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Volumn 53, Issue 5, 2008, Pages 746-750

Positive correlation between recombination rate and nucleotide diversity is shown under domestication selection in the chicken genome

Author keywords

Chicken; Domestication selection; Nucleotide diversity; Positive correlation; Recombination rate

Indexed keywords

EUKARYOTA;

EID: 43249091960     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-008-0159-y     Document Type: Article
Times cited : (12)

References (24)
  • 1
    • 0026529344 scopus 로고
    • Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster
    • 6369
    • Begun D J, Aquadro C F. Levels of naturally occurring DNA polymorphism correlate with recombination rates in D. melanogaster. Nature, 1992, 356(6369): 519-520
    • (1992) Nature , vol.356 , pp. 519-520
    • Begun, D.J.1    Aquadro, C.F.2
  • 2
    • 0038305577 scopus 로고    scopus 로고
    • Selection at linked sites in the partial selfer Caenorhabditis elegans
    • 5
    • Cutter A D, Payseur B A. Selection at linked sites in the partial selfer Caenorhabditis elegans. Mol Biol Evol, 2003, 20(5): 665-673
    • (2003) Mol Biol Evol , vol.20 , pp. 665-673
    • Cutter, A.D.1    Payseur, B.A.2
  • 3
    • 0035979181 scopus 로고    scopus 로고
    • Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.)
    • 16
    • Tenaillon M I, Sawkins M C, Long A D, et al. Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.). Proc Natl Acad Sci USA, 2001, 98(16): 9161-9166
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 9161-9166
    • Tenaillon, M.I.1    Sawkins, M.C.2    Long, A.D.3
  • 4
    • 0030726434 scopus 로고    scopus 로고
    • Patterns of DNA variability at X-linked loci in Mus domesticus
    • 3
    • Nachman M W. Patterns of DNA variability at X-linked loci in Mus domesticus. Genetics, 1997, 147(3): 1303-1316
    • (1997) Genetics , vol.147 , pp. 1303-1316
    • Nachman, M.W.1
  • 5
    • 1542563409 scopus 로고    scopus 로고
    • Initial sequencing and comparative analysis of the mouse genome
    • 6915
    • Waterston R H, Lindblad-Toh K, Birney E, et al. Initial sequencing and comparative analysis of the mouse genome. Nature, 2002, 420(6915): 520-562
    • (2002) Nature , vol.420 , pp. 520-562
    • Waterston, R.H.1    Lindblad-Toh, K.2    Birney, E.3
  • 6
    • 0035451450 scopus 로고    scopus 로고
    • Single nucleotide polymorphisms and recombination rate in humans
    • 9
    • Nachman M W. Single nucleotide polymorphisms and recombination rate in humans. Trends Genet, 2001, 17(9): 481-485
    • (2001) Trends Genet , vol.17 , pp. 481-485
    • Nachman, M.W.1
  • 7
    • 0036640951 scopus 로고    scopus 로고
    • Human SNP variability and mutation rate are higher in regions of high recombination
    • 7
    • Lercher M J, Hurst L D. Human SNP variability and mutation rate are higher in regions of high recombination. Trends Genet, 2002, 18(7): 337-340
    • (2002) Trends Genet , vol.18 , pp. 337-340
    • Lercher, M.J.1    Hurst, L.D.2
  • 8
    • 0028304617 scopus 로고
    • How can the low levels of DNA sequence variation in regions of the Drosophila genome with low recombination rates be explained?
    • 15
    • Hudson R R. How can the low levels of DNA sequence variation in regions of the Drosophila genome with low recombination rates be explained? Proc Natl Acad Sci USA, 1994, 91(15): 6815-6818
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 6815-6818
    • Hudson, R.R.1
  • 9
    • 0038015586 scopus 로고    scopus 로고
    • A neutral explanation for the correlation of diversity with recombination rates in humans
    • 6
    • Hellmann I, Ebersberger I, Ptak S E, et al. A neutral explanation for the correlation of diversity with recombination rates in humans. Am J Hum Genet, 2003, 72(6): 1527-1535
    • (2003) Am J Hum Genet , vol.72 , pp. 1527-1535
    • Hellmann, I.1    Ebersberger, I.2    Ptak, S.E.3
  • 10
    • 0027235978 scopus 로고
    • Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster
    • 4
    • Wiehe T H, Stephan W. Analysis of a genetic hitchhiking model, and its application to DNA polymorphism data from Drosophila melanogaster. Mol Biol Evol, 1993, 10(4): 842-854
    • (1993) Mol Biol Evol , vol.10 , pp. 842-854
    • Wiehe, T.H.1    Stephan, W.2
  • 11
    • 0027305597 scopus 로고
    • The effect of deleterious mutations on neutral molecular variation
    • 4
