Coalescent analyses of multiple loci support a new route to speciation in birds

Evolution

Volumn 62, Issue 5, 2008, Pages 1182-1191

  Kondo, Beatrice ^a,b   Peters, Jeffrey L ^c   Rosensteel, Bryan B ^a   Omland, Kevin E ^a  

^a UNIVERSITY OF MARYLAND BALTIMORE COUNTY   (United States)

^b JOHNS HOPKINS UNIVERSITY   (United States)

^c UNIVERSITY OF ALASKA FAIRBANKS   (United States)

Author keywords

Coalescent methods; Evolution of migration; Founder event speciation; Icterus abeillei; Icterus galbula; Isolation with migration; Recent speciation

Indexed keywords

MITOCHONDRIAL DNA;

EVOLUTION; MIGRATION; MIGRATORY SPECIES; MITOCHONDRIAL DNA; PASSERINE; PHENOTYPIC PLASTICITY; RESERVOIR; SPECIATION (BIOLOGY);

ALLELE; ANIMAL; ARTICLE; CLASSIFICATION; FOUNDER EFFECT; GENE FLOW; GENETICS; MOLECULAR GENETICS; PHYSIOLOGY; POPULATION MIGRATION; SONGBIRD; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION;

ALLELES; ANIMAL MIGRATION; ANIMALS; DNA, MITOCHONDRIAL; FOUNDER EFFECT; GENE FLOW; GENETIC SPECIATION; MOLECULAR SEQUENCE DATA; SONGBIRDS; SPECIES SPECIFICITY;

AVES; ICTERUS ABEILLEI; ICTERUS GALBULA;

EID: 43049151450     PISSN: 00143820     EISSN: 15585646     Source Type: Journal    
DOI: 10.1111/j.1558-5646.2008.00345.x     Document Type: Article

References (60)

