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Volumn 66, Issue 4, 2008, Pages 405-415

Multilevel control of organelle DNA sequence length in plants

Author keywords

Chloroplast; G ST; Mitochondria; Nucleotide composition; Organelle inheritance; Replication race

Indexed keywords

NUCLEOTIDE; SPACER DNA;

EID: 43149126581     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00239-008-9095-3     Document Type: Article
Times cited : (6)

References (65)
  • 1
    • 0000025419 scopus 로고    scopus 로고
    • A method for testing the assumption of phylogenetic independence in comparative data
    • Abouheif E (1999) A method for testing the assumption of phylogenetic independence in comparative data. Evol Ecol Res 1:895-909
    • (1999) Evol Ecol Res , vol.1 , pp. 895-909
    • Abouheif, E.1
  • 2
    • 0033709077 scopus 로고    scopus 로고
    • Taxon sampling, correlated evolution, and independent contrasts
    • Ackerly DD (2000) Taxon sampling, correlated evolution, and independent contrasts. Evolution 54:1480-1492
    • (2000) Evolution , vol.54 , pp. 1480-1492
    • Ackerly, D.D.1
  • 5
    • 0033928041 scopus 로고    scopus 로고
    • Comparative genomics of mitochondrial DNA in Drosophila simulans
    • Ballard JWO (2000) Comparative genomics of mitochondrial DNA in Drosophila simulans. J Mol Evol 51:64-75
    • (2000) J Mol Evol , vol.51 , pp. 64-75
    • Ballard, J.W.O.1
  • 6
    • 0020600827 scopus 로고
    • Relaxed cellular controls and organelle heredity
    • Birky CWJ (1983) Relaxed cellular controls and organelle heredity. Science 222:468-475
    • (1983) Science , vol.222 , pp. 468-475
    • Birky, C.W.J.1
  • 7
    • 0029610067 scopus 로고
    • Uniparental inheritance of mitochondrial and chloroplast genes: Mechanisms and evolution
    • Birky CW Jr (1995) Uniparental inheritance of mitochondrial and chloroplast genes: mechanisms and evolution. Proc Natl Acad Sci USA 92:11331-11338
    • (1995) Proc Natl Acad Sci USA , vol.92 , pp. 11331-11338
    • Birky Jr., C.W.1
  • 8
    • 0031882316 scopus 로고    scopus 로고
    • Slow rate of molecular evolution in high-elevation hummingbirds
    • Bleiweiss R (1998) Slow rate of molecular evolution in high-elevation hummingbirds. Proc Natl Acad Sci USA 95:612-616
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 612-616
    • Bleiweiss, R.1
  • 9
    • 0038325772 scopus 로고    scopus 로고
    • Testing for phylogenetic signal in comparative data: Behavioral traits are more labile
    • Blomberg SP, Garland T, Ives AR (2003) Testing for phylogenetic signal in comparative data: behavioral traits are more labile. Evolution 57:717-745
    • (2003) Evolution , vol.57 , pp. 717-745
    • Blomberg, S.P.1    Garland, T.2    Ives, A.R.3
  • 10
    • 0034789253 scopus 로고    scopus 로고
    • Phylogenetic relationships in the Caesalpinioideae (Leguminosae) as inferred from chloroplast trnL intron sequences
    • Bruneau A, Forest F, Herendeen PS, Klitgaard BB, Lewis GP (2001) Phylogenetic relationships in the Caesalpinioideae (Leguminosae) as inferred from chloroplast trnL intron sequences. Syst Bot 26:487-514
    • (2001) Syst Bot , vol.26 , pp. 487-514
    • Bruneau, A.1    Forest, F.2    Herendeen, P.S.3    Klitgaard, B.B.4    Lewis, G.P.5
  • 11
    • 0001193786 scopus 로고    scopus 로고
    • To Bonferroni or not to Bonferroni: When and how are the questions
    • Cabin RJ, Mitchell RJ (2000) To Bonferroni or not to Bonferroni: when and how are the questions. ESA Bull 81:246-248
    • (2000) ESA Bull , vol.81 , pp. 246-248
    • Cabin, R.J.1    Mitchell, R.J.2
  • 12
    • 2442667671 scopus 로고    scopus 로고
    • A phylogenomic study of endosymbiotic bacteria
