Evolution of the clock from yeast to man by period-doubling folds in the cellular oscillator

Cold Spring Harbor Symposia on Quantitative Biology

Volumn 72, Issue , 2007, Pages 421-429

  Klevecz, R R ^a   Li, C M ^a  

^a CITY OF HOPE NATIONAL MEDICAL CENTER   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PHENELZINE; LITHIUM; PROTEIN; TRANSCRIPTION FACTOR CLOCK;

ANIMAL; BIOLOGICAL MODEL; BIOLOGICAL RHYTHM; CELL CYCLE; CIRCADIAN RHYTHM; CYTOLOGY; DRUG EFFECT; EVOLUTION; GENETIC TRANSCRIPTION; GENETICS; HUMAN; MUTATION; OXIDATION REDUCTION REACTION; PERIODICITY; PHYSIOLOGY; REVIEW; SACCHAROMYCES CEREVISIAE; STATISTICS; CELL CYCLE G1 PHASE; CELL CYCLE S PHASE; CELL SURFACE; CONSERVATION BIOLOGY; DAY LENGTH; DELETION MUTANT; FUNGAL GENE; GENE CLUSTER; GENE EXPRESSION; HIGH FREQUENCY OSCILLATION; MALE; MOLECULAR DYNAMICS; MOLECULAR EVOLUTION; MUTANT; NONHUMAN; OSCILLATOR; PHOTOAUTOTROPH; PRECAMBRIAN; PROTEIN FOLDING; PROTEIN UNFOLDING; STOCHASTIC MODEL; YEAST;

ACTIVITY CYCLES; ANIMALS; BIOLOGICAL CLOCKS; CELL CYCLE; CIRCADIAN RHYTHM; EVOLUTION; HUMANS; MODELS, BIOLOGICAL; MUTATION; OXIDATION-REDUCTION; PHENELZINE; SACCHAROMYCES CEREVISIAE; STOCHASTIC PROCESSES; TRANSCRIPTION, GENETIC;

EID: 48249114344     PISSN: 00917451     EISSN: None     Source Type: Book Series    
DOI: 10.1101/sqb.2007.72.040     Document Type: Conference Paper

References (44)