1. Able, K. P., and J. R. Belthoff. 1998. Rapid 'evolution' of migratory behavior in the introduced house finch of eastern North America. Proc. R. Soc. Lond. B. 265 : 2063 2071.
2. Allen, E. S. 2002. Long-term hybridization and the maintenance of species identity in orioles (Icterus). Indiana Univ., Bloomington.
3. Baker, J. M., E. López-Medrano, A. G. Navarro-Sigüenza, O. R. Rojas-Soto, and K. E. Omland. 2003. Recent speciation in the Orchard Oriole group: divergence of Icterus spurius spurius and Icterus spurius fuertesi. Auk. 120 : 848 859.
4. Barraclough, T. G., and A. P. Vogler. 2000. Detecting the geographical pattern of speciation from species-level phylogenies. Am. Nat. 155 : 419 434.
5. Bandelt, H. J., P. Forster, and A. Rohl. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 16 : 37 48.
6. Berthold, P. 1999. A comprehensive theory for the evolution, control and adaptability of avian migration. Ostrich. 70 : 1 11.
7. Bottema, C. D., G. Sarkar, J. D. Cassady, S. Ii, C. M. Dutton, and S. S. Sommer. 1993. Polymerase chain reaction amplification of specific alleles: a general method of detection of mutations, polymorphisms, and haplotypes. Methods Enzymol. 218 : 388 402.
8. Chesser, R. T., and R. M. Zink. 1994. Modes of speciation in birds: a test of Lynch's method. Evolution 48 : 490 497.
9. Clark, A. G. 1990. Inference of haplotypes from PCR-amplified samples of diploid populations. Mol. Biol. Evol. 7 : 111 122.
10. Crowley, T. J. 1995. Ice age terrestrial carbon changes revisited. Global Biogeochem. Cycles 9 : 377 389.
11. Dynesius, M., and R. Jansson. 2000. Evolutionary consequences of changes in species' geographical distributions driven by Milankovitch climate oscillations. Proc. Natl. Acad. Sci. USA 97 : 9115 9120.
12. Fitzpatrick, B. N., and M. Turelli. 2006. The geography of mammalian speciation: mixed signals from phylogenies and range maps. Evolution 60 : 601 615.
13. Fleischer, R. C., C. E. McIntosh, and C. L. Tarr. 1998. Evolution on a volcanic conveyor belt: using phylogeographic reconstructions and K-Ar-based ages of the Hawaiian Islands to estimate molecular evolutionary rates. Mol. Ecol. 7 : 533 545.
14. Friesen, V. L., B. C. Congdon, H. E. Walsh, and T. P. Birt. 1997. Intron variation in Marbled Murrelets detected using analyses of single-stranded conformation polymorphisms. Mol. Ecol. 6 : 1047 1058.
15. Gates, D. M. 1993. Climate change and its biological consequences. Sinauer Associates, Inc., Sunderland, MA.
16. Gill, F. B. 1990. Ornithology. W. H. Freeman and Company, New York.
17. Greenberg, R. 1992. Responses to a simple habitat cue in naive Swamp and Song Sparrows. Oecologia 92 : 299 300.
18. Hare, M. P., F. Cipriano, and S. R. Palumbi. 2002. Genetic evidence on the demography of speciation in allopatric dolphin species. Evolution 56 : 804 816.
19. Hey, J. 2005. On the number of New World founders: a population genetic portrait of the peopling of the Americas. PLoS Biol. 3 : e193.
20. Hey, J., and R. Nielsen. 2004. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 167 : 747 760.
21. Howell, S. N. G., and S. Webb. 1995. The birds of Mexico and Northern Central America. Oxford Univ. Press, Oxford.
22. Jaramillo, A., and P. Burke. 1999. New World Blackbirds: the Icterids. Princeton Univ. Press, Princeton, NJ.
23. Johnson, N. K., and C. Cicero. 2004. New mitochondrial DNA data affirm the importance of Pleistocene speciation in North American birds. Evolution 58 : 1122 1130.
24. Klein, N. K., and W. M. Brown. 1994. Intraspecific molecular phylogeny in the yellow warbler (Dendroica petechia), and implications for avian biogeography in the West Indies. Evolution 48 : 1914 1932.
25. Klicka, J., and R. M. Zink. 1997. The importance of recent ice ages in speciation: a failed paradigm. Science 227 : 1666 1669.
26. Kondo, B., and K. E. Omland. 2007. Ancestral state reconstruction of migration: multistate analysis reveals rapid changes in New World orioles. Auk 124 : 410 419.
27. Kondo, B., J. M. Baker, and K. E. Omland. 2004. Recent speciation between the Baltimore Oriole and the Black-backed Oriole. Condor 106 : 674 679.
28. Lanyon, S. M., and K. E. Omland. 1999. A molecular phylogeny of the blackbirds (Icteridae): five lineages revealed by cytochrome-b sequence data. Auk 116 : 629 639.
29. Lynch, J. D. 1989. The gauge of speciation: on the frequencies of modes of speciation. Pp. 527 553 in D. Otte and J. A. Endler, eds. Speciation and its consequences. Sinauer, Sunderland, MA.
30. Marshall H. D., and A. J. Baker. 1999. Colonization history of Atlantic island common chaffinches (Fringilla coelebs) revealed by mitochondrial DNA. Mol. Phylogenet. Evol. 11 : 201 212.
31. Mayr, E. 1942. Systematics and the origin of species from the viewpoint of a zoologist. Columbia Univ. Press, New York.
32. Mayr, E. 1963. Animal species and evolution. Belknap Press of Harvard Univ., Cambridge, MA.
