Genome walking with consensus primers: Application to the large single copy region of chloroplast DNA

Molecular Ecology Notes

Volumn 1, Issue 4, 2001, Pages 345-349

  Grivet, D ^a   Heinze, B ^b   Vendramin, G G ^c   Petit, R J ^a  

^a CEMAGREF   (France)

^b Inst F Forstgenetik F   (Austria)

^c CNR   (Italy)

Author keywords

Genome organization; Microsatellites; Multiple alignment; Primer design; Sequencing; Variation

Indexed keywords

EID: 0000789632     PISSN: 14718278     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (14)

1. Antoniw J (1995) A new method for designing PCR primers specific for groups of sequences and its application to plant viruses. Molecular Biotechnology, 4, 111-119.
2. Arnold ML, Buckner CM, Robinson JJ (1991) Pollen-mediated introgression and hybrid speciation in Louisiana irises. Proceedings of the National Academy of Sciences of the USA, 88, 1398-1402.
3. Belahbib N, Pemonge M-H, Ouassou A, Sbay H, Kremer A, Petit RJ (2001) Frequent cytoplasmic exchanges between oak species that are not closely related: Quercus suber and Q. ilex in Morocco. Molecular Ecology, 10, 2003-2012.
4. Clegg MT, Learn GH, Golenberg EM (1991) Molecular evolution of chloroplast DNA. In: Evolution at the Molecular Level (eds Selander RK, Clark AG, Whittam TS), pp. 135-149. Sinauer associates, Sunderland, MA.
5. Demesure B, Comps B, Petit RJ (1996) Chloroplast DNA phylogeography of the common beech (Fagus sylvatica L.) in Europe. Evolution, 50, 2515-2520.
6. Demesure B, Sodzi N, Petit RJ (1995) A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants. Molecular Ecology, 4, 129-131.
7. Devos KM, Moore G, Gale MD (1995) Conservation of marker synteny during evolution. Euphytica, 85, 367-372.
8. Dumolin-Lapègue S, Pemonge M-H, Petit RJ (1997) An enlarged set of consensus primers for the study of organelle DNA in plants. Molecular Ecology, 6, 393-397.
9. Fofona B, Harvengt L, Baudoin JP, Du Jardin P (1997) New primers for the polymerase chain reaction of cpDNA intergenic spacers in Phaseolus phylogeny. Belgian Journal of Botany, 129, 118-122.
10. Heinze B (1998) PCR-based chloroplast DNA assays for the identification of native Populus nigra and introduced poplar hybrids in Europe. Forest Genetics, 5, 31-38.
11. Rychlik W, Spencer WJ, Rhoades RE (1990) Optimization of the annealing temperature for DNA amplification in vitro. Nucleic Acids Research, 18, 6409-6412.
12. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology, 17, 1105-1109.
13. Wakasugi T, Tsudzuki J, Ito S, Nakashima K, Tsudzuki T, Sugiura M (1994) Loss of all ndh genes as determined by sequencing the entire chloroplast genome of the black pine Pinus thunbergii. Proceedings of the National Academy of Sciences of the USA, 91, 9794-9798.
14. Weising K & Gardner RC (1999) A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. Genome, 42, 9-19.