Population structure of the common sole (Solea solea) in the Northeastern Atlantic and the Mediterranean Sea: Revisiting the divide with EPIC markers

Marine Biology

Volumn 151, Issue 1, 2007, Pages 327-341

  Rolland, J L ^a   Bonhomme, F ^a   Lagardere F ^b   Hassan, M ^a   Guinand, B ^a  

^a UNIV MONTPELLIER   (France)

^b IFREMER   (France)

Author keywords

[No Author keywords available]

Indexed keywords

FLATFISH; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; GEOGRAPHICAL VARIATION; POPULATION GENETICS; POPULATION STRUCTURE; TEMPORAL VARIATION;

ADRIATIC SEA; AEGEAN SEA; ATLANTIC OCEAN; ATLANTIC OCEAN (NORTHEAST); BAY OF BISCAY; DENMARK; EURASIA; EUROPE; KATTEGAT; MEDITERRANEAN SEA; NORTHERN EUROPE; SCANDINAVIA;

PISCES; SOLEA SOLEA;

EID: 33847341763     PISSN: 00253162     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00227-006-0484-0     Document Type: Article

References (85)

1. Anonymous (2003) Report of the working group on the assessment of southern shelf demersal stocks. ICES CM 2003/ACFM 03
2. Avise JC (1998) The history and purview of phylogeography: a personal reflection. Mol Ecol 7:371-379
3. Bahri-Sfar L, Lemaire C, Ben Hassine OK, Bonhomme F (2000) Fragmentation of sea bass populations in the western and eastern Mediterranean as revealed by microsatellite polymorphism. Proc R Soc Lond B267:929-935
4. Bargelloni L, Alarcon JA, Alvarez MC, Penzo E, Magoulas A, Reis C, Patarnello T (2003) Discord in the family Sparidae (Teleostei): divergent phylogeographical patterns across the Atlantic-Mediterranean divide. J Evol Biol 16:1149-1158
5. Bargelloni L, Alarcon JA, Alvarez MC, Penzo E, Magoulas A, Palma J, Patarnello T (2005) The Atlantic-Mediterranean transition: discordant genetic patterns in two seabream species, Diplodus puntazzo (Cetti) and Diplodus sargus (L.). Mol Phylogenet Evol 36:523-535
6. Barton NH (2000) Genetic hitchhiking. Phil Trans R Soc Lond B Biol Sci 355:1553-1562
7. Beardmore JA, Ward RD (1977) Polymorphism, selection, and multilocus heterozygosity in the plaice, Pleuronectes platessa L. Lect Notes Biomath 19:207-221
8. st tell us? Trends Ecol Evol 20:435-440
9. TM pour la Génétique des Populations. Laboratoire Génome et Population, Université Montpellier 2, Montpellier
10. Blanquer A, Alayse JP, Berrada-Rkhami O, Berrebi P (1992) Allozyme variation in turbot (Psetta maxima) and brill (Scophthalmus rhombus) (Osteichthyes, Pleuronectiformes, Scophthalmidae) throughout their range in Europe. J Fish Biol 41:725-736
11. Borsa P, Naciri M, Bahri L, Chikhi L, Garcia de Leon FJ, Kotoulas G, Bonhomme F (1997a) Zoogéographie infraspécifique de la mer Méditerranée: analyse des données génétiques populationnelles sur seize espèces atlanto-méditerranéennes (Poissons et Invertébrés). Vie Milieu 47:295-305
12. Borsa P, Blanquer A, Berrebi P (1997b) Genetic structure of the flounders Platichthys flesus and P. stellatus at different geographic scales. Mar Biol 129:233-246
13. Bouneau L, Lardier G, Fischer C, Ronsin M, Weissenbach J, Bernot A (2003) Analysis of 148kb of genomic DNA of Tetraodon nigroviridis covering an amylase gene family. DNA Seq 14:1-13
14. Buonaccorsi VP, McDowell JR, Graves JE (2001) Reconciling patterns of inter-ocean molecular variance from four classes of molecular markers in blue marlin (Makaira nigricans). Mol Ecol 10:1179-1196
