-
1
-
-
43449121216
-
-
Adachi, J. & M. Hasegawa. 1996. MOLPHY: Programs for Molecular Phylogenetics ver. 2.3, Computer Science Monographs, No. 28. Institute of Statistical Mathematics, Tokyo
-
Adachi, J. & M. Hasegawa. 1996. MOLPHY: Programs for Molecular Phylogenetics ver. 2.3, Computer Science Monographs, No. 28. Institute of Statistical Mathematics, Tokyo.
-
-
-
-
2
-
-
0016355478
-
A new look at the statistical model identification
-
Akaike, H. 1974. A new look at the statistical model identification. IEEE Transactions on Automatic Control 19: 716-723.
-
(1974)
IEEE Transactions on Automatic Control
, vol.19
, pp. 716-723
-
-
Akaike, H.1
-
3
-
-
43449129431
-
-
Asami, S. 1970. Topography and geology in the Bonin Islands. Pages 91-108. In T. Tsuyama & S. Asami (eds.), The Nature of the Bonin and Volcano Islands. Ministry of Education and Agency for Cultural Affairs, Tokyo. [In Japanese.]
-
Asami, S. 1970. Topography and geology in the Bonin Islands. Pages 91-108. In T. Tsuyama & S. Asami (eds.), The Nature of the Bonin and Volcano Islands. Ministry of Education and Agency for Cultural Affairs, Tokyo. [In Japanese.]
-
-
-
-
4
-
-
0002876798
-
Manual of Hawaiian mosses
-
Bartram, E. B. 1933. Manual of Hawaiian mosses. Bishop Museum Bulletin 101: 1-275.
-
(1933)
Bishop Museum Bulletin
, vol.101
, pp. 1-275
-
-
Bartram, E.B.1
-
5
-
-
0002344794
-
Bootstrap methods: Another look at the jackknife
-
Efron, B. 1979. Bootstrap methods: another look at the jackknife. Annals of Statistics 7: 1-26.
-
(1979)
Annals of Statistics
, vol.7
, pp. 1-26
-
-
Efron, B.1
-
6
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
Felsenstein, J. 1981. Evolutionary trees from DNA sequences: a maximum likelihood approach. Journal of Molecular Evolution 17: 368-376.
-
(1981)
Journal of Molecular Evolution
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
7
-
-
84959747425
-
Toward defining the course of evolution: Minimum change for a specific tree topology
-
Fitch, W. M. 1971. Toward defining the course of evolution: Minimum change for a specific tree topology. Systematic Zoology 20: 406-416.
-
(1971)
Systematic Zoology
, vol.20
, pp. 406-416
-
-
Fitch, W.M.1
-
8
-
-
84886287294
-
The bryophytes of the Ogasawara Islands
-
Ono, et al
-
Furuki, T., M. Higuchi & T. Matsui. 1991. The bryophytes of the Ogasawara Islands. Pages 13-23. In M. Ono, et al.
-
(1991)
In M
, pp. 13-23
-
-
Furuki, T.1
Higuchi, M.2
Matsui, T.3
-
9
-
-
43449101456
-
-
(eds.), Report of the Second General Survey on Natural Environment of the Ogasawara (Bonin) Islands. Tokyo Metropolitan Univ., Tokyo. [In Japanese.]
-
(eds.), Report of the Second General Survey on Natural Environment of the Ogasawara (Bonin) Islands. Tokyo Metropolitan Univ., Tokyo. [In Japanese.]
-
-
-
-
10
-
-
0028122621
-
The use of chloroplast DNA to resolve plant phylogenies: Noncoding versus rbcL sequences
-
Gielly, L. & P. Taberlet. 1994. The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Molecular Biological Evolution 11: 769-777.
-
(1994)
Molecular Biological Evolution
, vol.11
, pp. 769-777
-
-
Gielly, L.1
Taberlet, P.2
-
11
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
Guindon, S. & O. Gascuel. 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52: 696-704.
-
(2003)
Systematic Biology
, vol.52
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
12
-
-
0141501430
-
A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan
-
Handa, S., M. Nakahara, H. Tsubota, H. Deguchi & T. Nakano. 2003. A new aerial alga, Stichococcus ampulliformis sp. nov. (Trebouxiophyceae, Chlorophyta) from Japan. Phycological Research 51: 203-210.
