Characterization of the seabass pancreatic α-amylase gene and promoter

General and Comparative Endocrinology

Volumn 137, Issue 1, 2004, Pages 78-88

  Ma, Peisong ^a   Liu, Yansong ^b   Reddy, Konda P ^a   Chan, Woon Khiong ^a   Lam, T J ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b SHANDONG CANCER HOSPITAL AND INSTITUTE   (China)

Author keywords

AR42 J cell; Glucocorticoid response element; Promoter; Seabass; Amylase

Indexed keywords

AMYLASE; COMPLEMENTARY DNA; DEXAMETHASONE; GLUCOCORTICOID; HEPATOCYTE NUCLEAR FACTOR 3; LUCIFERASE; NUCLEOTIDE; PANCREAS ENZYME; PANCREAS TRANSCRIPTION FACTOR 1; POLYPEPTIDE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

AMINO ACID COMPOSITION; ANIMAL CELL; ARTICLE; BINDING SITE; CELL LINE; CONTROLLED STUDY; DELETION MUTANT; DNA RESPONSIVE ELEMENT; ENZYME ACTIVITY; EUROPEAN SEA BASS; EXON; FISH GENETICS; GEL MOBILITY SHIFT ASSAY; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUSION; GENE IDENTIFICATION; GENE LOCATION; GENE SEQUENCE; GENETIC TRANSCRIPTION; INTRON; MAMMAL; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PANCREAS; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN FUNCTION; RAT; REPORTER GENE; SEQUENCE HOMOLOGY; SITE DIRECTED MUTAGENESIS; SOUTHERN BLOTTING; SPECIES COMPARISON; TRANSCRIPTION INITIATION SITE;

LATES CALCARIFER;

EID: 1942439746     PISSN: 00166480     EISSN: 10956840     Source Type: Journal    
DOI: 10.1016/j.ygcen.2004.02.018     Document Type: Article

References (34)