15. Cabral HN, Castro F, Linhares D, Alexandrino P (2003) Genetic differentiation of Solea solea (Linnaeus, 1758) and S. senegalensis Kaup, 1858, (Pisces: Pleuronectiformes) from several estuarine systems of the Portuguese coast. Sci Mar 67:43-52
16. Carlsson J, McDowell JR, Díaz-Jaimes P, Carlsson JEL, Boles SV, Gold JR, Graves JE (2004) Microsatellite and mitochondrial DNA analyses of Atlantic bluefin tuna (Thunnus thynnus thynnus) population structure in the Mediterranean Sea. Mol Ecol 13:3345-3356
17. Castillo AGF, Alvarez P, Garcia-Vazquez E (2005) Population structure of Merluccius merluccius along the Iberian Peninsula coast. ICES J Mar Sci 62:1699-1704
18. Chapman RW, Ball AO, Mash LR (2002) Spatial homogeneity and temporal heterogeneity of red drum (Sciaenops ocellatus) microsatellites: effective population sizes and management implications. Mar Biotechnol 4:589-603
19. Charrier G, Chenel T, Durand JD, Girard M, Quiniou L, Laroche J (2006) Discrepancies in phylogeographical patterns of two European anglerfishes (Lophius budegassa and Lophius piscatorius). Mol Phylogenet Evol 38:742-754
20. Cimmaruta R, Bondanelli P, Nascetti G (2005) Genetic structure and environmental heterogeneity in the European hake (Merluccius merluccius). Mol Ecol 14:2577-2591
21. Dannewitz J, Maes GE, Johansson L, Wickstrom H, Volckaert FAM, Jarvï T (2005) Panmixia in the European eel: a matter of time... Proc R Soc Lond B272:1129-1137
22. De Innocentiis S, Sola L, Cataudella S, Bentzen P (2001) Allozyme and microsatellite provide discordant estimates of population differentiation in the endangered dusky grouper (Epinephelus marginatus) within the Mediterranean Sea. Mol Ecol 10:2163-2175
23. Dorel D, Koutsikopoulos C, Désaunay Y, Marchand J (1991) Seasonal distribution of young sole (Solea solea (L.) in the nursery ground of the Bay of Vilaine (Northern Bay of Biscay). Neth J Sea Res 27:297-306
24. Durand JD, Collet A, Chow S, Guinand B, Borsa P (2005) Nuclear and mitochondrial DNA markers indicate unidirectional gene flow of Indo-Pacific to Atlantic bigeye tuna (Thunnus obesus) populations, and their admixture off southern Africa. Mar Biol 147:313-322
25. Ely B, Stoner DS, Alavarado-Bremer JR, Dean JM, Addis P, Cau A, Thelen EJ, Jones WJ, Black DE, Smith L, Scott K, Naseri I, Quattro JM (2002) Analyses of IdhA gene and mitochondrial control region of Atlantic northern bluefin tuna populations. Mar Biotechnol 4:583-588
26. Exadactylos A, Geffen AJ, Thorpe JP (1998) Population structure of the Dover sole, Solea solea L., in a background of high gene flow. Neth J Sea Res 40:117-129
27. Exadactylos A, Geffen AJ, Panagiotaki P, Thorpe JP (2003) Population structure of Dover sole Solea solea: RAPD and allozyme data indicate divergence in European stocks. Mar Ecol Prog Ser 246:253-264
28. Felsenstein J (1993) Phylip: phylogeny inference package, v. 3.5c. Department of Genetics, University of Washington, Seattle
29. Garoia F, Guarniero I, Piccinetti C, Tinti F (2004) First microsatellite loci of red mullet (Mullus barbatus) and their applications to genetic structure analysis of Adriatic shared stock. Mar Biotechnol 6:446-452
30. Garoia F, Marzola S, Guarniero I, Trentini M, Tinti F (2006) Isolation of polymorphic DNA microsatellites in the common sole, Solea vulgaris. Mol Ecol Notes 6:144-146
31. Guarniero I, Franzellitti S, Ungaro N, Tommasini S, Piccinetti C, Tinti F (2002) Control region haplotype variation in the central Mediterranean common sole indicates geographical isolation and population structuring in Italian stocks. J Fish Biol 60:1459-1474