1. Bipatnath M., Dennis P.P., and Bremer H. 1998. Initiation and velocity of chromosome replication in Escherichia coli B/r and K-12. J. Bacteriol. 180: 265.
2. Bolen J.L., Duran O., and Klevecz R.R. 1993. Amplification and damping of deterministic noise in coupled cellular arrays. Physica D 67: 245.
3. Bruce V.G. 1972. Mutants of the biological clock in Chlamydomonas reinhardi. Genetics 70: 537.
4. Chisholm S.W. and Costello J.C. 1980. Influence of environmental factors and population composition on the timing of cell division in Thalassiosira fluviatilis (Bacillariophyceae) grown on light/dark cycles. J. Phycol. 16: 375.
5. Collins J.M. 1978. Rates of DNA synthesis during the S-phase of HeLa cells. J. Biol. Chem. 253: 8570.
6. Donachie W.D. 1968. Relationship between cell size and time of initiation of DNA replication. Nature 219: 1077.
7. Feldman J.F. and Dunlap J.C. 1982. Neurospora crassa: A unique system for studying circadian clocks. Photochem. Photobiol. Rev. 7: 319.
8. Feldman J.F. and Hoyle M.N. 1973. Isolation of circadian clock mutants of Neurospora crassa. Genetics 75: 605.
9. Feldman J.F., Gardner G., and Denison R. 1979. Genetic analysis of the circadian clock of Neurospora. In Biological rhythms and their central mechanism: Naito Foundation Symposium, Tokyo, Japan, 1978 (ed. M. Suda et al.), p. 58. Elsevier, North Holland, Amsterdam.
10. Hartwell L.H., Culotti J., Pringle J.R., and Reid B.J. 1974. Genetic control of the cell division cycle in yeast. Science 183: 46.
11. Hess B. and Boiteux A. 1971. Oscillatory phenomena in biochemistry. Annu. Rev. Biochem. 40: 237.
12. Holmquist G., Gray M., Porter T., and Jordan J. 1982. Characterization of Giemsa dark- and light-band DNA. Cell 31: 121.
13. Jauker F. and Cleffmann G. 1970. Oscillation of individual generation times in cells lines of Tetrahymena pyriformis. Exp. Cell Res. 62: 477.
14. Kapp L.N., Millis A.J., and Pious D.A. 1979. Variation in S phase in synchronous human cell lines. In Vitro 15: 669.
15. Kellis M., Birren B.W., and Lander E.S. 2004. Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae. Nature 428: 617.
16. Klevecz R.R. 1969. Temporal order in mammalian cells. I. The periodic synthesis of lactate dehydrogenase in the cell cycle. J. Cell Biol. 43: 207.
17. -. 1976. Quantized generation time in mammalian cells as an expression of the cellular clock. Proc. Natl. Acad. Sci. 73: 4012.
18. -. 1984. Cellular oscillators as vestiges of a primitive circadian clock. In Cell cycle clocks (ed. L. Edmunds), p. 47. Marcel Dekker, New York.
19. Klevecz R.R. and Kapp L.N. 1973. Intermittent DNA synthesis and periodic expression of enzyme activity in the cell cycle of WI-38. J. Cell Biol. 58: 564.
20. Klevecz R.R. and King G.A. 1982. Temperature compensation in the mammalian cell cycle. Exp. Cell Res. 140: 307.
21. Klevecz R.R. and Ruddle F.H. 1968. Cyclic changes in enzyme activity in synchronized mammalian cell cultures. Science 159: 634.
22. Klevecz R.R., Bolen J.L., Duran O. 1992. Self-organization in biological systems. Int. J. Bifurcation Chaos 2: 941.
23. Klevecz R.R., Kauffman S.A., and Shymko R.M. 1984. Cellular clocks and oscillators. Int. Rev. Cytol. 86: 97.
24. Klevecz R.R., Kros J., and Gross S.D. 1978. Phase response versus positive and negative division delay in animal cells. Exp. Cell Res. 116: 285.
25. Klevecz R.R., Bolen J., Forrest G., and Murray D.B. 2004. A genomewide oscillation in transcription gates DNA replication and cell cycle. Proc. Natl. Acad. Sci. 101: 1200.
26. Konopka R.J. and Benzer S. 1971. Clock mutants of Drosophila melanogaster. Proc. Natl. Acad. Sci. 68: 2112.
27. Li C.M. and Klevecz R.R. 2006. A rapid genome-scale response of the transcriptional oscillator to perturbation reveals a period-doubling path to phenotypic change. Proc. Natl. Acad. Sci. 103: 16254.
28. Margulis L. 1993. Origins of species: Acquired genomes and individuality. Biosystems 31: 121.
29. Murray D.B., Beckmann M., and Kitano H. 2007. Regulation of yeast oscillatory dynamics. Proc. Natl. Acad. Sci. 104: 2241.
30. Murray D.B., Klevecz R.R., and Lloyd D. 2003. Generation and maintenance of synchrony in Saccharomyces cerevisiae continuous culture. Exp. Cell Res. 287: 10.
31. Nordstrom K. and Dasgupta S. 2006. Copy-number control of the Escherichia coli chromosome: A plasmidologist's view. EMBO Rep. 7: 484.
32. Ohno S. 1970. Evolution by gene duplication. Springer, New York.
33. Panella G. 1972. Paleontological evidence on the earth's rotational history since early precambrian. Astrophys. Space Sci. 16: 212.
34. Pittendrigh C.S. 1967. Circadian systems. I. The driving oscillation and its assay in Drosophila pseudoobscura. Proc. Natl. Acad. Sci. 58: 1762.
35. Potten C.S. and Bullock J.C. 1983. Cell kinetic studies in the epidermis of the mouse. I. Changes in labeling index with time after tritiated thymidine administration. Experientia 39: 1125.
36. Potten C.S. and Loeffler M. 1990. Stem cells: Attributes, cycles, spirals, pitfalls and uncertainties. Lessons for and from the crypt. Development 110: 1001.
37. Rossler O.E. 1976. An equation for continuous chaos. Phys. Lett. 35A: 397.
38. Searcy D.G. 2003. Metabolic integration during the evolutionary origin of mitochondria. Cell Res. 13: 229.
39. Searcy D.G., Stein D.B., and Searcy K.B. 1981. A mycoplasmalike archaebacterium possibly related to the nucleus and cytoplasms of eukaryotic cells. Ann. N.Y. Acad. Sci. 361: 312.
40. Shymko R.M., Klevecz R.R., and Kauffman S.A. 1984. The cell cycle as an oscillatory system. In Cell cycle clocks (ed. L.N. Edmunds, Jr.), p. 273. Marcel Dekker, New York.
41. Tu B.P., Kudlicki A., Rowicka M., and McKnight S.L. 2005. Logic of the yeast metabolic cycle: Temporal compartmentalization of cellular processes. Science 310: 1152.
42. Turcotte D.L., Cisne J.L., and Nordmann J.C. 1977. On the evolution of the lunar orbit. Icarus 30: 254.
43. van der Veen D.R., Minh N.L., Gos P., Arneric M., Gerkema M.P., and Schibler U. 2006. Impact of behavior on central and peripheral circadian clocks in the common vole Microtus arvalis, a mammal with ultradian rhythms. Proc. Natl. Acad. Sci. 103: 3393.
44. Wells J.W. 1963. Coral growth and geochronometry. Nature 197: 948.