoulaki, E., Yoshimura, H., Yoshioka, S., Aono, S., and Varotsis, C. (2006) Biochemistry 45, 7763-7766
25. Yoshimura, H., Yoshioka, S., Mizutani, Y., and Aono, S. (2007) Biochem. Biophys. Res. Commun. 357, 1053-1057
26. Harada, I., and Takeuchi, H. (1986) in Spectroscopy of Biological Systems, Advances in Spectroscopy (Clark, R. J. H., and Hester, R. E., eds.) pp. 113-175, John Wiley & Sons, Chichester, UK
27. Austin, J. C., Jordan, T., and Spiro, T. G. (1993) in Biomolecular Spectroscopy, Part A, Advances in Spectroscopy (Clark, R. J. H., and Hester, R. E., eds.) pp. 55-127, John Wiley & Sons, Chichester, UK
28. Rodgers, K. R., Su, C., Subramaniam, S., and Spiro, T. G. (1992) J. Am. Chem. Soc. 114, 3697-3709
29. Gao, Y., El-Mashtoly, S. F., Pal, B., Hayashi, T., Harada, K., and Kitagawa, T. (2006) J. Biol. Chem. 281, 24637-24646
30. Kubo, M., Inagaki, S., Yoshioka, S., Uchida, T., Mizutani, Y., Aono, S., and Kitagawa, T. (2006) J. Biol. Chem. 281, 11271-11278
31. El-Mashtoly, S. F., Takahashi, H., Shimizu, T., and Kitagawa, T. (2007) J. Am. Chem. Soc. 129, 3556-3563
32. Aki, M., Ogura, T., Shinzawa-Itoh, K., Yoshikawa, S., and Kitagawa, T. (2000) J. Phys. Chem. B 104, 10765-10774
33. Takeuchi, H. (2003) Biopolymers 72, 305-317
34. Miura, T., Takeuchi, H., and Harada, I. (1988) Biochemistry 27, 88-94
35. Miura, T., Takeuchi, H., and Harada, I. (1989) J. Raman Spectrosc. 20, 667-671
36. Matsuno, M., and Takeuchi, H. (1998) Bull. Chem. Soc. Jpn. 71, 851-857
37. Chi, Z., and Asher, S. A. (1998) J. Phys. Chem. B 102, 9595-9602
38. Teraoka, J., and Kitagawa, T. (1981) J. Biol. Chem. 256, 3969-3977
39. Takeuchi, H., Watanabe, N., Satoh, Y., and Harada, I. (1989) J. Raman Spectrosc. 20, 233-237
40. El-Mashtoly, S. F., Yamauchi, S., Kumauchi, M., Hamada, N., Tokunaga, F., and Unno, M. (2005) J. Phys. Chem. B 109, 23666-23673
41. Pinakoulaki, E., Yoshimura, H., Daskalakis, V., Yoshioka, S., Aono, A., and Varotsis, C. (2006) Proc. Natl. Acad. Sci. U. S. A. 103, 14796-14801
42. Ottemann, K. M., Xiao, W., Shin, Y.-K., and Koshland, D. E., Jr. (1999) Science 285, 1751-1754
43. Szurmant, H., Bunn, M. W., Cho, S. H., and Ordal, G. W. (2004) J. Mol. Biol. 344, 919-928
44. Kachalova, G. S., Popov, A. N., and Bartunik, H. D. (1999) Science 284, 473-476