32. Gysels ES, Hellemans B, Patarnello T, Volckaert FAM (2004) Current and historic gene flow of the sand goby Pomatoschistus minutes on the European Continental Shelf and in the Mediterranean Sea. Biol J Linn Soc 83:561-576
33. Hare MP (2001) Nuclear genes phylogeography. Trends Ecol Evol 16:700-706
34. Hassan M, Lemaire C, Fauvelot C, Bonhomme F (2002) Seventeen new exon-primed intron-crossing polymerase chain reaction amplifiable introns in fish. Mol Ecol Notes 2:334-340
35. Hedgecock D (1994) Temporal and spatial genetic-structure of marine animal populations in the California current. Calif Coop Ocean Fish Investig Rep 35:73-81
36. Hickerson MJ, Cunningham CW (2005) Contrasting quaternary histories in an ecologically divergent sister pair of low-dispersing intertidal fish (Xiphister) revealed by multilocus DNA analysis. Evolution 59:344-360
37. Hoarau G, Rijnsdorp AD, van der Veer HW, Stam WT, Olsen JL (2002) Population structure of plaice (Pleuronectes platessa L.) in northern Europe: microsatellites revealed large scale spatial and temporal homogeneity. Mol Ecol 11:1165-1176
38. Hoarau G, Piquet AMT, van der Veer HW, Rijnsdorp AD, Stam WT, Olsen JL (2004) Population structure of plaice (Pleuronectes platessa L.) in northern Europe: a comparison of resolving power between microsatellites and mitochondrial DNA data. J Sea Res 51:183-190
39. Hoarau G, Boon E, Jongma DN, Ferber S, Palsson J, van der Veer IIW, Rijnsdorp AD, Stam WT, Olsen JL (2005) Low effective population size and evidence for inbreeding in an overexploited flatfish, plaice (Pleuronectes platessa L.). Proc R Soc Lond B272:497-504
40. Hutchinson WF, Carvalho GR, Rogers SI (2001) Marked genetic structuring in localised spawning populations of cod Gadus morhua in the North Sea and adjoining waters, as revealed by microsatellites. Mar Ecol Prog Ser 223:251-260
41. Johnson MS, Black R (1982) Chaotic patchiness in an intertidal limpet, Siphonaria sp. Mar Biol 70:157-164
42. Karaiskou N, Triantafyllidis A, Triantaphyllidis C (2004) Shallow genetic structure of three species of the genus Trachurus in European waters. Mar Ecol Prog Ser 281:193-205
43. Kenchington E, Heino M, Nielsen EE (2003) Managing marine genetic diversity: time for action? ICES J Mar Sci 60:1172-1176
44. Knutsen H, André C, Jorde PE, Skogen MD, Thuròczy E, Stenseth NC (2004) Transport of North Sea cod larvae into the Skagerrak coastal populations. Proc R Soc Lond B271:1337-1344
45. Kotoulas G, Bonhomme F, Borsa P (1995) Genetic structure of the common sole Solea vulgaris at different geographic scales. Mar Biol 122:361-375
46. Koutsikopoulos C, Fortier L, Gagné J (1991) Cross-shelf dispersion of Dover sole eggs and larvae (Solea solea) in Biscay Bay and recruitment to inshore nurseries. J Plankton Res 13:923-945
47. Koutsikopoulos C, Dorel D, Désaunay Y (1995) Movement of sole Solea solea (L.) in the Bay of Biscay: coastal environment and spawning migration. J Mar Biol Assoc UK 75:109-126
48. Launey S, Ledu C, Boudry P, Bonhomme F, Naciri-Graven H (2002) Geographic structure in the European flat oyster (Ostrea edulis L.) as revealed by microsatellite polymorphism. J Hered 93:331-338