    • Canbäck B, Tamas I, Andersson SGE (2004) A phylogenomic study of endosymbiotic bacteria. Mol Biol Evol 21:1110-1122
    • (2004) Mol Biol Evol , vol.21 , pp. 1110-1122
    • Canbäck, B.1    Tamas, I.2    Andersson, S.G.E.3
  • 13
    • 0036661386 scopus 로고    scopus 로고
    • A case of chloroplast heteroplasmy in kiwifruit (Actinidia deliciosa) that is not transmitted during sexual reproduction
    • Chat J, Decroocq S, Decroocq V, Petit RJ (2002) A case of chloroplast heteroplasmy in kiwifruit (Actinidia deliciosa) that is not transmitted during sexual reproduction. J Hered 93:293-300
    • (2002) J Hered , vol.93 , pp. 293-300
    • Chat, J.1    Decroocq, S.2    Decroocq, V.3    Petit, R.J.4
  • 14
    • 0026732706 scopus 로고
    • A pattern of accumulation of a somatic deletion of mitochondrial DNA in aging human tissues
    • Cortopassi GA, Shibatan D, Soong N-W, Arnheim N (1992) A pattern of accumulation of a somatic deletion of mitochondrial DNA in aging human tissues. Proc Natl Acad Sci USA 89:7370-7374
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 7370-7374
    • Cortopassi, G.A.1    Shibatan, D.2    Soong, N.-W.3    Arnheim, N.4
  • 15
    • 0036188663 scopus 로고    scopus 로고
    • Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK sequences
    • Cuénoud P, Savolainen V, Chatrou L, Powell M, Grayer R, Chase MW (2002) Molecular phylogenetics of Caryophyllales based on nuclear 18S rDNA and plastid rbcL, atpB, and matK sequences. Am J Bot 89:132-144
    • (2002) Am J Bot , vol.89 , pp. 132-144
    • Cuénoud, P.1    Savolainen, V.2    Chatrou, L.3    Powell, M.4    Grayer, R.5    Chase, M.W.6
  • 16
    • 0036225307 scopus 로고    scopus 로고
    • Comparative analysis of chloroplast genomes: Functional annotation, genome-based phylogeny, and deduced evolutionary patterns
    • De Las Rivas J, Lozano JJ, Ortiz AR (2002) Comparative analysis of chloroplast genomes: functional annotation, genome-based phylogeny, and deduced evolutionary patterns. Genome Res 12:567-83
    • (2002) Genome Res , vol.12 , pp. 567-83
    • De Las Rivas, J.1    Lozano, J.J.2    Ortiz, A.R.3
  • 17
    • 0036898179 scopus 로고    scopus 로고
    • A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA
    • Duminil J, Pemonge MH, Petit RJ (2002) A set of 35 consensus primer pairs amplifying genes and introns of plant mitochondrial DNA. Mol Ecol Notes 2:428-430
    • (2002) Mol Ecol Notes , vol.2 , pp. 428-430
    • Duminil, J.1    Pemonge, M.H.2    Petit, R.J.3
  • 18
    • 0022203256 scopus 로고
    • Phylogenies and the comparative method
    • Felsenstein J (1985) Phylogenies and the comparative method. Am Nat 125:1-15
    • (1985) Am Nat , vol.125 , pp. 1-15
    • Felsenstein, J.1
  • 19
    • 0036920097 scopus 로고    scopus 로고
    • Phylogenetic analysis and comparative data: A test and review of evidence
    • Freckleton RP, Harvey PH, Pagel M (2002) Phylogenetic analysis and comparative data: a test and review of evidence. Am Nat 160:712-726
    • (2002) Am Nat , vol.160 , pp. 712-726
    • Freckleton, R.P.1    Harvey, P.H.2    Pagel, M.3
  • 20
    • 0029812835 scopus 로고    scopus 로고
    • Substitution rate comparisons between grasses and palms: Synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL
    • Gaut BS, Morton BR, McCaig BC, Clegg MT (1996) Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. Proc Natl Acad Sci USA 93:10274-10279
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 10274-10279
    • Gaut, B.S.1    Morton, B.R.2    McCaig, B.C.3    Clegg, M.T.4
  • 21
    • 0000789632 scopus 로고    scopus 로고
    • Genome walking with consensus primers: Application to the large single copy region of chloroplast DNA
