Genetic structure of the common sole (Solea solea) in the Bay of Biscay: Nurseries as units of selection?

Estuarine, Coastal and Shelf Science

Volumn 78, Issue 2, 2008, Pages 316-326

  Guinand, B ^a,b   Rolland, J L ^a   Bonhomme, F ^a,b  

^a UNIV MONTPELLIER   (France)

^b Station Mediterraneenne de l'Environnement Littoral   (France)

Author keywords

coastal nurseries; EPIC PCR; flatfish; genetic drift; juveniles; population genetics; selection

Indexed keywords

ESTUARINE ENVIRONMENT; FLATFISH; GENE FLOW; GENETIC DIFFERENTIATION; GENETIC DRIFT; GENETIC STRUCTURE; JUVENILE; NURSERY GROUND; POPULATION GENETICS; SELECTION; SPATIAL DISTRIBUTION;

BRETAGNE; CHARENTE MARITIME; EURASIA; EUROPE; FRANCE; GIRONDE ESTUARY; ILLE ET VILAINE; LOIRE ATLANTIQUE; LOIRE ESTUARY; PAYS DE LA LOIRE; PERTUIS D'ANTIOCHE; POITOU-CHARENTES; VILAINE ESTUARY; WESTERN EUROPE;

PLEURONECTIFORMES; SOLEA SOLEA;

EID: 43049116173     PISSN: 02727714     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ecss.2007.12.005     Document Type: Article

References (75)