33. Mettke-Hoffman, C., and R. Greenberg. 2005. Behavioral and cognitive adaptations to long-distance migration. Pp. 114 126 in R. Greenberg and P. P. Marra, eds. Birds of two worlds: the ecology and evolution of migration. The Johns Hopkins Univ. Press, Baltimore and London.
34. Milá, B., T. B. Smith, and R. K. Wayne. 2006. Postglacial population expansion drives the evolution of long-distance migration in a songbird. Evolution 60 : 2403 2409.
35. Moreau, R. E. 1966. The bird faunas of Africa and its islands. Academic Press, London.
36. Nielsen, R., and J. Wakeley. 2001. Distinguishing migration from isolation: a Markov chain Monte Carlo approach. Genetics 158 : 885 896.
37. Omland, K. E. 1997. Examining two standard assumptions of ancestral reconstructions: repeated loss of dichromatism in dabbling ducks. Evolution 51 : 1636 1646.
38. Omland, K. E. 1999. The assumptions and challenges of ancestral state reconstructions. Syst. Biol. 48 : 604 611.
39. Omland, K. E., and B. Kondo. 2006. Phylogenetic studies of plumage evolution and speciation in New World orioles (Icterus). Acta Zool. Sin. : Proceedings of the 23 International Ornithological Congress 52 (Suppl. 320 326.
40. Omland, K. E., and S. M. Lanyon. 2000. Reconstructing plumage evolution in orioles (Icterus): repeated convergence and reversal in patterns. Evolution 54 : 2119 2133.
41. Omland, K. E., S. M. Lanyon, and S. J. Fritz. 1999. A molecular phylogeny of the New World Orioles (Icterus): the importance of dense taxon sampling. Mol. Phylogenet. Evol. 12 : 224 239.
42. Omland, K. E., J. M. Baker, and J. L. Peters. 2006. Genetic signature of intermediate divergence: population history of Old and New World Holarctic ravens (Corvus corax). Mol. Ecol. 15 : 795 808.
43. Parrish, J. D. 2000. Behavioral, energetic, and conservation implications of foraging plasticity during migration. Stud. Avian Biol. 20 : 53 70.
44. Peters, J. L., W. Gretes, and K. E. Omland. 2005a. Late Pleistocene divergence between eastern and western populations of wood ducks (Aix sponsa) inferred by the 'isolation with migration' coalescent method. Mol. Ecol. 14 : 3407 3418.
45. Peters, J. L., K. G. McCracken, Y. N. Zhuravlev, Y. Lu, R. E. Wilson, K. P. Johnson, and K. E. Omland. 2005b. Phylogenetics of wigeons and allies (Anatidae: Anas): the importance of sampling multiple loci and multiple individuals. Mol. Phylogenet. Evol. 35 : 209 224.
46. Petit, R. J., A. El Mousadik, and O. Pons. 1998. Identifying populations for conservation on the basis of genetic markers. Conserv. Biol. 12 : 844 855.
47. Price, J. J., N. R. Friedman, and K. E. Omland. 2007. Song and plumage evolution in the New World orioles (Icterus) show similar lability and convergence in patterns. Evolution 61 : 850 863
48. Rappole, J. H. 1995. The ecology of migrant birds: a neotropical perspective. Smithsonian Institution Press, Washington, DC.
49. Rappole, J. H., and D. W. Warner. 1980. Ecological aspects of migrant bird behavior in Veracruz, Mexico. Pp. 353 389 in A. Keast and E. S. Morton, eds. Migrant birds in the neotropics: ecology, behavior, distribution, and conservation. Smithsonian Institution Press, Washington DC.
50. Rising, J. D., and N. J. Flood. 1998. Baltimore Oriole (Icterus galbula) in A. Poole and F. Gill, ed. Birds of North America. The Birds of North America, Inc., Philadelphia, PA.
51. Rosenberg, N. A., and M. Nordborg. 2002. Genealogical trees, coalescent theory and the analysis of genetic polymorphisms. Nat. Rev. Genet. 3 : 380 390.
52. Rozas, J. and R. Rozas. 1999. DnaSP version 3: an integrated program for molecular population genetics and molecular evolution analysis. Bioinformatics 15 : 174 175.
53. Rozen, S., and H. J. Skaletsky. 2000. Primer on the WWW for general users and for biologist programmers. Pp. 365 386 in S. Krawetz and S. Misener, eds. Bioinformatics methods and protocols: methods in molecular biology. Humana Press, Totowa, NJ.
54. Saether, B. E., R. Lande, S. Engen, H. Weimerskirch, M. Lillegard, R. Altwegg, P. H. Becker, T. Bregnballe, J. E. Brommer, R. H. McCleery, et al. 2005. Generation time and temporal scaling of bird population dynamics. Nature 436 : 99 102.
55. Voelker, G. 1999. Dispersal, vicariance, and clocks: historical biogeography and speciation in a cosmopolitan passerine genus (Anthus: Motacillidae). Evolution 53 : 1536 1552.
56. West-Eberhard, M. J. 2003. Developmental plasticity and evolution. Oxford Univ. Press, Oxford.
57. West-Eberhard, M. J. 2005. Developmental plasticity and the origin of species differences. Proc. Natl. Acad. Sci. USA 102 : 6543 6549.
58. Won, Y. J., and J. Hey. 2005. Divergence population genetics of chimpanzees. Mol. Biol. Evol. 22 : 297 307.
59. Winker, K. 2000. Migration and speciation. Nature 404 : 36.
60. Zink, R. M. 2002. Towards a framework for understanding the evolution of avian migration. J. Avian Biol. 33 : 433 436.