    • Grivet D, Heinze B, Vendramin GG, Petit RJ (2001) Genome walking with consensus primers: application to the large single copy region of chloroplast DNA. Mol Ecol Notes 1:345-349
    • (2001) Mol Ecol Notes , vol.1 , pp. 345-349
    • Grivet, D.1    Heinze, B.2    Vendramin, G.G.3    Petit, R.J.4
  • 23
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall TA (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl Acids Symp Ser 41:95-98
    • (1999) Nucl Acids Symp Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 24
    • 0000691694 scopus 로고
    • Chloroplast DNA and biosystematics: The effects of intraspecific diversity and plastid transmission
    • Harris SA, Ingram R (1991) Chloroplast DNA and biosystematics: the effects of intraspecific diversity and plastid transmission. Taxon 40:393-412
    • (1991) Taxon , vol.40 , pp. 393-412
    • Harris, S.A.1    Ingram, R.2
  • 25
    • 0018967107 scopus 로고
    • Nucleotide sequence of the yeast plasmid
    • Hartley JL, Donelson JE (1980) Nucleotide sequence of the yeast plasmid. Nature 286:860-865
    • (1980) Nature , vol.286 , pp. 860-865
    • Hartley, J.L.1    Donelson, J.E.2
  • 26
    • 0002294347 scopus 로고
    • A simple sequentially rejective multiple test procedure
    • Holm S (1979) A simple sequentially rejective multiple test procedure. Scand J Stat 6:65-70
    • (1979) Scand J Stat , vol.6 , pp. 65-70
    • Holm, S.1
  • 27
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • Ihaka A, Gentleman R (1996) R: a language for data analysis and graphics. J Comput Graph Stat 5:299-314
    • (1996) J Comput Graph Stat , vol.5 , pp. 299-314
    • Ihaka, A.1    Gentleman, R.2
  • 28
    • 0035040671 scopus 로고    scopus 로고
    • Elevated rates of nonsynonymous substitution in island birds
    • Johnson KP, Seger J (2001) Elevated rates of nonsynonymous substitution in island birds. Mol Biol Evol 18:874-881
    • (2001) Mol Biol Evol , vol.18 , pp. 874-881
    • Johnson, K.P.1    Seger, J.2
  • 29
    • 0034794587 scopus 로고    scopus 로고
    • RbcL and legume phylogeny, with particular reference to Phaseoleae, Milletieae, and Allies
    • Kajita T, Ohashi H, Tateishi Y (2001) rbcL and legume phylogeny, with particular reference to Phaseoleae, Milletieae, and Allies. Syst Bot 26:515-536
    • (2001) Syst Bot , vol.26 , pp. 515-536
    • Kajita, T.1    Ohashi, H.2    Tateishi, Y.3
  • 30
    • 33745628383 scopus 로고    scopus 로고
    • A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: An approximate molecular clock with life history effects
    • Kay KM, Whittall JB, Hodges SA (2006) A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol Biol 6:36
    • (2006) BMC Evol Biol , vol.6 , pp. 36
    • Kay, K.M.1    Whittall, J.B.2    Hodges, S.A.3
  • 31
    • 0033040987 scopus 로고    scopus 로고
    • Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium
    • Komaki K, Ishikawa H (1999) Intracellular bacterial symbionts of aphids possess many genomic copies per bacterium. J Mol Evol 48:717-722
    • (1999) J Mol Evol , vol.48 , pp. 717-722
    • Komaki, K.1    Ishikawa, H.2
  • 32
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • Kumar S, Tamura K, Jakobsen IB, Nei M (2001) MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17:1244-1245
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 33
    • 19844377877 scopus 로고    scopus 로고
    • Compositional properties of green-plant plastid genomes
    • Kusumi J, Tachida H (2005) Compositional properties of green-plant plastid genomes. J Mol Evol 60:417-425
    • (2005) J Mol Evol , vol.60 , pp. 417-425
    • Kusumi, J.1    Tachida, H.2
  • 34
    • 0032957760 scopus 로고    scopus 로고