1. K.W. Able A re-examination of fish estuarine dependence: evidence for connectivity between estuarine and ocean habitats Estuarine, Coastal and Shelf Science 64 2005 5 17
2. R. Amara R. Galois Nutritional condition of metamorphosing sole: spatial and temporal analyses Journal of Fish Biology 61 2004 72 88
3. R. Amara Y. Désaunay F. Lagardère Seasonal variation in growth of larval sole, Solea solea (L.) and consequences on the success of larval immigration Netherlands Journal of Sea Research 32 1994 287 298
4. R. Amara F. Lagardère Y. Désaunay J. Marchand Metamorphosis and estuarine colonisation in the common sole, Solea solea (L.): implications for recruitment regulation Oceanologica Acta 23 2000 469 483
5. H. Araki S. Yoshizumi N. Inomata T. Yamazaki Genetic coadaptation of the amylase gene system in Drosophila melanogaster : evidence for the selective advantage of the lowest AMY activity and of its epistatic genetic background Journal of Heredity 96 2005 388 395
6. S. Arbault P. Camus C. Le Bec Estimation du stock de sole ( Solea vulgaris , Quensel) dans le golfe de Gascogne à partir de la production d'œufs Journal of Applied Ichthyology 4 1986 145 156
7. S. Arnaud-Haond F. Bonhomme F. Blanc Large discrepancies in differentiation of allozymes, nuclear and mitochondrial DNA loci in recently founded Pacific populations of the pearl oyster Pinctada margaritifera Journal of Evolutionary Biology 16 2003 388 396
8. M.W. Beck K.L. Heck K.W. Able D.L. Childers D.B. Eggleston B.M. Gillanders B. Halpern C.G. Hays K. Hoshino T.J. Minello R.J. Orth P.F. Sheridan M.P. Weinstein The identification, conservation, and management of estuarine and marine nurseries for fish and invertebrates BioScience 51 2001 633 641
9. D. Bekkevold C. André T.G. Dahlgren L.A.W. Clausen E. Torstensen H. Mosegaard G.R. Carvalho T.B. Christensen E. Norlinder D.E. Ruzzante Environmental correlates of population differentiation in Atlantic herring Evolution 59 2005 2656 2668
10. K. Belkhir P. Borsa J. Goudet L. Chikhi F. Bonhomme Genetix v.4.03, Logiciel sous Windows™ pour la Génétique des Populations Laboratoire Génome et Population 2000 Université Montpellier 2 Montpellier
11. M.S. Blouin M. Parsons V. Lacaille S. Lotz Use of microsatellite loci to classify individuals by relatedness Molecular Ecology 5 1996 393 401
12. L. Bouneau G. Lardier C. Fischer M. Ronsin J. Weissenbach A. Bernot Analysis of 148 kb of genomic DNA of Tetraodon nigroviridis covering an amylase gene family DNA Sequences 14 2003 1 13
13. B. Boutier J.-F. Chiffoleau J.L. Gonzalez P. Lazure D. Auger I. Truquet Influence of the Gironde estuary outputs on cadmium concentrations in the coastal waters: consequences on the Marennes-Oléron bay (France) Oceanologica Acta 23 Suppl. 2000 745 757
14. C.S. Couturier A. Rouault D. McKenzie R. Galois S. Robert L. Joassard G. Claireaux Effects of water viscosity upon ventilation and metabolism of a flatfish, the common sole Solea solea (L.) Marine Biology 152 2007 803 814
15. A.R. Cossins D.L. Crawford Fish as models for environmental genomics Nature Reviews Genetics 6 2005 324 333
16. D.H. Cushing Plankton production and year class and year class strength in fish populations: an update of the match/mismatch hypothesis Advances in Marine Biology 26 1990 249 293
17. P. David P. Jarne Context-dependent survival differences among electrophoretic genotypes in natural populations of the marine bivalve Spisula ovalis Genetics 146 1997 335 344
18. K.J. Dawson K. Belkhir A Bayesian approach to the identification of panmictic populations and the assignment of individuals Genetical Research 78 2001 59 77
19. H. De Pontual F. Lagardère H. Troadec A. Batel Y. Désaunay C. Koutiskopoulos Otoliths imprinting of sole ( Solea solea ) from the Bay of Biscay: a tool to discriminate individuals from nursery origins? Oceanologica Acta 23 2000 497 513
20. Y. Désaunay D. Guérault O. Le Pape J.-C. Poulard Change in occurrence and abundance of northern/southern flatfishes over a 20-year period in a coastal nursery area (Bay of Vilaine) and on the eastern continental shelf of the Bay of Biscay Scientia Marina 70 Suppl. 1 2006 193 200
21. D. Dorel C. Koutsikopoulos Y. Désaunay J. Marchand Seasonal distribution of young sole ( Solea solea (L.)) in the nursery ground of the Bay of Vilaine (Northern Bay of Biscay) Netherlands Journal of Sea Research 27 1991 297 306
22. S.E. Douglas S. Mandla J.W. Gallant Molecular analysis of the amylase gene and its expression during development in the winter flounder Pleuronectes americanus . Aquaculture 190 2000 247 260
23. A. Exadactylos A.J. Geffen P. Panagiotaki J.P. Thorpe Population structure of Dover sole Solea solea : RAPD and allozyme data indicate divergence in European stocks Marine Ecology Progress Series 246 2003 253 264
24. J.M. Flowers S.C. Schroeter R.S. Burton The recruitment sweepstakes has many winners: genetic evidence from the sea urchin Strongylocentrotus purpuratus Evolution 56 2002 1445 1453
25. J. Forget B. Beliaeff G. Bocquené Acetylcholinesterase activity in copepods ( Tigriopus brevicornis ) from the Vilaine River estuary, France, as a biomarker of neurotoxic contaminants Aquatic Toxicology 62 2003 195 204
