Population structure and genetic diversity in Swainson's Hawks (Buteo swainsoni): Implications for conservation

Conservation Genetics

Volumn 9, Issue 2, 2008, Pages 305-316

  Hull, Joshua M ^a   Anderson, Richard ^b   Bradbury, Michael ^b   Estep, James A ^b   Ernest, Holly B ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b Department of Water Resources ^*  (United States)

Author keywords

Buteo swainsoni; Microsatellite; Mitochondrial DNA; Population genetics; Swainson's Hawk

Indexed keywords

CONSERVATION MANAGEMENT; GENETIC DIFFERENTIATION; GENOTYPE; MITOCHONDRIAL DNA; POPULATION DECLINE; POPULATION GENETICS; POPULATION STRUCTURE; RAPTOR; SPECIES CONSERVATION;

BASIN AND RANGE PROVINCE; CALIFORNIA; CENTRAL VALLEY [CALIFORNIA]; GREAT BASIN; GREAT PLAINS; NORTH AMERICA; UNITED STATES;

ACCIPITRINAE; BUTEO SWAINSONI; RAPTORES;

EID: 43349102961     PISSN: 15660621     EISSN: 15729737     Source Type: Journal    
DOI: 10.1007/s10592-007-9342-y     Document Type: Article

References (64)

