Phylogenetic analysis of Asian Symplocos (Symplocaceae) based on nuclear and chloroplast DNA sequences

Journal of Plant Research

Volumn 117, Issue 3, 2004, Pages 199-207

  Soejima, Akiko ^a   Nagamasu, Hidetoshi ^b  

^a Osaka City University   (Japan)

^b KYOTO UNIVERSITY   (Japan)

Author keywords

ITS; Phylogeny; Symplocaceae; Symplocos; trnH psbA; trnL trnF

Indexed keywords

EMBRYOPHYTA; MAGNOLIOPHYTA; SYMPLOCACEAE; SYMPLOCOS; SYMPLOCOS AUSTROMEXICANA; SYMPLOCOS SONOHARAE;

EID: 3242697768     PISSN: 09189440     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10265-004-0151-9     Document Type: Article

References (42)

1. Angiosperm Phylogeny Group (2003) An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot J Linn Soc 141:399-436
2. Baldwin BG (1993) Molecular phylogenetics of Calycadenia (Compositae) based on ITS sequences of nuclear ribosomal DNA: chromosomal and morphological evolution reexamined. Am J Bot 80:222-238
3. Baldwin BG, Sanderson MJ, Porter JM, Wojciechowski MF, Campbell CS, Donoghue MJ (1995) The ITS region of nuclear ribosomal DNA: a valuable source of evidence on angiosperm phylogeny. Ann Mo Bot Gard 82:247-277
4. Barth OM (1979) Pollen morphology of Brazilian Symplocos species (Symplocaceae). Grana 18:99-107
5. Barth OM (1982) The sporoderm of Brazilian Symplocos species (Symplocaceae). Grana 21:65-69
6. Bentham G, Hooker JD (1876) Genera Plantarum, vol 2(2). Lovell Reeve, London
7. Brand A (1901) Symplocaceae. Das Pflanzenreich 6. Wilhelm Engelmann, Leipzig
8. Bull JJ, Huelsenbeck JP, Cunningham CW, Swofford DL, Waddell PJ (1993) Partitioning and combining data in phylogenetic analysis. Syst Biol 42:384-397
9. Caris P, Decraene LPR, Smets E, Clickemaillie D (2002) The uncertain systematic position of Symplocos (Symplocaceae): evidence from a floral ontogenetic study. Int J Plant Sci 163:67-74
10. Chase MW, Soltis DE, Olmstead RG, Morgan D, Les DH, Mishler BD, Duvall MR, Price RA, Hills HG, Qiu Y-L, Kron KA, Rettig JH, Conti E, Palmer JD, Manhart JR, Sytsma KJ, Michaels HJ, Kress WJ, Karol KG, Clark WD, Hedrén M, Gaut BS, Jansen RK, Kim K-J, Wimpee CF, Smith JF, Furnier GR, Strauss SH, Xiang Q-Y, Plunkett GM, Soltis PS, Swensen SM, Williams SE, Gadek PA, Quinn CJ, Eguiarte LE, Golenberg E, Learn GH, Graham Jr. SW, Barrett SCH, Dayanandan S, Albert VA (1993) Phylogenetics of seed plants: an analysis of nucleotide sequences from the plastid gene rbcL. Ann Mo Bot Gard 80:528-580
11. Clegg MT, Gaut BS, Learn GH Jr., Morton BR (1994) Rates and patterns of chloroplast DNA evolution. Proc Natl Acad Sci USA 91:6795-6801
12. Cronquist A (1981) An integrated system of classification of flowering plants. Columbia University Press, New York
13. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39:783-791
14. Fujii N, Ueda K, Watano Y, Shimizu T (1997) Intraspecific sequence variation of chloroplast DNA in Pedicularis chamissonis Steven (Scrophulariaceae) and geographic structuring of the Japanese "alpine" plants. J Plant Res 110:195-207
15. Gielly L, Taberlet P (1994) The use of chloroplast DNA to resolve plant phylogenies: noncoding versus rbcL sequences. Mol Biol Evol 11:769-777
16. Hamilton MB (1999) Four primer pairs for the amplification of chloroplast intergenic regions of intraspecific variation. Mol Ecol 8:521-523
17. Handel-Mazzetti H, Peter-Stibal E (1943) Eine Revision der chinesischen Arten der Gattung Symplocos Jacq. Beih Bot Centralbl 62B:1-42
18. Hara H (1948) Enumeratio Spermatophytarum Japonicarum I. Iwanami-shoten, Tokyo