-
(2003)
Phycological Research
, vol.51
, pp. 203-210
-
-
Handa, S.1
Nakahara, M.2
Tsubota, H.3
Deguchi, H.4
Nakano, T.5
-
13
-
-
0022376704
-
Dating of the human-ape splitting by a molecular clock of mitochondrial DNA
-
Hasegawa, M., H. Kishino & K. Yano. 1985. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22: 160-174.
-
(1985)
Journal of Molecular Evolution
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, H.2
Yano, K.3
-
15
-
-
0040205431
-
Bryophytes of the Bonin Islands and the Volcano Islands, 2
-
Inoue, H. 1970a. Bryophytes of the Bonin Islands and the Volcano Islands, 2. Journal of the Hattori Botanical Laboratory 33: 382-389.
-
(1970)
Journal of the Hattori Botanical Laboratory
, vol.33
, pp. 382-389
-
-
Inoue, H.1
-
16
-
-
43449094957
-
-
_. 1970b. Cryptogams of Chichijima and Hahajima, the Bonin Islands. Pages 125-136. In T. Tsuyama & S. Asami (eds.), The Nature of the Bonin and Volcano Islands. Ministry of Education and Agency for Cultural Affairs, Tokyo. [In Japanese.]
-
_. 1970b. Cryptogams of Chichijima and Hahajima, the Bonin Islands. Pages 125-136. In T. Tsuyama & S. Asami (eds.), The Nature of the Bonin and Volcano Islands. Ministry of Education and Agency for Cultural Affairs, Tokyo. [In Japanese.]
-
-
-
-
20
-
-
0011301668
-
Origin and evolution of endemic plants of the Bonin (Ogasawara) Islands
-
Ito, M. 1998. Origin and evolution of endemic plants of the Bonin (Ogasawara) Islands. Researches on Population Ecology 40: 205-212.
-
(1998)
Researches on Population Ecology
, vol.40
, pp. 205-212
-
-
Ito, M.1
-
21
-
-
0039613708
-
Bryophytes of the Bonin Islands and the Volcano Islands (5)
-
Iwatsuki, Z. 1985. Bryophytes of the Bonin Islands and the Volcano Islands (5). Bulletin of the National Science Museum Tokyo 11: 57-68.
-
(1985)
Bulletin of the National Science Museum Tokyo
, vol.11
, pp. 57-68
-
-
Iwatsuki, Z.1
-
23
-
-
0348090025
-
Spore output of moss capsules in relation to ontogeny of archesporial tissue
-
Kreulen, D. J. W. 1972. Spore output of moss capsules in relation to ontogeny of archesporial tissue. Journal of Bryology 7: 61-74.
-
(1972)
Journal of Bryology
, vol.7
, pp. 61-74
-
-
Kreulen, D.J.W.1
-
24
-
-
3242810318
-
MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment
-
Kumar, S., K. Tamura & M. Nei. 2004. MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5: 150-163.
-
(2004)
Briefings in Bioinformatics
, vol.5
, pp. 150-163
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
25
-
-
0037297519
-
Phylogeographic structure and cryptic speciation in the trans-Antarctic moss Pyrrhobryum mnioides
-
McDaniel, S. F. & A. J. Shaw. 2003. Phylogeographic structure and cryptic speciation in the trans-Antarctic moss Pyrrhobryum mnioides. Evolution 57: 205-215.
-
(2003)
Evolution
, vol.57
, pp. 205-215
-
-
McDaniel, S.F.1
Shaw, A.J.2
-
26
-
-
0019321718
-
Rapid isolation of high-molecular-weight plant DNA
-
Murray, M. G. & W. F. Thompson. 1980. Rapid isolation of high-molecular-weight plant DNA. Nucleic Acids Research 8: 4321-4325.
-
(1980)
Nucleic Acids Research
, vol.8
, pp. 4321-4325
-
-
Murray, M.G.1
Thompson, W.F.2
-
27
-
-
0033504552
-
The parsimony ratchet, a new method for rapid parsimony analysis
-
Nixon, K. C. 1999. The parsimony ratchet, a new method for rapid parsimony analysis. Cladistics 15: 407-414.
-
(1999)
Cladistics
, vol.15
, pp. 407-414
-
-
Nixon, K.C.1
-
28
-
-
22944456598
-
-
Program distributed by the author, Evolutionary Biology Centre, Uppsala University
-
Nylander, J. A. A. 2004. MrModeltest v2. Program distributed by the author., Evolutionary Biology Centre, Uppsala University.