    • Evolution of the mitochondrial rps3 intron in perennial and annual angiosperms and homology to nad5 intron 1
    • Laroche J, Bousquet J (1999) Evolution of the mitochondrial rps3 intron in perennial and annual angiosperms and homology to nad5 intron 1. Mol Biol Evol 16:441-452
    • (1999) Mol Biol Evol , vol.16 , pp. 441-452
    • Laroche, J.1    Bousquet, J.2
  • 35
    • 0022005270 scopus 로고
    • A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes
    • Li WH, Wu CI, Luo CC (1985) A new method for estimating synonymous and nonsynonymous rates of nucleotide substitution considering the relative likelihood of nucleotide and codon changes. Mol Biol Evol 2:150-174
    • (1985) Mol Biol Evol , vol.2 , pp. 150-174
    • Li, W.H.1    Wu, C.I.2    Luo, C.C.3
  • 36
    • 0037197986 scopus 로고    scopus 로고
    • Intron evolution as a population-genetic process
    • Lynch M (2002) Intron evolution as a population-genetic process. Proc Natl Acad Sci USA 99:6118-23
    • (2002) Proc Natl Acad Sci USA , vol.99 , pp. 6118-23
    • Lynch, M.1
  • 37
    • 0345306751 scopus 로고    scopus 로고
    • The origins of genome complexity
    • Lynch M, Conery JS (2003) The origins of genome complexity. Science 302:1401-1404
    • (2003) Science , vol.302 , pp. 1401-1404
    • Lynch, M.1    Conery, J.S.2
  • 38
    • 0034237772 scopus 로고    scopus 로고
    • Adaptation and the comparative method
    • Martins EP (2000) Adaptation and the comparative method. Trends Ecol Evol 15:296-299
    • (2000) Trends Ecol Evol , vol.15 , pp. 296-299
    • Martins, E.P.1
  • 40
    • 0026054313 scopus 로고
    • Phylogenetic analyses of the correlated evolution of continuous characters: A simulation study
    • Martins EP, Garland TJ (1991) Phylogenetic analyses of the correlated evolution of continuous characters: a simulation study. Evolution 45:534-557
    • (1991) Evolution , vol.45 , pp. 534-557
    • Martins, E.P.1    Garland, T.J.2
  • 42
    • 0000975370 scopus 로고
    • The interpretation of statistical maps
    • Moran PAP (1948) The interpretation of statistical maps. J Roy Stat Soc B 10:243-250
    • (1948) J Roy Stat Soc B , vol.10 , pp. 243-250
    • Moran, P.A.P.1
  • 43
    • 0027020232 scopus 로고
    • The nearly neutral theory of molecular evolution
    • Ohta T (1992) The nearly neutral theory of molecular evolution. Annu Rev Ecol Syst 23:263-286
    • (1992) Annu Rev Ecol Syst , vol.23 , pp. 263-286
    • Ohta, T.1
  • 44
    • 0026718777 scopus 로고
    • A method for the analysis of comparative data
    • Pagel MD (1992) A method for the analysis of comparative data. J Theor Biol 156:431-442
    • (1992) J Theor Biol , vol.156 , pp. 431-442
    • Pagel, M.D.1
  • 45
    • 0025249858 scopus 로고
    • Contrasting modes and tempos of genome evolution in land plant organelles
    • Palmer JD (1990) Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6:115-120
    • (1990) Trends Genet , vol.6 , pp. 115-120
    • Palmer, J.D.1
  • 47
    • 0027143461 scopus 로고
    • Finite island model for organelle and nuclear genes in plants
    • Petit RJ, Kremer A, Wagner DB (1993) Finite island model for organelle and nuclear genes in plants. Heredity 71:630-641
    • (1993) Heredity , vol.71 , pp. 630-641
    • Petit, R.J.1    Kremer, A.2    Wagner, D.B.3
  • 49
    • 14844333578 scopus 로고    scopus 로고
    • Comparative organisation of chloroplast, mitochondrial and nuclear diversity in plant populations
    • Petit RJ, Duminil J, Fineschi S, Hampe A, Salvini D, Vendramin GG (2005) Comparative organisation of chloroplast, mitochondrial and nuclear diversity in plant populations. Mol Ecol 14:689-701
    • (2005) Mol Ecol , vol.14 , pp. 689-701
