Hatching enzyme of the ovoviviparous black rockfish Sebastes schlegelii - Environmental adaptation of the hatching enzyme and evolutionary aspects of formation of the pseudogene

FEBS Journal

Volumn 275, Issue 11, 2008, Pages 2884-2898

  Kawaguchi, Mari ^a   Nakagawa, Masahiro ^b   Noda, Tsutomu ^b   Yoshizaki, Norio ^c   Hiroi, Junya ^d   Nishida, Mutsumi ^e   Iuchi, Ichiro ^a   Yasumasu, Shigeki ^a  

^a SOPHIA UNIVERSITY   (Japan)

^b JAPAN FISHERIES RESEARCH AND EDUCATION AGENCY   (Japan)

^c GIFU UNIVERSITY   (Japan)

^d ST MARIANNA UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^e UNIVERSITY OF TOKYO   (Japan)

Author keywords

Aberrant splicing; Adaptation; Astacin family metalloprotease; Hatching enzyme; Pseudogene

Indexed keywords

COMPLEMENTARY DNA; HIGH CHORIOLYTIC ENZYME; LOW CHORIOLYTIC ENZYME; METALLOPROTEINASE;

ANIMAL EXPERIMENT; ARTICLE; CHORION; CONTROLLED STUDY; DNA SPLICING; EMBRYO; ENZYME ACTIVITY; EVOLUTIONARY ADAPTATION; FEMALE; FISH; GENE EXPRESSION; GENE IDENTIFICATION; HATCHING; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MOLECULAR CLONING; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; OVOVIVIPARITY; PRIORITY JOURNAL; PSEUDOGENE; SEBASTES SCHLEGELII; SPECIES COMPARISON; TELEOST;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CASEINS; CHORION; CLONING, MOLECULAR; EVOLUTION, MOLECULAR; FISHES; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENE EXPRESSION REGULATION, ENZYMOLOGIC; METALLOPROTEASES; MODELS, BIOLOGICAL; MOLECULAR SEQUENCE DATA; PHYLOGENY; PSEUDOGENES; RNA SPLICING; SEQUENCE HOMOLOGY, AMINO ACID;

PISCES; SEBASTES MELANOPS; SEBASTES SCHLEGELII; TELEOST FISH;

EID: 43549108168     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2008.06427.x     Document Type: Article

References (40)

