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Volumn 9, Issue 2, 2008, Pages

Ancora: A web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; CONTROLLED STUDY; DEVELOPMENT; DROSOPHILA; GENE LOCATION; GENETIC DATABASE; GENOME ANALYSIS; HUMAN; INTERNET; METAZOON; NONHUMAN; REGULATOR GENE; SEQUENCE ALIGNMENT; SPECIES COMPARISON; UNTRANSLATED REGION; WEB BROWSER; ZEBRA FISH; ANIMAL; DEVELOPMENTAL GENE; DNA SEQUENCE; GENE EXPRESSION REGULATION; GENETICS; GENOME; METHODOLOGY;

EID: 43549106605     PISSN: 14747596     EISSN: 1474760X     Source Type: Journal    
DOI: 10.1186/gb-2008-9-2-r34     Document Type: Article
Times cited : (72)

References (47)
  • 2
    • 22144473057 scopus 로고    scopus 로고
    • Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes
    • 544600 15613238 10.1186/1471-2164-5-99
    • Sandelin A Bailey P Bruce S Engström PG Klos JM Wasserman WW Ericson J Lenhard B Arrays of ultraconserved non-coding regions span the loci of key developmental genes in vertebrate genomes. BMC Genomics 2004, 5:99 544600 15613238 10.1186/1471-2164-5-99
    • (2004) BMC Genomics , vol.5 , pp. 99
    • Sandelin, A.1    Bailey, P.2    Bruce, S.3    Engström, P.G.4    Klos, J.M.5    Wasserman, W.W.6    Ericson, J.7    Lenhard, B.8
  • 5
    • 22344454794 scopus 로고    scopus 로고
    • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing
    • 1142470 15899965 10.1101/gr.3545105
    • Glazov EA Pheasant M McGraw EA Bejerano G Mattick JS Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing. Genome Res 2005, 15:800-808 1142470 15899965 10.1101/gr.3545105
    • (2005) Genome Res , vol.15 , pp. 800-808
    • Glazov, E.A.1    Pheasant, M.2    McGraw, E.A.3    Bejerano, G.4    Mattick, J.S.5
  • 6
    • 38849112675 scopus 로고    scopus 로고
    • Genomic regulatory blocks underlie extensive microsynteny conservation in insects
    • 2099597 17989259 10.1101/gr.6669607
    • Engström PG Ho Sui SJ Drivenes Ø Becker TS Lenhard B Genomic regulatory blocks underlie extensive microsynteny conservation in insects. Genome Res 2007, 17:1898-1908 2099597 17989259 10.1101/ gr.6669607
    • (2007) Genome Res , vol.17 , pp. 1898-1908
    • Engström, P.G.1    Ho Sui, S.J.2    Drivenes, Ø.3    Becker, T.S.4    Lenhard, B.5
  • 7
    • 34447500684 scopus 로고    scopus 로고
    • Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans
    • 1852409 17274809 10.1186/gb-2007-8-2-r15
    • Vavouri T Walter K Gilks WR Lehner B Elgar G Parallel evolution of conserved non-coding elements that target a common set of developmental regulatory genes from worms to humans. Genome Biol 2007, 8:R15 1852409 17274809 10.1186/gb-2007-8-2-r15
    • (2007) Genome Biol , vol.8
    • Vavouri, T.1    Walter, K.2    Gilks, W.R.3    Lehner, B.4    Elgar, G.5
  • 8
    • 0142084743 scopus 로고    scopus 로고
    • Scanning human gene deserts for long-range enhancers
    • 10.1126/science.1088328 14563999
    • Nobrega MA Ovcharenko I Afzal V Rubin EM Scanning human gene deserts for long-range enhancers. Science 2003, 302:413 10.1126/science.1088328 14563999
    • (2003) Science , vol.302 , pp. 413
    • Nobrega, M.A.1    Ovcharenko, I.2    Afzal, V.3    Rubin, E.M.4
  • 9
    • 9144268889 scopus 로고    scopus 로고
    • Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification
    • 10.1242/dev.00877 14645121
    • Kimura-Yoshida C Kitajima K Oda-Ishii I Tian E Suzuki M Yamamoto M Suzuki T Kobayashi M Aizawa S Matsuo I Characterization of the pufferfish Otx2 cis-regulators reveals evolutionarily conserved genetic mechanisms for vertebrate head specification. Development 2004, 131:57-71 10.1242/dev.00877 14645121
    • (2004) Development , vol.131 , pp. 57-71
    • Kimura-Yoshida, C.1    Kitajima, K.2    Oda-Ishii, I.3    Tian, E.4    Suzuki, M.5    Yamamoto, M.6    Suzuki, T.7    Kobayashi, M.8    Aizawa, S.9    Matsuo, I.10
  • 12
    • 27144526227 scopus 로고    scopus 로고