49. Le Pape O, Chauvet F, Mahévas S, Lazure P, Guérault D, Désaunay Y (2003) Quantitative description of habitat suitability for the juvenile common sole (Solea solea, L.) in the Bay of Biscay (France) and the contribution of different habitats to the adult population. J Sea Res 50:139-149
50. Léauté JP, Caill-Milly N (2003) Les petites pêches côtières et estuariennes françaises de sud du Golfe de Gascogne. Final Report PECOSUD EC/DG Fish (DG XIV) No. 99/024, IFREMER, DRV/RH/DT/03-01
51. Lemaire C, Versini JJ, Bonhomme F (2005) Maintenance of genetic differentiation across a transition zone in the sea: discordance between nuclear and cytoplasmic markers. J Evol Biol 18:70-80
52. Maes GE, Pujolar JM, Hellemans B, Volckaert FAM (2006) Evidence for isolation by time in the European eel (Anguilla anguilla L.). Mol Ecol 15:2095-2107
53. Magoulas A, Castilho R, Caetano S, Marcato S, Patarnello T (2006) Mitochondrial DNA reveals a mosaic pattern of phylogeographical structure in Atlantic and Mediterranean populations of anchovy (Engraulis encrasicolus). Mol Phylogenet Evol. DOI 10.1016/j.ympev.2006.01.016
54. Marchand J, Tanguy A, Laroche J, Quiniou L, Moraga D (2003) Responses of European flounder Platichthys flesus populations to contamination in different estuaries along the Atlantic coast of France. Mar Ecol Prog Ser 260:273-284
55. Mariani S, Hutchinson WF, Hatfield EMC, Ruzzante DE, Simmonds EJ, Dahlgren TG, André C, Brigham J, Torstensen E, Carvalho GR (2005) North Sea herring population structure as revealed by microsatellite analysis. Mar Ecol Prog Ser 303:245-257
56. Naciri M, Lemaire C, Borsa P, Bonhomme F (1999) Genetic study of the Atlantic/Mediterranean transition in sea bass (Dicentrarchus labrax). J Hered 90:591-596
57. Nakadate M, Viñas J, Corriero A, Clarke S, Suzuki M, Chow S (2005) Genetic isolation between Atlantic and Mediterranean albacore populations inferred from mitochondrial and nuclear DNA markers. J Fish Biol 66:1545-1557
58. Nesbø CL, Rueness EK, Iversen SA, Skagen DW, Jakobsen KS (2000) Phylogeography and population history of Atlantic mackerel (Scomber scombrus L.): a genealogical approach reveals genetic structuring among the eastern Atlantic stocks. Proc R Soc Lond B267:281-292
59. Nielsen EE, Hansen MM, Ruzzante DE, Meldrup D, Grønkjaer P (2003) Evidence of a hybrid-zone in Atlantic cod (Gadus morhua) in the Baltic and the Danish Belt Sea, revealed by individual admixture analysis. Mol Ecol 12:1497-1508
60. Nielsen EE, Nielsen PH, Meldrup D, Hansen MM (2004) Genetic population structure of turbot (Scophthalmus maximus L.) supports the presence of multiple hybrid zones for marine fishes in the transition zone between the Baltic Sea and the North Sea. Mol Ecol 13:585-595
61. Olsen JB, Habicht C, Reynolds J, Seeb JE (2004) Moderate and highly polymorphic microsatellites provide discordant estimates of population divergence in sockeye salmon (Oncorhynchus nerka). Environ Biol Fish 69:261-273
62. ST and microsatellite polymorphism in the marine fish, walleye pollock (Theragra chalcogramma): implications for resolving weak population structure. Mol Ecol 13:1799-1814
63. Palumbi SR, Baker CS (1994) Contrasting population structure from nuclear intron sequences and mtDNA in humpback whales. Mol Biol Evol 11:426-435
64. Page RDM (1996) TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12:357-358
65. Pinheiro A, Teixeira CM, Rego AM, Marques JF, Cabral HM (2005) Genetic and morphological variation of Solea lascaris (Risso, 1810) along the Portuguese coast. Fish Res 73:67-78