-
(2004)
MrModeltest v2
-
-
Nylander, J.A.A.1
-
29
-
-
0000149673
-
Genetic differentiation without concordant morphological divergence in the thallose liverwort Conocephalum conicum
-
Odrzykoski, I. J. & J. Szweykowski. 1991. Genetic differentiation without concordant morphological divergence in the thallose liverwort Conocephalum conicum. Plant Systematics and Evolution 178: 135-151.
-
(1991)
Plant Systematics and Evolution
, vol.178
, pp. 135-151
-
-
Odrzykoski, I.J.1
Szweykowski, J.2
-
30
-
-
17144428902
-
A preliminary phylogenetic study of the genus Leucobryum (Leucobryaceae, Musci) in Asia and the Pacific based on ITS and rbcL sequences
-
Oguri, E., T. Yamaguchi, H. Tsubota & H. Deguchi. 2003. A preliminary phylogenetic study of the genus Leucobryum (Leucobryaceae, Musci) in Asia and the Pacific based on ITS and rbcL sequences. Hikobia 14: 45-53.
-
(2003)
Hikobia
, vol.14
, pp. 45-53
-
-
Oguri, E.1
Yamaguchi, T.2
Tsubota, H.3
Deguchi, H.4
-
31
-
-
43449099717
-
Morphological and molecular analyses to solve a taxonomical controversy of Leucobryum juniperoideum (Brid.) Müll. Hal. and L. humillimum Cardot (Leucobryaceae, Musci) in Japan
-
_, M. Shimamura & H. Deguchi. 2006. Morphological and molecular analyses to solve a taxonomical controversy of Leucobryum juniperoideum (Brid.) Müll. Hal. and L. humillimum Cardot (Leucobryaceae, Musci) in Japan. Hikobia 14: 387-398.
-
(2006)
Hikobia
, vol.14
, pp. 387-398
-
-
Oguri, E.1
Yamaguchi, T.2
Tsubota, H.3
Deguchi, H.4
Shimamura, M.5
Deguchi, H.6
-
33
-
-
33751101591
-
Phylogeography of an Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes
-
Ozeki, M., Y. Isagi, H. Tsubota, P. Jacklyn & D. M. J. S. Bowman. 2007. Phylogeography of an Australian termite, Amitermes laurensis (Isoptera, Termitidae), with special reference to the variety of mound shapes. Molecular Phylogenetics and Evolution 42: 236-247.
-
(2007)
Molecular Phylogenetics and Evolution
, vol.42
, pp. 236-247
-
-
Ozeki, M.1
Isagi, Y.2
Tsubota, H.3
Jacklyn, P.4
Bowman, D.M.J.S.5
-
34
-
-
0041386108
-
MrBayes 3: Bayesian phylogenetic inference under mixed models
-
Ronquist, F. & J. P. Huelsenbeck. 2003. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19: 1572-1574.
-
(2003)
Bioinformatics
, vol.19
, pp. 1572-1574
-
-
Ronquist, F.1
Huelsenbeck, J.P.2
-
35
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic tree
-
Saitou, N. & M. Nei. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic tree. Molecular Biology and Evolution 4: 406-425.
-
(1987)
Molecular Biology and Evolution
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
37
-
-
0034057960
-
Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferiana (Bryaceae)
-
Shaw, A. J. 2000. Molecular phylogeography and cryptic speciation in the mosses, Mielichhoferia elongata and M. mielichhoferiana (Bryaceae). Molecular Ecology 9: 595-608.
-
(2000)
Molecular Ecology
, vol.9
, pp. 595-608
-
-
Shaw, A.J.1
-
38
-
-
0034973203
-
Biogeographic patterns and cryptic speciation in bryophytes
-
_. 2001. Biogeographic patterns and cryptic speciation in bryophytes. Journal of Biogeography 28: 253-261.
-
(2001)
Journal of Biogeography
, vol.28
, pp. 253-261
-
-
Shaw, A.J.1
-
39
-
-
0025957041
-
Forest structures, composition, and distribution on a Pacific island, with reference to ecological release and speciation
-
Shimizu, Y. 1991. Forest structures, composition, and distribution on a Pacific island, with reference to ecological release and speciation. Pacific Science 45: 28-49.