    • Human-zebrafish non-coding conserved elements act in vivo to regulate transcription
    • 1236720 16179648 10.1093/nar/gki853
    • Shin JT Priest JR Ovcharenko I Ronco A Moore RK Burns CG MacRae CA Human-zebrafish non-coding conserved elements act in vivo to regulate transcription. Nucleic Acids Res 2005, 33:5437-5445 1236720 16179648 10.1093/nar/gki853
    • (2005) Nucleic Acids Res , vol.33 , pp. 5437-5445
    • Shin, J.T.1    Priest, J.R.2    Ovcharenko, I.3    Ronco, A.4    Moore, R.K.5    Burns, C.G.6    MacRae, C.A.7
  • 13
    • 33846112470 scopus 로고    scopus 로고
    • VISTA Enhancer Browser - A database of tissue-specific human enhancers
    • 1716724 17130149 10.1093/nar/gkl822
    • Visel A Minovitsky S Dubchak I Pennacchio LA VISTA Enhancer Browser - a database of tissue-specific human enhancers. Nucleic Acids Res 2007, 35:D88-92 1716724 17130149 10.1093/nar/gkl822
    • (2007) Nucleic Acids Res , vol.35
    • Visel, A.1    Minovitsky, S.2    Dubchak, I.3    Pennacchio, L.A.4
  • 14
    • 35248843126 scopus 로고    scopus 로고
    • CONDOR: A database resource of developmentally associated conserved non-coding elements
    • 2020477 17760977 10.1186/1471-213X-7-100
    • Woolfe A Goode DK Cooke J Callaway H Smith S Snell P McEwen GK Elgar G CONDOR: A database resource of developmentally associated conserved non-coding elements. BMC Dev Biol 2007, 7:100 2020477 17760977 10.1186/ 1471-213X-7-100
    • (2007) BMC Dev Biol , vol.7 , pp. 100
    • Woolfe, A.1    Goode, D.K.2    Cooke, J.3    Callaway, H.4    Smith, S.5    Snell, P.6    McEwen, G.K.7    Elgar, G.8
  • 15
    • 27544443178 scopus 로고    scopus 로고
    • Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny
    • 10.1093/hmg/ddi338 16155111
    • Ahituv N Prabhakar S Poulin F Rubin EM Couronne O Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny. Hum Mol Genet 2005, 14:3057-3063 10.1093/hmg/ddi338 16155111
    • (2005) Hum Mol Genet , vol.14 , pp. 3057-3063
    • Ahituv, N.1    Prabhakar, S.2    Poulin, F.3    Rubin, E.M.4    Couronne, O.5
  • 16
    • 11144339384 scopus 로고    scopus 로고
    • Long-range control of gene expression: Emerging mechanisms and disruption in disease
    • 1196435 15549674 10.1086/426833
    • Kleinjan DA van Heyningen V Long-range control of gene expression: emerging mechanisms and disruption in disease. Am J Hum Genet 2005, 76:8-32 1196435 15549674 10.1086/426833
    • (2005) Am J Hum Genet , vol.76 , pp. 8-32
    • Kleinjan, D.A.1    van Heyningen, V.2
  • 17
    • 35248882434 scopus 로고    scopus 로고
    • The random versus fragile breakage models of chromosome evolution: A matter of resolution
    • 10.1007/s00438-007-0287-0 17851692
    • Becker TS Lenhard B The random versus fragile breakage models of chromosome evolution: A matter of resolution. Mol Genet Genomics 2007, 278:487-491 10.1007/s00438-007-0287-0 17851692
    • (2007) Mol Genet Genomics , vol.278 , pp. 487-491
    • Becker, T.S.1    Lenhard, B.2
  • 20
    • 46749116610 scopus 로고    scopus 로고
    • Ancora http://ancora.genereg.net
    • Ancora
  • 24
    • 0141815478 scopus 로고    scopus 로고
    • Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
    • 208784 14500911 10.1073/pnas.1932072100
    • Kent WJ Baertsch R Hinrichs A Miller W Haussler D Evolution's cauldron: duplication, deletion, and rearrangement in the mouse and human genomes. Proc Natl Acad Sci USA 2003, 100:11484-11489 208784 14500911 10.1073/ pnas.1932072100
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 11484-11489
    • Kent, W.J.1    Baertsch, R.2    Hinrichs, A.3    Miller, W.4    Haussler, D.5
  • 26
    • 33846042972 scopus 로고    scopus 로고
    • The mouse genome database (MGD): New features facilitating a model system
    • 1751527 17135206 10.1093/nar/gkl940
    • Eppig JT Blake JA Bult CJ Kadin JA Richardson JE The mouse genome database (MGD): New features facilitating a model system. Nucleic Acids Res 2007, 35:D630-637 1751527 17135206 10.1093/nar/gkl940