1. Anderson D, Anderson R, Bradbury M et al (2006) California Swainson's Hawk Inventory: 2005-2006. 2005 Progress Report. California Department of Fish and Game, Resource Assessment Program. 15pp
2. Balloux F, Brünner H, Lugon-Moulin N et al (2000) Microsatellites can be misleading: an empirical and simulation study. Evolution 54:1414-1422
3. Balloux F (2001) EASYPOP (version 1.7), 2001. A computer program for the simulation of population genetics. J Heredity 92:301-302
4. Balloux F, Lugon-Moulin N (2002) The estimation of population differentiation with microsatellite markers. Mol Ecol 11:155-165
5. Baker AJ, Marshall HD (1997) Mitochondrial control region sequences as tools for understanding evolution. In: Mindell D (ed) Avian Molecular Evolution And Systematics. Academic Press, USA, pp 51-82
6. Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16:37-48
7. Berthold P, Helbig AJ, Querner U (1992) Rapid microevolution of migratory behaviour in a wild bird species. Nature 360:668-670
8. Bloom PH (1980) The status of the Swainson's Hawk in California, 1979. Wildlife Management Branch, Nongame Wildlife Investigations, Job II-8.0. California Department of Fish and Game, Sacramento, CA
9. Bollmer JL, Whiteman NK, Cannon MD et al (2005) Population genetics of the Galápagos hawk (Buteo galapagoensis): genetic monomorphism within isolated populations. The Auk 122:1210-1224
10. Bollmer JL, Kimall RT, Whiteman NK et al (2006) Phylogeography of the Galápagos hawk (Buteo galapagoensis): a recent arrival to the Galápagos Islands. Mol Phylogenetics Evol 39:237-247
11. England AS, Bechard MJ, Houston CS (1997) Swainson's Hawk (Buteo swainsoni). In: Poole A, Gill F (eds) The birds of North America, No. 265. The Academy of Natural Sciences, Philadelphia, PA, and The American Ornithologists' Union, Washington, DC
12. Estep JA (1989) Biology, movements, and habitat relationships of the Swainson's Hawk in the Central Valley of California, 1986-87. California Department of Fish and Game, Nongame Bird and Mammal Section Report
13. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611-2620
14. Excoffier L, Laval G, Schneider S (2005) Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evolut Bioinform Online 1:47-50
15. Frankham R (1997) Do island populations have less genetic variation than mainland populations? Heredity 78:311-327
16. Frankham R, Ballou JD, Broscoe DA (2002) Introduction to conservation genetics. Cambridge University Press, Cambridge, UK
17. Fu Y (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking, and background selection. Genetics 147:915-925
18. Fu Y, Li WH (1993) Statistical tests of neutrality of mutations. Genetics 133:693-709
19. Geyer C, Ryder O, Chemnick L et al (1993) Analysis of relatedness in the California condors from DNA fingerprints. Mol Biol Evol 10:571-589
20. Glaubitz JC (2004) CONVERT: a user friendly program to reformat diploid genotypic data for commonly used population genetic software packages. Molecular Ecology Notes 4:309-310
21. Goldstein MI, Lacher Jr TE, Woodbridge B et al (1999) Monocrotophos-induced mass mortality of Swainson's hawks in Argentina, 1995-96. Ecotoxicology 8:201-214
22. Goudet J (1995) FSTAT (version 1.2): a computer program to calculate F-statistics. J Heredity 86:485-486
23. Grinnell J (1944) The distribution of the birds of California. The Cooper Ornithological Club
24. Guo SW, Thompson EA (1992) Performing the exact test of Hardy-Weinberg proportion for multiple alleles. Biometrics 48:361-372
25. Hedrick PW (1999) Highly variable loci and their interpretation in evolution and conservation. Evolution 53:313-318
26. Herzog SL (1996) Wintering Swaison's Hawks in California's Sacramento-San Joaquin River Delta. The Condor 98:876-879
27. Houston CS (1990) Saskatchewan Swainson's Hawks. American Birds 4:215-220
28. Houston CS, Schmutz JK (1995) Declining reproduction among Swainson's Hawks in prairie Canada. J Raptor Res 29:198-201
29. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics Application Notes 17:754-755
30. Hull, JM, D Tufts, JR Topinka, BP May, HB Ernest (2006) Development of 19 microsatellite loci for Swainson's Hawks (Buteo swainsoni) and other Buteos. Molecular Ecology Notes
31. Hull JM, Girman DJ (2005) Effects of Holocene climate change on the historical demography of migrating sharp-shinned hawks (Accipiter striatus) in North America. Mol Ecol 14:159-170
32. Kimball RT, Braun EL, Zwartjes PW et al (1999) A molecular phylogeny of the pheasants and partridges suggests that these lineages are not monophyletic. Molecular Phylogenetics and Evolution 11:38-54
33. Martínez-Cruz B, Godoy A, Negro JJ (2004) Population genetics after fragmentation: the case of the endangered Spanish imperial eagle (Aquila adalberti). Molecular Ecology 13:2243-2255
34. Milot E, Gibbs HL, Hobson KA (2000) Phylogeography and genetic structure of northern populations of the yellow warbler (Dendroica petechia). Mol Ecol 9:667-681
35. Moritz C (1994) Defining "evolutionarily significant units" for conservation. Trends Ecol Evol 9:373-375
36. Newton I (1991) Population limitation in birds of prey: a comparative approach. In: Perrins CM, Lebreton JD, Hirons GKM (eds) Bird population studies: relevance to conservation and management. Oxford University Press, Oxford, UK, pp. 3-21
37. Nichols RA, Bruford MW, Groombridge JJ (2001) Sustaining genetic variation in a small population: evidence from the Mauritius kestrel. Mol Ecol 10:593-602
38. Nylander JAA (2004) MrModeltest v2. Program distributed by the author. Evolutionary Biology Centre, Uppsala University
39. Paetkau D, Slade R, Burden M et al (2004) Genetic assignment methods for the direct, real-time estimation of migration rate: a simulation-based exploration of accuracy and power. Mol Ecol 13:55-65
40. Park SDE (2001) Trypanotolerance in West African Cattle and the population genetic effects of selection. Dissertation, University of Dublin
41. Peck DR, Congdon BC (2004) Reconciling historical processes and population structure in the sooty tern Sterna fuscata. J Avian Biol 35:327-335
42. Piry S, Luikart G, Cornuet J-M (1999) BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data. J Heredity 90:502-503
43. Piry S, Alapetite A, Cornuet JM et al (2004) GENECLASS2: a software for genetic assignment and first-generation migrant detection. J Heredity 95:536-539
44. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945-959
45. Pritchard JK, Wen W (2002) Documentation for Structure Software Version 2 http://pritch.bsd.uchicago.edu
46. Rannala M, Mountain JL (1997) Detecting immigration by using multilocus genotypes. Proc Nat Acad Sci USA 94:9197-9221
47. Raymond M, Rousset F (1995) GENEPOP Version 1.2: population genetics software for exact tests and ecumenicism. J Heredity 86:248-249
48. Risenbrough RW, Schlorff RW, Bloom PH et al (1989) Investigations of the decline of Swainson's Hawk populations in California. J Raptor Res 23:63-71
49. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic differences. Mol Biol Evol 9:552-569
50. Roques S, Negro JJ (2005) MtDNA genetic diversity and population history of a dwindling raptorial bird, the kite (Milvus milvus). Biol Conserv 126:41-50
51. Rozas J, Sánchez-De JC, Barrio I et al (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19:2496-2497
52. Shepard JM, Hughes JM, Catterall CP, Olsen PD (2005) Conservation status of the White-Bellied Sea-Eagle Haliaeetus leucogaster in Australia determined using control region sequence data. Conservation Genetics 6:413-429
53. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics 139:457-462
54. Smouse PE, Long JC, Sokal RR (1986) Multiple regression and correlation extensions of the Mantel test of matrix correspondence. Systemat Zool 35:627-632
55. Sorenson MD, Quinn TW (1998) Numts: A challenge for avian systematics and population biology. The Auk 115:214-221
56. Swofford DL (2002) PAUP*: Phylogenetic analysis using parsimony (*and other methods), version 4.0b10. Sinauer Associates, Sunderland, Massachusetts
57. Tajima F (1989) Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123:585-595
58. Toonen RJ, Hughes S (2001) Increased throughput for fragment analysis on an ABI Prism® 377 automated sequencer using a membrane Comb and STR and Software. Biotechniques 31:1320-1324
59. van Oosterhout C, Hutchinson WF, Wills DPM et al (2004) MICRO-CHECKER: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4:535-538
60. Waples RS, Gaggiotti O (2006) What is a population? An empirical evaluation of some genetic methods for identifying the number of gene pools and their degree of connectivity. Mol Ecol 15:1419-1439
61. Wenink PW, Baker AJ, Rösner H-U et al (1996) Global mitochondrial phylogeny of holarctic breeding dunlins (Calidris alpine). Evolution 50:318-330
62. Wheeler BK (2003) Raptors of Western North America. Princeton University Press, Princeton, USA
63. Woodbridge B, Finley KK, Bloom PH (1995) Reproductive performance, age structure, and natal dispersal of Swainson's Hawks in the Butte Valley, California. J Raptor Res 29:187-192
64. Zar JH (1999) Biostatistical analysis, 4th edn. Prentice Hall, Upper Saddle River, New Jersey