-
(1991)
Pacific Science
, vol.45
, pp. 28-49
-
-
Shimizu, Y.1
-
40
-
-
0036623258
-
An approximately unbiased test of phylogenetic tree selection
-
Shimodaira, H. 2002. An approximately unbiased test of phylogenetic tree selection. Systematic Biology 51: 492-508.
-
(2002)
Systematic Biology
, vol.51
, pp. 492-508
-
-
Shimodaira, H.1
-
41
-
-
0036139287
-
CONSEL: For assessing the confidence of phylogenetic tree selection
-
_ & M. Hasegawa. 2001. CONSEL: for assessing the confidence of phylogenetic tree selection. Bioinformatics 17: 1246-1247.
-
(2001)
Bioinformatics
, vol.17
, pp. 1246-1247
-
-
Shimodaira, H.1
Hasegawa, M.2
-
42
-
-
43449092519
-
-
Sikes, D. S. & P. O. Lewis. 2001. PAUPRat: PAUP* implementation of the parsimony ratchet, beta software, version 1, Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs
-
Sikes, D. S. & P. O. Lewis. 2001. PAUPRat: PAUP* implementation of the parsimony ratchet, beta software, version 1., Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs.
-
-
-
-
43
-
-
3242697768
-
Phylogenetic analysis of Asian Symplocos (Symplocaceae) based on nuclear and chloroplast DNA sequences
-
Soejima, A. & H. Nagamasu. 2004. Phylogenetic analysis of Asian Symplocos (Symplocaceae) based on nuclear and chloroplast DNA sequences. Journal of Plant Research 117: 199-207.
-
(2004)
Journal of Plant Research
, vol.117
, pp. 199-207
-
-
Soejima, A.1
Nagamasu, H.2
-
44
-
-
0002080561
-
Choosing an approach and an appropriate gene for phylogenetic analysis
-
D. E. Soltis, P. S. Soltis & J. J. Doyle eds, Kluwer Academic Publishers, Boston, MA
-
Soltis, D. E. & P. S. Soltis. 1998. Choosing an approach and an appropriate gene for phylogenetic analysis. Pages 1-42. In D. E. Soltis, P. S. Soltis & J. J. Doyle (eds.), Molecular Systematics of Plants II: DNA Sequencing. Kluwer Academic Publishers, Boston, MA.
-
(1998)
Molecular Systematics of Plants II: DNA Sequencing
, pp. 1-42
-
-
Soltis, D.E.1
Soltis, P.S.2
-
46
-
-
0346355728
-
Characters of some new mosses collected by C. Wright in the North Pacific Exploring Expedition, under the command of Captain John Rogers
-
Sullivant, W. S. & L. Lesquereux. 1859. Characters of some new mosses collected by C. Wright in the North Pacific Exploring Expedition, under the command of Captain John Rogers. Proceedings of American Academy of Arts and Science 4: 276-282.
-
(1859)
Proceedings of American Academy of Arts and Science
, vol.4
, pp. 276-282
-
-
Sullivant, W.S.1
Lesquereux, L.2
-
47
-
-
43449118661
-
-
Swofford, D. L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony *and Other Methods, Version 4. Sinauer Associates, Sunderland, Massachusetts
-
Swofford, D. L. 2002. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
-
-
-
-
48
-
-
16344370934
-
Origin and diversification of Hibiscus glaber, species endemic to the oceanic Bonin Islands, revealed by chloroplast DNA polymorphism
-
Takayama, K., T. Ohi-toma, H. Kudoh & H. Kato. 2005. Origin and diversification of Hibiscus glaber, species endemic to the oceanic Bonin Islands, revealed by chloroplast DNA polymorphism. Molecular Ecology 14: 1059-1071.
-
(2005)
Molecular Ecology
, vol.14
, pp. 1059-1071
-
-
Takayama, K.1
Ohi-toma, T.2
Kudoh, H.3
Kato, H.4
-
49
-
-
0027157960
-
Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees
-
Tamura, K. & M. Nei. 1993. Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Molecular Biology and Evolution 10: 512-526.
