Directional evolution for microsatellite size in maize

Molecular Biology and Evolution

Volumn 20, Issue 9, 2003, Pages 1480-1483

  Vigouroux, Yves ^a   Matsuoka, Yoshihiro ^b   Doebley, John ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

^b FUKUI PREFECTURAL UNIVERSITY   (Japan)

Author keywords

Genome size; Mutation rate; Simple sequence repeat; SSR; Zea

Indexed keywords

MICROSATELLITE DNA;

ALLELE; ARTICLE; DIRECTED MOLECULAR EVOLUTION; DNA SEQUENCE; GENE LOCUS; GENETIC ANALYSIS; GEOGRAPHY; MAIZE; NONHUMAN; PHYLOGEOGRAPHY; POPULATION GENETICS; SEQUENCE ANALYSIS;

ALLELES; DEMOGRAPHY; EVOLUTION, MOLECULAR; GENES, PLANT; GENOTYPE; MICROSATELLITE REPEATS; MUTATION; VARIATION (GENETICS); ZEA MAYS;

EMBRYOPHYTA; ZEA; ZEA MAYS;

EID: 0041334089     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/molbev/msg156     Document Type: Article

References (21)

1. Amos, W., C. M. Hutter, M. D. Schug, and C. F. Aquadro. 2003. Directional evolution of size coupled with ascertainment bias for variation in Drosophila microsatellites. Mol. Biol. Evol. 20:660-662.
2. Amos, W., S. J. Sawcer, R. W. Feakes, and D. C. Rubinsztein. 1996. Microsatellites show mutational bias and heterozygote instability. Nat. Genet. 13:390-391.
3. Colson, I., and D. B. Goldstein. 1999. Evidence of complex mutations at microsatellite loci in Drosophila. Genetics 152:617-627.
4. Cooper, G., N. J. Burroughs, D. A. Rand, D. C. Rubinsztein, and W. Amos. 1999. Markov chain Monte Carlo analysis of human Y-chromosome microsatellites provides evidence of biased mutation. Proc. Natl. Acad. Sci. USA 96:11916-11921.
5. Di Rienzo, A., P. Donnelly, C. Toomajian, B. Sisk, A. Hill, M. L. Petzl-Erler, G. K. Haines, and D. H. Barch. 1998. Heterogeneity of microsatellite mutations within and between loci, and implications for human demographic histories. Genetics 148:1269-1284.
6. Ellegren, H., C. R. Primmer, and B. C. Sheldon. 1995. Microsatellite "evolution": directionality or bias? Nat. Genet. 11:360-362.
7. Goldstein, D. B., A. R. Linares, L. L. Cavalli-Sforza, and M. W. Feldman. 1995. Genetic absolute dating based on microsatellites and the origin of modern humans. Proc. Natl. Acad. Sci. USA 92:6723-6727.
8. Hughes, A. L., and M. K. Hughes. 1995. Small genomes for better flyers. Nature 377:391.
9. Hutter, C. M., M. D. Schug, and C. F. Aquadro. 1998. Microsatellite variation in Drosophila melanogaster and Drosophila simulans: a reciprocal test of the ascertainment bias hypothesis. Mol. Biol. Evol. 15:1620-1636.
10. Jarne, P., and P. J. L. Lagoda. 1996. Microsatellites, from molecules to populations and back. Trends Ecol. Evol. 11:424-429.
11. Matsuoka, Y., S. E. Mitchell, S. Kresovich, M. M. Goodman, and J. Doebley. 2002a. Microsatellites in Zea-variability, patterns of mutations, and use for evolutionary studies. Theor. Appl. Genet. 104:436-450.
12. Matsuoka, Y., Y. Vigouroux, M. M. Goodman, J. G. Sanchez, E. Buckler, and J. Doebley. 2002b. A single domestication for maize shown by multilocus microsatellite genotyping. Proc. Natl. Acad. Sci. USA 99:6080-6084.
13. Morgante, M., M. Hanafey, and W. Powell. 2002. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes. Nat. Genet. 30:194-200.
14. Poggio, L., M. Rosato, A. M. Chiavarino, and C.A. Naranjo. 1998. Genome size and environmental correlations in maize (Zea mays ssp. mays, Poaceae). Ann. Bot. 82(Suppl. A):107-115.
15. Primmer, C. R., H. Ellegren, N. Saino, and A. P. Moller. 1996. Directional evolution in germline microsatellite mutations. Nat. Genet. 13:391-393.
16. Rayburn, A. L., H. J. Price, J. D. Smith, and J. R. Gold. 1985. C-band heterochromatin and DNA content in Zea mays. Am. J. Bot. 72:1610-1617.
17. Rubinsztein, D. C., W. Amos, J. Leggo, S. Goodburn, S. Jain, S.-H. Li, R. L. Margolis, C. A. Ross, and M. A. Fergusson-Smith. 1995. Microsatellite evolution-evidence for directionality and variation in rate between species. Nat. Genet. 10:337-343.
18. Schlötterer, C., R. Ritter, B. Harr, and G. Brem. 1998. High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates. Mol. Biol. Evol. 15:1269-1274.
19. Udupa, S. M., and M. Baum. 2001. High mutation rate and mutational bias at (TAA)n microsatellite loci in chickpea (Cicer arietinum L.). Mol. Genet. Genomics 265:1097-1103.
20. Vigouroux, Y., J. S. Jaqueth, Y. Matsuoka, O. S. Smith, W. D. Beavis, J. S. C. Smith, and J. Doebley. 2002. Rate and pattern of mutation at microsatellite loci in maize. Mol. Biol. Evol. 19:1251-1260.
21. Wehrhahn, C. F. 1975. The evolution of selectively similar electrophoretically detectable alleles in finite natural populations. Genetics 80:375-394.