19. Hasebe M, Iwatsuki K (1990) Adiantum capillus-veneris chloroplast DNA clone bank: as useful heterologous probes in the systematics of the leptosporangiate ferns. Am Fern J 80:20-25
20. Hatusima S (1936) Miscellaneous notes on the Symplocaceae of Eastern Asia. J Jpn Bot 12:279-283
21. Meijden R van der (1970) A survey of the pollen morphology of the Indo-Pacific species of Symplocos (Symplocaceae). Pollen Spores 12:513-551
22. Miers J (1879) On the Symplocaceae. J Linn Soc 17:283-306
23. Morton CM, Chase MW, Kron KA, Swensen SM (1996) A molecular evaluation of the monophyly of the order Ebenales based upon rbcL sequence data. Syst Bot 21:567-586
24. Nagamasu H (1989a) Pollen morphology of Japanese Symplocos (Symplocaceae). Bot Mag (Tokyo) 102:149-164
25. Nagamasu H (1989b) Pollen morphology and relationship of Symplocos tinctoria (L.f.) L'Her. (Symplocaceae). Bot Gaz 150:314-318
26. Nagamasu H (1993) The Symplocaceae of Japan. Contrib Biol Lab, Kyoto Univ 28:173-260
27. Nooteboom HP (1975) Revision of the Symplocaceae of the Old World, New Caledonia excepted. Leid Bot Ser, vol 1. Universitaire Pers Leiden
28. Ohsako T, Ohnishi O (2000) Intra- and interspecific phylogeny of wild Fagopyrum (Polygonaceae) species based on nucleotide sequences of noncoding regions in chloroplast DNA. Am J Bot 87:573-582
29. Sang T, Crawford DJ, Stuessy TF (1997) Chloroplast DNA phylogeny, reticulate evolution, and biogeography of Paeonia (Paeoniaceae). Am J Bot 84:1120-1136
30. Savolainen V, Chase MW, Hoot SB, Morton CM, Soltis DE, Clemens B, Fay MF, De Bruijn AY, Sullivan S, Qiu Y-L (2000a) Phylogenetics of flowering plants based on combined analysis of plastid atpB and rbcL gene sequences. Syst Biol 49:306-362
31. Savolainen V, Fay MF, Albach DC, Backlund A, van der Bank M, Cameron KM, Johnson SA, Lledó MD, Pintaud J-C, Powell M, Sheahan MC, Soltis DE, Soltis PS, Weston P, Whitten WM, Wurdack KJ, Chase MW (2000b) Phylogeny of the eudicots: a nearly complete familial analysis based on rbcL gene sequences. Kew Bull 55:257-309
32. Slowinski JB, Page RDM (1999) How should species phylogenies be inferred from sequence data? Syst Biol 48:814-825
33. Small RL, Ryburn JA, Cronn RC, Seelanan T, Wendel JF (1998) The tortoise and the hare: choosing between noncoding plastome and nuclear ADH sequences for phylogeny reconstruction in a recently diverged plant group. Am J Bot 85:1301-1315
34. Soejima A, Nagamasu H, Ito M, Ono M (1994) Allozyme diversity and the evolution of Symplocos (Symplocaceae) on the Bonin (Ogasawara) Islands. J Plant Res 107:221-228
35. Soltis DE, Soltis PS, Chase MW, Mort ME, Albach DC, Zanis M, Savolainen V, Hahn WH, Hoot SB, Fay MF, Axtell M, Swensen SM, Prince LM, Kress WJ, Nixon KC, Farris JS (2000) Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences. Bot J Linn Soc 133:381-461
36. Swofford DL (2001) PAUP*: phylogenetic analysis using parsimony (*and other methods). Version 4.0b8. Sinauer, Sunderland, Massachusetts
37. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Mol Biol 17:1105-1109
38. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M et al. (eds) PCR protocols: a guide to methods and application. Academic, San Diego, pp 315-322
39. Wolfe KH, Lie W-H, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054-9058
40. Wu Y-F (1987) Symplocaceae. Flora Republicae Popularis Sinicae 60:1-77
41. Wu RF, Nooteboom HP (1996) Symplocaceae. In: Wu ZY, Raven PH (eds), Flora of China 15:235-252
42. Yokota Y, Kawata T, Iida Y, Kato A, Tanifuji S (1989) Nucleotide sequences of the 5.8S rRNA gene and internal transcribed spacer regions in carrot and broad bean ribosomal DNA. J Mol Evol 29:294-301