    • Petit, R.J.1    Duminil, J.2    Fineschi, S.3    Hampe, A.4    Salvini, D.5    Vendramin, G.G.6
  • 50
    • 0035673444 scopus 로고    scopus 로고
    • The units of selection on mitochondrial DNA
    • Rand DM (2001) The units of selection on mitochondrial DNA. Annu Rev Ecol Syst 32:415-448
    • (2001) Annu Rev Ecol Syst , vol.32 , pp. 415-448
    • Rand, D.M.1
  • 51
    • 0000625869 scopus 로고
    • Analyzing tables of statistical tests
    • Rice WR (1989) Analyzing tables of statistical tests. Evolution 43:223-225
    • (1989) Evolution , vol.43 , pp. 223-225
    • Rice, W.R.1
  • 52
    • 0036606915 scopus 로고    scopus 로고
    • Base composition bias might result from competition for metabolic resources
    • Rocha EPC, Danchin A (2002) Base composition bias might result from competition for metabolic resources. Trends Genet 18:291-294
    • (2002) Trends Genet , vol.18 , pp. 291-294
    • Rocha, E.P.C.1    Danchin, A.2
  • 53
    • 0035283304 scopus 로고    scopus 로고
    • Reducing the genome size of organelles favours gene transfer to the nucleus
    • Selosse MA, Albert B, Godelle B (2001) Reducing the genome size of organelles favours gene transfer to the nucleus. Trends Ecol Evol 16:135-141
    • (2001) Trends Ecol Evol , vol.16 , pp. 135-141
    • Selosse, M.A.1    Albert, B.2    Godelle, B.3
  • 57
    • 0041334089 scopus 로고    scopus 로고
    • Directional evolution for microsatellite size in maize
    • Vigouroux Y, Matsuoka Y, Doebley J (2003) Directional evolution for microsatellite size in maize. Mol Biol Evol 20:1480-1483
    • (2003) Mol Biol Evol , vol.20 , pp. 1480-1483
    • Vigouroux, Y.1    Matsuoka, Y.2    Doebley, J.3
  • 58
    • 0037388031 scopus 로고    scopus 로고
    • DNA helix: The importance of being GC-rich
    • Vinogradov AE (2003) DNA helix: the importance of being GC-rich. Nucleic Acids Res 31:1838-1844
    • (2003) Nucleic Acids Res , vol.31 , pp. 1838-1844
    • Vinogradov, A.E.1
  • 59
    • 0037308697 scopus 로고    scopus 로고
    • Broad-scale analysis contradicts the theory that generation time affects molecular evolutionary rates in plants
    • Whittle CA, Johnston MO (2003) Broad-scale analysis contradicts the theory that generation time affects molecular evolutionary rates in plants. J Mol Evol 56:223-233
    • (2003) J Mol Evol , vol.56 , pp. 223-233
    • Whittle, C.A.1    Johnston, M.O.2
  • 60
    • 0025344992 scopus 로고
    • Chloroplast DNA evolves slowly in the palm family (Arecaceae)
    • Wilson M, Gaut B, Clegg M (1990) Chloroplast DNA evolves slowly in the palm family (Arecaceae). Mol Biol Evol 7:303-314
    • (1990) Mol Biol Evol , vol.7 , pp. 303-314
    • Wilson, M.1    Gaut, B.2    Clegg, M.3
  • 62
    • 0023462635 scopus 로고
    • Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs
    • Wolfe KH, Li WH, Sharp PM (1987) Rates of nucleotide substitution vary greatly among plant mitochondrial, chloroplast, and nuclear DNAs. Proc Natl Acad Sci USA 84:9054-9058
    • (1987) Proc Natl Acad Sci USA , vol.84 , pp. 9054-9058
    • Wolfe, K.H.1    Li, W.H.2    Sharp, P.M.3
  • 63
    • 0041695491 scopus 로고    scopus 로고
    • Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes
    • Woolfit, Bromham L (2003) Increased rates of sequence evolution in endosymbiotic bacteria and fungi with small effective population sizes. Mol Biol Evol 20:1545-1555
    • (2003) Mol Biol Evol , vol.20 , pp. 1545-1555
    • Woolfit1    Bromham, L.2
  • 64
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • Xia X, Xie Z (2001) DAMBE: data analysis in molecular biology and evolution. J Hered 92:371-373
    • (2001) J Hered , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2


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