66. Planes S, Lenfant P (2002) Temporal change in the genetic structure between and within cohorts of a marine fish, Diplodus sargus, induced by a large variance in individual reproductive success. Mol Ecol 11:1515-1524
67. Planes S, Romans P (2004) Evidence of genetic selection for growth in new recruits of a marine fish. Mol Ecol 13:2049-2060
68. Pujolar JM, Roldán MI, Pla C (2001) Allozyme differentiation of bonito in the Mediterranean sea. J Fish Biol 59:169-174
69. Pujolar JM, Maes GE, Volckaert FAM (2006) Genetic patchiness among recruits in the European eel, Anguilla anguilla. Mar Ecol Progr Ser 307:209-217
70. Quéro JC, Desoutter M, Lagardère F (1986) Soleidae. In: Whitehead PJP, Bauchot ML, Hureau JC, Tortonese E (eds) Fishes of the north-eastern Atlantic and Mediterranean, vol. 3. Unesco, Paris, pp 1308-1324
71. Reynolds J, Weir BS, Cockerham CC (1983) Estimation of the co-ancestry coefficient-basis for a short term genetic distance. Genetics 105:767-779
72. Rousset F (1997) Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145:1219-1228
73. Ruzzante DE, Taggart CT, Cook D (1996) Spatial and temporal variation in the genetic composition of a larval cod (Gadus morhua) aggregation; cohort contribution and genetic stability. Can J Fish Aquat Sci 53:2695-2705
74. Ruzzante DE, Mariani S, Bekkevold D et al (2006) Biocomplexity in a highly migratory pelagic fish, Atlantic herring. Proc R Soc Lond B273:1459-1464
75. Saitou N, Nei M (1987) The neighbour-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
76. Sartor P, Sbrana M, Ungaro N, Marano CA, Piccinetti C, Manfrin GP (2002) Distribution and abundance of Citharus linguatula, Lepidorhombus boscii, and Solea vulgaris (Osteichthyes: Pleuronectiformes) in the Mediterranean sea. Sci Mar 66(Suppl. 2):83-102
77. Schlötterer C (2002) A microsatellite-based multilocus screen for the identification of local selective sweeps. Genetics 160:753-763
78. Steffanni S, Thorley JH (2003) Mitochondrial DNA phylogeography reveals the existence of an Evolutionarily Significant Unit of the sand goby Pomatoschistus minutus in the Adriatic (Eastern Mediterranean). Mol Phylogenet Evol 28:601-609
79. Suzuki N, Nishida M, Yoseda K, ÜstÜndaǧ C, Şahin T, Amaoka K (2004) Phylogeographic relationships within the Mediterranean turbot inferred by mitochondrial DNA haplotype variation. J Fish Biol 65:580-585
80. Tinti F, Di Nunno C, Guarniero I, Talenti M, Tommasini S, Fabbri E, Piccinetti C (2002) Mitochondrial DNA sequence variation suggests the lack of genetic heterogeneity in the Adriatic and Ionian stocks of Sardina pilchardus. Mar Biotech 4:163-172
81. Viñas J, Alvarado Bremer J, Pla C (2004) Phylogeography of the Atlantic bonito (Sarda sarda) in the northern Mediterranean: the combined effects of historical vicariance, population expansion, secondary invasion, and isolation by distance. Mol Phylogenet Evol 33:32-42
82. Weir BS (1979) Inference about linkage disequilibrium. Biometrics 31:235-254
83. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38:1358-1370
84. Wright S (1951) The genetical structure of populations. Ann Eugen 15:323-354
85. Zardoya R, Castilho R, Grande C, Favre-Krey L, Caetano S, Marcato S, Krey G, Patarnello T (2004) Differential population structuring of two closely related fish species, the mackerel (Scomber scombrus) and the chubmackerel (Scomber japonicus), in theMediterranean Sa. Mol Ecol 13:1785-1798