    • Charlesworth B, Morgan M T, Charlesworth D. The effect of deleterious mutations on neutral molecular variation. Genetics, 1993, 134(4): 1289-1303
    • (1993) Genetics , vol.134 , pp. 1289-1303
    • Charlesworth, B.1    Morgan, M.T.2    Charlesworth, D.3
  • 12
    • 10644271562 scopus 로고    scopus 로고
    • A genetic variation map for chicken with 2.8 million singlenucleotide polymorphisms
    • 7018
    • Wong G K, Liu B, Wang J, et al. A genetic variation map for chicken with 2.8 million singlenucleotide polymorphisms. Nature, 2004, 432(7018): 717-722
    • (2004) Nature , vol.432 , pp. 717-722
    • Wong, G.K.1    Liu, B.2    Wang, J.3
  • 13
    • 10644283823 scopus 로고    scopus 로고
    • Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    • 7018
    • Hillier L W, Miller W, Birney E, et al. Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution. Nature, 2004, 432(7018): 695-716
    • (2004) Nature , vol.432 , pp. 695-716
    • Hillier, L.W.1    Miller, W.2    Birney, E.3
  • 14
    • 0033962741 scopus 로고    scopus 로고
    • A consensus linkage map of the chicken genome
    • 1
    • Groenen M A, Cheng H H, Bumstead N, et al. A consensus linkage map of the chicken genome. Genome Res, 2000, 10(1): 137-147
    • (2000) Genome Res , vol.10 , pp. 137-147
    • Groenen, M.A.1    Cheng, H.H.2    Bumstead, N.3
  • 15
    • 0034534753 scopus 로고    scopus 로고
    • First report on chicken genes and chromosomes 2000
    • 3-4
    • Schmid M, Nanda I, Guttenbach M, et al. First report on chicken genes and chromosomes 2000. Cytogenet Cell Genet, 2000, 90(3-4): 169-218
    • (2000) Cytogenet Cell Genet , vol.90 , pp. 169-218
    • Schmid, M.1    Nanda, I.2    Guttenbach, M.3
  • 16
    • 0346445382 scopus 로고    scopus 로고
    • Integration of animal linkage and BAC contig maps using overgo hybridization
    • 1-4
    • Romanov M N, Price J A, Dodgson J B. Integration of animal linkage and BAC contig maps using overgo hybridization. Cytogenet Genome Res, 2003, 102(1-4): 277-281
    • (2003) Cytogenet Genome Res , vol.102 , pp. 277-281
    • Romanov, M.N.1    Price, J.A.2    Dodgson, J.B.3
  • 17
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • Ewing B, Hillier L, Wendl M C, et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res, 1998, 8: 175-185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3
  • 18
    • 0031978181 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. II. Error probabilities
    • Ewing B, Green P. Base-calling of automated sequencer traces using phred. II. Error probabilities. Genome Res, 1998, 8: 186-194
    • (1998) Genome Res , vol.8 , pp. 186-194
    • Ewing, B.1    Green, P.2
  • 19
    • 13444312068 scopus 로고    scopus 로고
    • ChickVD: A sequence variation database for the chicken genome
    • Wang J, He X M, Ruan J, et al. ChickVD: A sequence variation database for the chicken genome. Nucleic Acids Res, 2005, 33(Database issue): 438-441
    • (2005) Nucleic Acids Res , vol.33 , pp. 438-441
    • Wang, J.1    He, X.M.2    Ruan, J.3
  • 20
    • 12744271852 scopus 로고    scopus 로고
    • Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes
    • 1
    • Axelsson E, Webser M T, Smith N G, et al. Comparison of the chicken and turkey genomes reveals a higher rate of nucleotide divergence on microchromosomes than macrochromosomes. Genome Res, 2005, 15(1): 120-125
    • (2005) Genome Res , vol.15 , pp. 120-125
    • Axelsson, E.1    Webser, M.T.2    Smith, N.G.3
  • 21
  • 22
    • 0033991967 scopus 로고    scopus 로고
    • Isochores and the evolutionary genomics of vertebrates
    • 1
    • Bernardi G. Isochores and the evolutionary genomics of vertebrates. Gene, 2000, 241(1): 3-17
    • (2000) Gene , vol.241 , pp. 3-17
    • Bernardi, G.1
  • 23
    • 0038543069 scopus 로고    scopus 로고
    • Biased gene conversion: Implications for genome and sex evolution
    • 6
    • Marais G. Biased gene conversion: implications for genome and sex evolution. Trends Genet, 2003, 19(6): 330-338
    • (2003) Trends Genet , vol.19 , pp. 330-338
    • Marais, G.1
  • 24
    • 2042437650 scopus 로고    scopus 로고
    • Initial sequencing and analysis of the human genome
    • 6822
    • Lander E S, Linton L M, Birren B, et al. Initial sequencing and analysis of the human genome. Nature, 2001, 409(6822): 860-921
    • (2001) Nature , vol.409 , pp. 860-921
    • Lander, E.S.1    Linton, L.M.2    Birren, B.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.