1. Benkel F.B., Nguyen T., Ahluwalia N., Benkel I.K., Hichey A.D. Cloning and expression of a chicken α-amylase gene. Gene. 192:1997;261-270.
2. Bern H.A., Madsen S.S. A selective survey of the endocrine system of rainbow trout (Oncorhynchus mykiss) with emphasis on the hormonal regulation of ion balance. Aquaculture. 100:1992;237-262.
3. Bouneau L., Lardier G., Fischer C., Ronsin M., Weissenbach J., Bernot A. Analysis of 148. kb of genomic DNA of Tetraodon nigroviridis covering an amylase gene family DNA Sequence. 14:2003;1-13.
4. Brayer D.G., Luo Y., Withers G.S. The structure of human pancreatic α-amylase at 1.8. Å resolution and comparisons with related enzymes Protein Sci. 4:1995;1730-1742.
5. Cockell M., Stolarczyk D., Frutiger S., Hagenbuc̈hle O., Wellauer P.K. Binding sites for hepatocyte nuclear factor 3β or 3γ and pancreas transcription factor 1 are required for efficient expression of the Gene Encoding Pancreatic a-Amylase. Mol. Cell. Biol. 15:1995;1933-1941.
6. Dignam J.D., Lebovitz R.M., Roeder R.G. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. Nucleic Acids Res. 11:1983;1475-1489.
7. Douglas S.E., Mandla S., Gallant J.W. Molecular analysis of the amylase gene and its expression during development in the winter founder, Pleuronectes americanus. Aquaculture. 190:2000;247-260.
8. Ducouret B., Tujague M., Ashraf J., Mouchel N., Servel N., Valotaire Y., Thompson E.B. Cloning of a theleost fish glucocorticoid receptor shows that it contains a deoxyribonucleic acid-binding domain different from that of mammals. Endocrinology. 136:1995;3774-3783.
9. Gumucio D.L., Wiebauer K., Caldwell R.M., Samuelson C.L., Meisler M.H. Concerted evolution of human amylase genes. Mol. Cell. Biol. 8:1988;1197-1205.
10. Horri A., Emi M., Tomita N., Nishide T., Ogawa M., Mori T., Matsubara K. Primary structure of human pancreatic α-amylase gene: its comparison with human salivary α-amylase gene. Gene. 60:1987;57-64.
11. Janacek S. Sequence similarities and evolutionary relationships of microbial, plant and animal α-amylase. Eur. J. Biochem. 224:1994;519-524.
12. Johnson M.T., Rosenberg P.M., Meisler H.M. An insulin-response element in the pancreatic enhancer of the amylase gene. J. Biol. Chem. 268:1993;464-468.
13. Kaiser A., Stier U., Riecken E.O., Rosewicz S. Glucocorticoid receptor concentration modulates glucocorticoid-regulated gene expression in rat pancreatic AR42J cells. Digestion. 57:1996;149-160.
14. Kannius-Janson M., Lidberg U., Bjursell G., Nilsson J. The tissue-specific regulation of the carboxyl ester lipase gene in exocrine pancreas differs significantly between mouse and human. Biochem. J. 351:2000;367-376.
15. Karin M. New twists in gene regulation by glucocorticoid receptor: is DNA binding dispensable. Cell. 93:1998;487-490.
16. Knoebl I., Fitzpatrick M.S., Schreck C.B. Characterization of a glucocorticoid receptor in the brains of Chinook salmon, Oncorhynchus tshawytscha. Gen. Comp. Endocrinol. 101:1996;195-204.
17. Logsdon D.S., Perot K.J., Mcdonald R.A. Mechanism of glucocorticoid- induced increase in pancreatic amylase gene transcription. J. Biol. Chem. 262:1987;15765-15769.
18. Ma P., Sivaloganathan B., Reddy P.K., Chan W.K., Lam T.J. Ontogeny of α-amylase gene expression in seabass larvae (Lates calcarifer). Mar. Biotech. 3:2001;463-469.
19. Majumdar A.P., Nielsen H. Influence of glucocorticoids on prenatal development of the gut and pancreas in rats. J. Gastroenterol. 20:1985;65-71.
20. Morin B., Zhu C., Woodcock R.G., Li M., Woodward N.R., Nichols A.L., Holland J.L. The binding site for Xenopus glucocorticoid receptor accessory factor and a single adjacent half-GRE form an independent gulcocorticoid response unit. Biochemistry. 39:2000;12234-12242.
21. Nishide T., Nakamura Y., Emi M., Yamamoto T., Ogawa M., Mori T., Matsubara K. Primary structure of human salivary-amylase gene. Gene. 41:1986;299-304.
22. Rausa F., Samadani U., Ye H., Lim L., Fletcher C.F., Jenkins N.A., Cope G.N., Costa H.R. The cut-homeodomain transcriptional Activator HNF-6 is coexpressed with its target gene HNF-3β in the developing murine liver and pancreas. Dev. Biol. 192:1997;228-246.
23. Roy W.S., Fedorov A., Gilbert W. Large scale comparison of intron positions in mammalian genes shows intron loss but no gain. Proc. Natl. Acad. Sci. USA. 100:2003;7158-7162.
24. Rydberg E.H., Sidhu G., Vo H.C., Hewitt J., Cote H.C., Wang Y., Numao S., MacGillivray R.T., Overall C.M., Brayer G.D., Withers S.G. Cloning, mutagenesis, and structural analysis of human pancreatic alpha- amylase expressed in Pichia pastoris. Protein Sci. 8:1999;635-643.
25. Slater E.P., Hesse H., Muller J.M., Beato M. Glucocorticoid receptor binding site in the mouse alpha-amylase 2 gene mediates response to the hormone. Mol. Endocrinol. 7:1993;907-914.
26. Stenson C., Mcnair A., Byrnes L., Murphy M., Smith T., Gannon F. Atlantic salmon HNF-3/forkhead cDNA sequence, evolution, expression, and functional analysis. DNA Cell. Biol. 19:2000;59-68.
27. Tseng Y.T., Stabila P.J., Nguyen T.T., Mcgonnigal G.B., Waschek A.J., Padbury F.J. A novel glucocorticoid regulatory unit mediates the hormone responsiveness of the β1-adrenergic receptor gene. Mol. Cell. Endocrinol. 181:2001;165-178.
28. Wallace K.N., Pack M. Unique and conserved aspects of gut development in zebrafish. Dev. Biol. 255:2003;12-29.
29. Wendelaar Bonga S.E. The stress response in fish. Physiol. Rev. 77:1997;591-625.
30. Yardley D.G. The amylase gene-enzyme system of fishes. Development expression of amylase in the mosquito fish. J. Exp. Zool. 245:1988;24-32.
31. Yasuda T., Yasuda T., Katsuki M., Yokoyama M., Murata A., Monden M., Matsubara K. Identification of novel pancreas-specific regulatory sequences in the promoter region of human pancreatic secretory trypsin inhibitor gene. J. Biol. Chem. 273:1998;34413-34421.
32. Yokouchi H., Horii A., Emi M., Tomita N., Doi S., Ogawa M., Mori T., Matsubara K. Cloning and characterization of a third type of human-amylase gene, AMY2B. Gene. 90:1990;281-286.
33. Youson H.J., Al-Mahrouki A.A. Ontogenetic and phylogenetic development of the endocrine pancreas (islet organ) in fishes. Gen. Comp. Endocrinol. 116:1999;303-335.
34. Zambonino Infante J.L., Cahu C.L. Ontogeny of the gastrointestinal tract of marine fish larvae. Comp. Biochem. Physiol. C130:2001;477-487.