26. C. Gilliers O. Le Pape Y. Désaunay J. Morin D. Guérault R. Amara Are growth and density quantitative indicators of essential fish habitat quality? An application to the common sole Solea solea nursery grounds Estuarine, Coastal and Shelf Science 69 2006 96 106
27. F.E. Grousset J.M. Jouanneau P. Castaing G. Lavaux C. Latouche A 70 year record of contamination from industrial activity along the Garonne River and its tributaries (SW France) Estuarine, Coastal and Shelf Science 48 1999 401 414
28. D. Hedgecock Does variance in reproductive success limit effective population size of marine organisms? A.R. Beaumont Genetics and Evolution of Aquatic Organisms 1994 Chapman & Hall London 122 134
29. M.E. Hellberg R.S. Burton J.E. Neigel S.R. Palumbi Genetic assessment of connectivity in marine populations Bulletin of Marine Science 70 Suppl. 2002 273 290
30. J. Hemmer-Hansen E.E. Nielsen J. Frydenberg V. Loeschke Adaptive divergence in a high gene flow environment: Hsc70 variation in the European flounder ( Platichthys flesus L.) Heredity 2007 10.1038/sj.hdy.6801055
31. G. Hoarau E. Boon D.N. Jongma S. Ferber J. Palsson H.W. van der Veer A.D. Rijnsdorp W.T. Stam J.L. Olsen Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice ( Pleuronectes platessa L.) Proceedings of the Royal Society of London: Biological Sciences 272 2005 497 504
32. M.S. Johnson R. Black Chaotic genetic patchiness in an inter-tidal limpet, Siphonaria sp Marine Biology 70 1982 157 164
33. M.S. Johnson R. Black Patterns beneath the chaos: the effect of recruitment on genetic patchiness in an intertidal limpet Evolution 38 1984 1371 1383
34. R.K. Koehn R.I.E. Newell F. Immermann Maintenance of an aminopeptidase allele frequency cline by natural selection Proceedings of the National Academy of Sciences of the United States of America 77 1980 5385 5389
35. G. Kotoulas F. Bonhomme P. Borsa Genetic structure of the common sole Solea vulgaris at different geographic scales Marine Biology 122 1995 361 375
36. C. Koutsikopoulos N. Lacroix Distribution and abundance of sole ( Solea solea (L.)) eggs and larvae in the Bay of Biscay between 1986 and 1989 Netherlands Journal of Sea Research 29 1992 81 91
37. C. Koutsikopoulos Y. Désaunay D. Dorel J. Marchand The role of coastal areas in the life history of sole ( Solea solea (L.)) in the bay of Biscay Scientia Marina 53 1989 567 575
38. C. Koutsikopoulos L. Fortier J. Gagné Cross-shelf dispersion of Dover sole eggs and larvae ( Solea solea ) in Biscay Bay and recruitment to inshore nurseries Journal of Plankton Research 13 1991 923 945
39. C. Koutsikopoulos D. Dorel Y. Désaunay Movement of sole Solea solea (L.) in the Bay of Biscay: coastal environment and spawning migration Journal of the Marine Biological Association of the United Kingdom 75 1995 109 126
40. Å. Krogdahl G.I. Hemre T.P. Mommsen Carbohydrates in fish nutrition: digestion and absorption in postlarval stages Aquaculture Nutrition 11 2005 103 122
41. P. Laffargue F. Lagardère A.D. Rijnsdorp A. Fillon R. Amara Growth performances of juvenile soles Solea solea under environmental constraints of embayed nursery areas Aquatic Living Resources 20 2007 213 221
42. P.F. Larsen E.E. Nielsen T.D. Williams J. Hemmer-Hansen J.K. Chipman M. Kruhøffer P. Grønkjaer S.G. George L. Dirskjøt V. Loeschke Adaptive differences in gene expression in European flounder ( Platichthys flesus ) Molecular Ecology 16 2007 4674 4683
43. V. Laurent P. Voisin S. Planes Genetic clines in the Bay of Biscay provide estimates of migration for Sardina pilchardus Journal of Heredity 97 2006 81 88
44. P. Lazure A.M. Jegou 3D modelling of seasonal evolution of Loire and Gironde plumes on Biscay Bay continental shelf Oceanologica Acta 21 1998 165 177
45. P. Legendre Nested anova user's guide 2002 Département de sciences biologiques, Université de Montréal 26 pp.
46. P. Legendre M.J. Anderson Distance-based redundancy analysis: testing multispecies responses in multifactorial ecological experiments Ecological Monographs 69 1999 1 24
47. O. Le Pape F. Chauvet S. Mahévas P. Lazure D. Guérault Y. Désaunay Quantitative description of habitat suitability for the juvenile common sole ( Solea solea , L.) in the Bay of Biscay (France) and the contribution of different habitats to the adult population Journal of Sea Research 50 2003 139 149
48. O. Le Pape J. Holley D. Guérault Y. Désaunay Quality of coastal and estuarine essential fish habitats: estimations based on the size of juvenile common sole ( Solea solea L.) Estuarine, Coastal and Shelf Science 58 2003 793 803
49. O. Le Pape F.J. Chauvet Y. Désaunay D. Guérault Relationship between interannual variations of the river plume and the extent of nursery grounds for the common sole ( Solea solea , L.) in Vilaine Bay. Effects on recruitment variability Journal of Sea Research 50 2003 177 185
50. P. Ma Y. Liu K.P. Reddy W.K. Chan T.J. Lam Characterization of the seabass pancreatic α-amylase gene and promoter General and Comparative Endocrinology 137 2004 78 88