1. Yamagami K (1972) Isolation of a choriolytic enzyme (hatching enzyme) of the teleost, Oryzias latipes. Dev Biol 29, 343 348.
2. Yamagami K (1973) Some enzymological properties of a hatching enzyme (chorionase) isolated from the fresh-water teleost, Oryzias latipes. Comp Biochem Physiol 46B, 603 616.
3. Yamagami K, Hamazaki TS, Yasumasu S, Masuda K Iuchi I (1992) Molecular and cellular basis of formation, hardening, and breakdown of the egg envelope in fish. Int Rev Cytol 136, 51 92.
4. Yasumasu S, Yamada K, Akasaka K, Mitsunaga K, Iuchi I, Shimada H Yamagami K (1992a) Isolation of cDNAs for LCE and HCE, two constituent proteases of the hatching enzyme of Oryzias latipes, and concurrent expression of their mRNAs during development. Dev Biol 153, 250 258.
5. Inohaya K, Yasumasu S, Araki K, Naruse K, Yamazaki K, Yasumasu I, Iuchi I Yamagami K (1997) Species-dependent migration of fish hatching gland cells that express astacin-like proteases in common. Dev Growth Differ 39, 191 197.
6. Olivotto I, Yasumasu S, Gioacchini G, Maradonna F, Cionna C Carnevali O (2004) Cloning and expression of high choriolytic enzyme, a component of the hatching enzyme system, during embryonic development of the marine ornamental fish Chrysiptera prasema. Mar Biol 145, 1235 1241.
7. Hiroi J, Maruyama K, Kawazu K, Kaneko T, Ohtani-Kaneko R Yasumasu S (2004) Structure and developmental expression of hatching enzyme genes of the Japanese eel Anguilla japonica: an aspect of the evolution of fish hatching enzyme gene. Dev Genes Evol 214, 176 184.
8. Kawaguchi M, Yasumasu S, Shimizu A, Hiroi J, Yoshizaki N, Nagata K, Tanokura M Iuchi I (2005) Purification and gene cloning of Fundulus heteroclitus hatching enzyme. A hatching enzyme system composed of high choriolytic enzyme and low choriolytic enzyme is conserved between two different teleosts, Fundulus heteroclitus and medaka Oryzias latipes. FEBS J 272, 4315 4326.
9. Kawaguchi M, Yasumasu S, Hiroi J, Naruse K, Inoue M Iuchi I (2006) Evolution of teleostean hatching enzyme genes and their paralogous genes. Dev Genes Evol 216, 769 784.
10. Kawaguchi M, Yasumasu S, Hiroi J, Naruse K, Suzuki T Iuchi I (2007) Analysis of the exon-intron structures of fish, amphibian, bird and mammalian hatching enzyme genes, with special reference to the intron loss evolution of hatching enzyme genes in Teleostei. Gene 392, 77 88.
11. Yasumasu S, Iuchi I Yamagami K (1988) Medaka hatching enzyme consists of two kinds of proteases which act cooperatively. Zool Sci 5, 191 195.
12. Yasumasu S, Iuchi I Yamagami K (1989) Purification and partial characterization of high choriolytic enzyme (HCE), a component of the hatching enzyme of the teleost, Oryzias latipes. J Biochem 105, 204 211.
13. Yasumasu S, Iuchi I Yamagami K (1989) Isolation and some properties of low choriolytic enzyme (LCE), a component of the hatching enzyme of the teleost, Oryzias latipes. J Biochem 105, 212 218.
14. Bond JS Beynon RJ (1995) The astacin family of metalloendopeptidases. Protein Sci 4, 1247 1261.
15. Nelson JS (2006) Fishes of the World, 4th edn. Wiley, New York, NY.
16. Kusakari M (1995) Studies on the reproductive biology and artificial juvenile production of kurosoi Sebastes schlegeli. Sci Rep Hokkaido Fish Exp Stn 47, 41 124.
17. Jiang W Bond JS (1992) Families of metalloendopeptidases and their relationships. FEBS Lett 312, 110 114.
18. Bode W, Gomis-Ruth FX Stockler W (1993) Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzincins'. FEBS Lett 331, 134 140.
19. Stocker W, Grams F, Baumann U, Reinemer P, Gomis-Ruth FX, McKay DB Bode W (1995) The metzincins - topological and sequential relations between the astacins, adamalysins, serralysins, and matrixins (collagenases) define a superfamily of zinc-peptidases. Protein Sci 4, 823 840.
20. Shapiro MB Senapathy P (1987) RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression. Nucleic Acids Res 15, 7155 7174.
21. Baralle D Baralle M (2005) Splicing in action: assessing disease causing sequence changes. J Med Genet 42, 737 748.
22. Inohaya K, Yasumasu S, Ishimaru M, Ohyama A, Iuchi I Yamagami K (1995) Temporal and spatial patterns of gene expression for the hatching enzyme in the teleost embryo, Oryzias latipes. Dev Biol 171, 374 385.
23. Yamamoto M Yamagami K (1975) Electron microscopic studies on choriolysis by the hatching enzyme of the teleost, Oryzias latipes. Dev Biol 43, 313 321.
24. Smith WL Wheeler WC (2004) Polyphyly of the mail-cheeked fishes (Teleostei: Scorpaeniformes): evidence from mitochondrial and nuclear sequence data. Mol Phylogenet Evol 32, 627 646.
25. Barsukov VV (1989) The upper Miocene rockfishes (Scorpaenidae, Sebastinae) from California. Proc Zool Inst Len 201, 73 109.
26. Hyde JR Vetter RD (2007) The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier). Mol Phylogenet Evol 44, 790 811.
27. Staley JP Guthrie C (1998) Mechanical devices of the spliceosome: motors, clocks, springs, and things. Cell 92, 315 326.
28. Reed R (2000) Mechanisms of fidelity in pre-mRNA splicing. Curr Opin Cell Biol 12, 340 345.
29. Hastings ML Krainer AR (2001) Pre-mRNA splicing in the new millennium. Curr Opin Cell Biol 13, 302 309.
30. Nakai K Sakamoto H (1994) Construction of a novel database containing aberrant splicing mutations of mammalian genes. Gene 141, 171 177.
31. Pai HV, Kommaddi RP, Chinta SJ, Mori T, Boyd MR Ravindranath V (2004) A frameshift mutation and alternate splicing in human brain generate a functional form of the pseudogene cytochrome P4502D7 that demethylates codeine to morphine. J Biol Chem 279, 27383 27389.
32. Moore MJ (2002) RNA events. No end to nonsense. Science 298, 370 371.
33. Black DL (2003) Mechanisms of alternative pre-messenger RNA splicing. Annu Rev Biochem 72, 291 336.
34. Modrek B Lee C (2002) A genomic view of alternative splicing. Nat Genet 30, 13 19.
35. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F Higgins DG (1997) The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876 4882.
36. Guindon S Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52, 696 704.
37. Huelsenbeck JP Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17, 754 755.
38. Ronquist F Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572 1574.
39. Hasegawa M, Kishino H Yano T (1985) Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. J Mol Evol 22, 160 174.
40. Swofford DL (2003) PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, MA.