-
(1993)
Molecular Biology and Evolution
, vol.10
, pp. 512-526
-
-
Tamura, K.1
Nei, M.2
-
50
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive sequence alignment through sequence weighting position, specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins & T. J. Gibson. 1994. CLUSTAL W: improving the sensitivity of progressive sequence alignment through sequence weighting position, specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
-
(1994)
Nucleic Acids Research
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
51
-
-
33751093677
-
Molecular phylogenetic and ordinal relationships based on analyses of a large-scale data set of 600 rbcL sequences of mosses
-
Tsubota, H., E. De Luna, D. Gonzalez, M. S. Ignatov & H. Deguchi. 2004. Molecular phylogenetic and ordinal relationships based on analyses of a large-scale data set of 600 rbcL sequences of mosses. Hikobia 14: 149-169.
-
(2004)
Hikobia
, vol.14
, pp. 149-169
-
-
Tsubota, H.1
De Luna, E.2
Gonzalez, D.3
Ignatov, M.S.4
Deguchi, H.5
-
52
-
-
33748209455
-
A protocol for DNA isolation using small quantities of material from very small hepatic plants
-
In Japanese with summarized protocol in English
-
_, H. Matsuda, H. Mohamed & H. Deguchi. 2002. A protocol for DNA isolation using small quantities of material from very small hepatic plants. Bryological Research 8: 118-122. [In Japanese with summarized protocol in English.]
-
(2002)
Bryological Research
, vol.8
, pp. 118-122
-
-
Tsubota, H.1
De Luna, E.2
Gonzalez, D.3
Ignatov, M.S.4
Deguchi, H.5
Matsuda, H.6
Mohamed, H.7
Deguchi, H.8
-
53
-
-
43449107045
-
-
Bryological Research
-
_, N. Nakao, T. Arikawa, T. Yamaguchi, M. Higuchi, H. Deguchi & T. Seki. 1999. A preliminary phylogeny of Hypnales (Musci) as inferred from chloroplast rbcL sequence data. Bryological Research 7: 233-248.
-
(1999)
A preliminary phylogeny of Hypnales (Musci) as inferred from chloroplast rbcL sequence data
, vol.7
, pp. 233-248
-
-
Tsubota, H.1
De Luna, E.2
Gonzalez, D.3
Ignatov, M.S.4
Deguchi, H.5
Matsuda, H.6
Mohamed, H.7
Deguchi, H.8
Nakao, N.9
Arikawa, T.10
Yamaguchi, T.11
Higuchi, M.12
Deguchi, H.13
Seki, T.14
-
54
-
-
0034636090
-
Riding the ice age El Niño? Pacific biogeography and evolution of Metrosideros subg. Metrosideros (Myrtaceae) inferred from nuclear ribosomal DNA
-
Wright, S. D., C. G. Yong, J. W. Dawson, D. J. Whittaler & R. C. Gardner. 2000. Riding the ice age El Niño? Pacific biogeography and evolution of Metrosideros subg. Metrosideros (Myrtaceae) inferred from nuclear ribosomal DNA. Proceedings of the National Academy of Sciences, U.S.A. 97: 4118-4123.
-
(2000)
Proceedings of the National Academy of Sciences, U.S.A
, vol.97
, pp. 4118-4123
-
-
Wright, S.D.1
Yong, C.G.2
Dawson, J.W.3
Whittaler, D.J.4
Gardner, R.C.5
-
55
-
-
0001571338
-
High levels of genetic variability in the haploid moss Plagiomnium ciliare
-
Wyatt, R., I. J. Odrzykoski & A. Stoneburner. 1989. High levels of genetic variability in the haploid moss Plagiomnium ciliare. Evolution 43: 1085-1096.
-
(1989)
Evolution
, vol.43
, pp. 1085-1096
-
-
Wyatt, R.1
Odrzykoski, I.J.2
Stoneburner, A.3
-
57
-
-
0030683599
-
PAML: A program package for phylogenetic and analysis by maximum likelihood
-
Yang, Z. 1997. PAML: a program package for phylogenetic and analysis by maximum likelihood. CABIOS 13: 555-556.
-
(1997)
CABIOS
, vol.13
, pp. 555-556
-
-
Yang, Z.1
-
58
-
-
0001016696
-
Experimental studies on trans-oceanic long-range dispersal of moss spores in the Southern Hemisphere
-
Zanten, B. O. van. 1978. Experimental studies on trans-oceanic long-range dispersal of moss spores in the Southern Hemisphere. Journal of the Hattori Botanical Laboratory 44: 455-482.
-
(1978)
Journal of the Hattori Botanical Laboratory
, vol.44
, pp. 455-482
-
-
Zanten1
van, B.O.2
|