    • (2007) Nucleic Acids Res , vol.35
    • Eppig, J.T.1    Blake, J.A.2    Bult, C.J.3    Kadin, J.A.4    Richardson, J.E.5
  • 30
    • 34547576613 scopus 로고    scopus 로고
    • Multiple whole genome alignments and novel biomedical applications at the VISTA portal
    • 1933192 17488840 10.1093/nar/gkm279
    • Brudno M Poliakov A Minovitsky S Ratnere I Dubchak I Multiple whole genome alignments and novel biomedical applications at the VISTA portal. Nucleic Acids Res 2007, 35:W669-674 1933192 17488840 10.1093/nar/gkm279
    • (2007) Nucleic Acids Res , vol.35
    • Brudno, M.1    Poliakov, A.2    Minovitsky, S.3    Ratnere, I.4    Dubchak, I.5
  • 34
    • 3242878193 scopus 로고    scopus 로고
    • ECR Browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes
    • 441493 15215395 10.1093/nar/gkh355
    • Ovcharenko I Nobrega MA Loots GG Stubbs L ECR Browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Res 2004, 32:W280-286 441493 15215395 10.1093/nar/ gkh355
    • (2004) Nucleic Acids Res , vol.32
    • Ovcharenko, I.1    Nobrega, M.A.2    Loots, G.G.3    Stubbs, L.4
  • 35
    • 33646124020 scopus 로고    scopus 로고
    • Molecular cloning and characterization of human Castor, a novel human gene upregulated during cell differentiation
    • 10.1016/j.bbrc.2006.03.207 16631614
    • Liu Z Yang X Tan F Cullion K Thiele CJ Molecular cloning and characterization of human Castor, a novel human gene upregulated during cell differentiation. Biochem Biophys Res Commun 2006, 344:834-844 10.1016/j.bbrc.2006.03.207 16631614
    • (2006) Biochem Biophys Res Commun , vol.344 , pp. 834-844
    • Liu, Z.1    Yang, X.2    Tan, F.3    Cullion, K.4    Thiele, C.J.5
  • 36
    • 34147149312 scopus 로고    scopus 로고
    • A developmental view of microRNA function
    • 10.1016/j.tibs.2007.02.006 17350266
    • Zhao Y Srivastava D A developmental view of microRNA function. Trends Biochem Sci 2007, 32:189-197 10.1016/j.tibs.2007.02.006 17350266
    • (2007) Trends Biochem Sci , vol.32 , pp. 189-197
    • Zhao, Y.1    Srivastava, D.2
  • 37
    • 34447287334 scopus 로고    scopus 로고
    • Skeletal muscle progenitor cells and the role of Pax genes
    • 10.1016/j.crvi.2007.03.015 17631448
    • Buckingham M Skeletal muscle progenitor cells and the role of Pax genes. C R Biol 2007, 330:530-533 10.1016/j.crvi.2007.03.015 17631448
    • (2007) C R Biol , vol.330 , pp. 530-533
    • Buckingham, M.1
  • 38
    • 21044452617 scopus 로고    scopus 로고
    • LIM-homeodomain genes in mammalian development and human disease
    • 10.1007/s11033-004-7657-z 16022279
    • Hunter CS Rhodes SJ LIM-homeodomain genes in mammalian development and human disease. Mol Biol Rep 2005, 32:67-77 10.1007/s11033-004-7657-z 16022279
    • (2005) Mol Biol Rep , vol.32 , pp. 67-77
    • Hunter, C.S.1    Rhodes, S.J.2
  • 41
    • 10644283823 scopus 로고    scopus 로고
    • Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • International Chicken Genome 10.1038/nature03154 15592404
    • International Chicken Genome Sequencing Consortium Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature 2004, 432:695-716 10.1038/nature03154 15592404
    • (2004) Nature , vol.432 , pp. 695-716
  • 47
    • 33645211529 scopus 로고    scopus 로고
    • A mouse model for human short-stature syndromes identifies Shox2 as an upstream regulator of Runx2 during long-bone development
    • 1450202 16537395 10.1073/pnas.0510544103
    • Cobb J Dierich A Huss-Garcia Y Duboule D A mouse model for human short-stature syndromes identifies Shox2 as an upstream regulator of Runx2 during long-bone development. Proc Natl Acad Sci USA 2006, 103:4511-4515 1450202 16537395 10.1073/pnas.0510544103
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 4511-4515
    • Cobb, J.1    Dierich, A.2    Huss-Garcia, Y.3    Duboule, D.4


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