51. J. Marchand A. Tanguy J. Laroche L. Quiniou D. Moraga Responses of European flounder Platichthys flesus populations to contamination in different estuaries along the Atlantic coast of France Marine Ecology Progress Series 260 2003 273 284
52. J. Marchand A. Tanguy G. Charrier L. Quiniou E. Plee-Gauthier J. Laroche Molecular identification and expression of differentially regulated genes of the European flounder, Platichthys flesus , submitted to pesticide exposure Marine Biotechnology 8 2006 275 294
53. M. Niksic M. Romano E. Buratti F. Pagani F.E. Baralle Functional analysis of cis -acting elements regulating the alternative splicing of human CFTR exon 9 Human Molecular Genetics 8 1999 2339 2349
54. S. Planes P. Lenfant Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus , induced by a large variance in individual reproductive success Molecular Ecology 11 2002 1515 1524
55. M. Prudence J. Moal P. Boudry J.-Y. Daniel C. Quéré F. Jeffroy C. Mingant M. Ropert E. Bédier A. Van Wormhoudt J.-F. Samain A. Huvet An amylase gene polymorphism is associated with growth differences in the Pacific cupped oyster Crassostrea gigas Animal Genetics 37 2006 348 351
56. J.M. Pujolar G.E. Maes F.A.M. Volckaert Genetic patchiness among recruits in the European eel, Anguilla anguilla Marine Ecology Progress Series 307 2006 209 217
57. ST Theoretical Population Biology 57 2000 285 296
58. RNO (Réseau National d'Observation) Résultats de la surveillance de la qualité du milieu marin littoral, Départements: Morbihan, Loire-Atlantique, Vendée Ifremer – Laboratoire Côtier d'Arcachon 77 2004 Available from: http://www.ifremer.fr/envlit/pdf/surveillancepdf/bull2004/bul_mpl_2004.pdf
59. RNO (Réseau National d'Observation) Résultats de la surveillance de la qualité du milieu marin littoral, Départements: Gironde, Landes, Pyrénées Atlantiques Ifremer – Station de Nantes 115 2004 Available from: http://www.ifremer.fr/envlit/pdf/surveillancepdf/bull2004/bul_ar_2004.pdf
60. G. Roesijadi Metallothionein and its role in toxic metal regulation Comparative Biochemistry and Physiology 113C 1996 117 123
61. J.M. Roessig C.M. Woodley J.J. Cech Jr. L.J. Hansen Effects of global climate change on marine and estuarine fishes and fisheries Reviews in Fish Biology and Fisheries 14 2004 251 275
62. J.-L. Rolland F. Bonhomme F. Lagardère M. Hassan B. Guinand Population structure of the common sole ( Solea solea ) in the Northeastern Atlantic and the Mediterranean Sea: revisiting the divide with EPIC markers Marine Biology 151 2007 327 341
63. D.E. Ruzzante C.T. Taggart D. Cook Spatial and temporal variation in the genetic composition of a larval cod ( Gadus morhua ) aggregation: cohort contribution and genetic stability Canadian Journal of Fisheries and Aquatic Sciences 53 1996 2695 2705
64. K.A. Selkoe S.D. Gaines J.E. Caselle R.R. Warner Current shifts and kin aggregation explain genetic patchiness in fish recruit Ecology 87 2006 3082 3094
65. N. So G. Maes F.A.M. Volckaert Intra-annual genetic variation in the downstream larval drift of sutchi catfish ( Pangasianodon hypophthalmus ) in the Mekong river Biological Journal of the Linnean Society 89 2006 719 728
66. M. Solé J. Potrykus C. Fernández-Díaz J. Blasco Variations on stress defences and metallothionein levels in the Senegal sole, Solea senegalensis , during early larval stages Fish Physiology and Biochemistry 30 2004 57 66
67. P.F. Straub M.L. Higham A. Tanguy B.J. Landau W.C. Phoel L.S. Hales Jr. T.K.M. Thwing Suppression subtractive hybridization cDNA libraries to identify differentially expressed genes from contrasting fish habitats Marine Biotechnology 6 2004 386 399
68. D. Véliz E. Bourget L. Bernatchez Regional variation in the spatial scale of selection at MPI* and GPI* in the acorn barnacle Semibalanus balanoides (Crustacea) Journal of Evolutionary Biology 17 2004 953 966
69. C. Vinagre J. Salgado M.J. Costa H.N. Cabral Nursery fidelity, food web interactions and primary sources of nutrition of the juveniles of Solea solea and S. senegalensis in the Tagus estuary (Portugal): a stable isotope approach Estuarine, Coastal and Shelf Science 76 2008 255 268
70. M. Virgilio T. Backeljau M. Abbati Mitochondrial DNA and allozyme patterns of Hediste diversicolor (Polychaeta: Nereididae): the importance of small scale genetic structuring Marine Ecology Progress Series 326 2006 157 165
71. B.S. Weir Inference about linkage disequilibrium Biometrics 31 1979 235 254
72. B.S. Weir C.C. Cockerham Estimating F -statistics for the analysis of population structure Evolution 38 1984 1358 1370
73. T.D. Williams K. Gensberg S.D. Minchin J.K. Chipman A DNA expression array to detect toxic stress response in European flounder ( Platichthys flesus ) Aquatic Toxicology 65 2003 141 157
74. T.D. Williams A.M. Diab S.G. George R.E. Godfrey V. Sabine A. Conesa S.D. Minchin P.C. Watts J.K. Chipman Development of the GENIPOL European flounder ( Platichthys flesus ) microarray and determination of temporal transcriptional response to cadmium at low dose Environmental Science and Technology 40 2006 6479 6488
75. S. Wright The genetical structure of populations Annals of Eugenics 15 1951 323 354